CmaCh12G003230 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G003230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA (Cytosine-5)-methyltransferase, putative
LocationCma_Chr12 : 1655898 .. 1658308 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCACCATCTACGGTAGCCCGAGCCTGACCATTTAGCGCAGGACGAGCAAAGTTACCAGACGTAAATGGAGAAGGCATTTCCAAAGCAGCAAGACGAACATTGGAGACTCATTGGATTCTTCAGCGGCATTGGTGGCATGGTACTCTTTTCGCCTATGCTTCTCTCTGTATCCTTCTCGATCTCAGGCGTATATCCTACAGAGGCTTTGTTGCGATTTCAATTATAACAGAGATACTCTCTACTGAGTGCTGGCGTCGATGCGAAAGTAGTACAAGCTTTTGATATCAAGGATAAATCAAACGAATTTACGAGCATAATTTCGGCGATCGTCCGCATCAGGTACGATAGAATCATCTTCTTCTTATATCGGTTTGAGAACGCCTTGCTTTCTACCGTATGAATAAGTATTCGGTGCTTCTCAATGAAAACATTGAAACTAGTTTTCCTTCAAAATCGAATGCATATTCTCTTCAGTTGTGGTTTAAGTAGATTGAATTTGAGGATGTTGAATGTTGTCGCCAAGCTTATTTAATTAGTGAGGAACTACCTCCTGGATACTGATGCACGTATGGTATGATAAGCTTTCAATTTACAGCTAGTATGAATTCACAATGTGAGCGGACAGTAGATAGGTACATGAAATGTTTTTGTTGGAGTATCTGATTCAAATGACTGGCGGTGTGGACTTTCTTTTGAACTGCCAAAGTAAAAGCGTTCTACAATCTTCTCAACATCGTCTTCTTCTTATTATTTCTTGTTTCGAGAACGATTATGTTGCTTGTCCATCGCAGGAGTAAAGTTTTGCTGCTTTTCAATACAGATAACGGAACTATTTTGTTCATTCAGAATTGAGATGCCAATTCTTTTCTATCGTGGATTTAGTAGATTGAATTTGAAGTTATCGAATGTTGAAACATAGCTTATCTATTTTACCTACCCCTGACTGATGGACGTATTTGTTAAGTGATTAGATTACAATTTGAAGCTCGTATGAACTCTCAACGTAGTGGAGAACAAGGCGTCATGCCATTTAGGAACATGTAACAGGTTATTCACAGCTTCCTTTGCATAGGAGTGTCGGTTTTTTCTTATGAGTTTAGTTATGGTTAAAGCACCCTACGTGCTTGGTCAAGCTACTGTAAAGACTCAGAAAGCAACAGAGAGCTACAAGAAAGAGGCAGAACTTGAGTCTAAAAAACGTATCATGGAGAGACCTTGAATTCTGCAGTGTTATTGGTGGTGTGATAGCTCTCATTTGAATGAGATTCTAGTTTCCTTAGTCCTTGGATCTGTCATCTAATTTGGAGTCTGGACGTTTAGGATACTAAAGTAATTCTTATATTTTGCATGCATAGCTTCCTATGGATAGGAGTGTCATCTTTTTCTTGTCGGTTAGTTATGGTCAAAAGTAACCCATATGCTTGGTTGAGCTACAGAAAGAAAAAGACCGCTACAGGAAAGACTCAAAACTAGAGCCTAAAAAATGTACCATGGAGAGTGTTTGAATTCTTCAGCAACATCGGTTGCATGGTCGGTCTCATTTGAATTCTCATTTTTCCCAACTATATAGGTTTGCCATACTTTGTCCTTGGATCTGTTATCTAATTTGGAGTTTAGTCGTCTAGGATGCTGAAGAAATTCTTATATTTCATGTCCATTTTGGTCCTCAGAGGTTAGACACCTCATTTTGTGTATCGTTTTTGTTAGGACTGCACAACACATTTTATGCTTGTACGTCATGCATGTTATAAATTGGAAGTAGATAATTGTGCACCATATAATTAGGTCTACAAAAGCATTCCAGCGAGGCTCGGGCATTTTCATTCCTCAAAATTCTTGAGTTGGTGCTACAAACATAAGGCCATCGGTAATGTTATTCATGGAAAATGTTGGATTTGAAGTATGTTTCTTGATCTTATCTGTGTGCTGGAACTTGTTTGACTGATTCATCATCATACTTTAGATGCTTTCCTTTTTGTTGTAGACATCTGACACACATACAAAAATGGCTGATAGATTGGAAAAAGTTGATTTTTCTAGGCAGGAGTTCATTTTAAGCCCAATGCATTGCCATGATTTTTCTACAAACATTGTCATGCAGCTGTACAACATTGAACATATAAAAATATAACCCCGATTTACGCTCAGTTTGTGAACTGAAGTTTCATGTCATAATATGGATCTACCTTATTATTTATCTGTGCATTGTGTGTTTCAAGGTAGATTTTATCGTTCGTTTCTAAATTGGCTACCACTAAAAAGAGGGCTTTCTTACTTACCTAAGCTGTAGGTTCTAAATTTATATGGCATCCTTCTACTTTTGCAGGCTAAAAGGAGGCTTTTATCCTTTCAAAGGCAATCATACAATAATCAACTTCTTTGGCGCCCAGTCCATTACTCGAGAATGA

mRNA sequence

GTCTCACCATCTACGGTAGCCCGAGCCTGACCATTTAGCGCAGGACGAGCAAAGTTACCAGACGTAAATGGAGAAGGCATTTCCAAAGCAGCAAGACGAACATTGGAGACTCATTGGATTCTTCAGCGGCATTGGTGGCATGAGATACTCTCTACTGAGTGCTGGCGTCGATGCGAAAGTAGTACAAGCTTTTGATATCAAGGATAAATCAAACGAATTTACGAGCATAATTTCGGCGATCGTCCGCATCAGGCTAAAAGGAGGCTTTTATCCTTTCAAAGGCAATCATACAATAATCAACTTCTTTGGCGCCCAGTCCATTACTCGAGAATGA

Coding sequence (CDS)

ATGGAGAAGGCATTTCCAAAGCAGCAAGACGAACATTGGAGACTCATTGGATTCTTCAGCGGCATTGGTGGCATGAGATACTCTCTACTGAGTGCTGGCGTCGATGCGAAAGTAGTACAAGCTTTTGATATCAAGGATAAATCAAACGAATTTACGAGCATAATTTCGGCGATCGTCCGCATCAGGCTAAAAGGAGGCTTTTATCCTTTCAAAGGCAATCATACAATAATCAACTTCTTTGGCGCCCAGTCCATTACTCGAGAATGA

Protein sequence

MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNEFTSIISAIVRIRLKGGFYPFKGNHTIINFFGAQSITRE
Homology
[Close]
BLAST of CmaCh12G003230 vs. TrEMBL
Match: A0A0A0LSE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380010 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-14
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          MEK FPK QDE WR++ F+SGIGGMRYSLLSAG+ AKVVQAFDI DK+N+
Sbjct: 1  MEKVFPKLQDEPWRVLEFYSGIGGMRYSLLSAGIHAKVVQAFDINDKAND 50

[Close]
BLAST of CmaCh12G003230 vs. TrEMBL
Match: M5XDQ6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006956mg PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          MEK   KQ DE WR++ F+SGIGGMRYSL+ AGV+AKVV+AFDI D +N+
Sbjct: 1  MEKGLGKQGDEPWRVLEFYSGIGGMRYSLMKAGVNAKVVEAFDINDTAND 50

[Close]
BLAST of CmaCh12G003230 vs. TrEMBL
Match: B9HA21_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26700g PE=4 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-10
Identity = 30/45 (66.67%), Postives = 41/45 (91.11%), Query Frame = 1 

Query: 6  PKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          PK+++E WR++ F+SGIGGMRYSL+ AGV+AKVV+AFDI DK+N+
Sbjct: 9  PKKEEEPWRVLEFYSGIGGMRYSLMKAGVNAKVVEAFDINDKAND 53

[Close]
BLAST of CmaCh12G003230 vs. TrEMBL
Match: A0A067F6F1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016377mg PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNEFTSIISAIVR 60
          MEK   K   E WR++ F+SGIGGMRYSL+ A V A+VV+AFDI DK+N+          
Sbjct: 1  MEKDMCKNDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDV--------- 60

Query: 61 IRLKGGFYPFKGN 74
            L  G  P++GN
Sbjct: 61 YELNFGHRPYQGN 64

[Close]
BLAST of CmaCh12G003230 vs. TrEMBL
Match: V4UMX9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008576mg PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNEFTSIISAIVR 60
          MEK   K   E WR++ F+SGIGGMRYSL+ A V A+VV+AFDI DK+N+          
Sbjct: 1  MEKDMCKNDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDV--------- 60

Query: 61 IRLKGGFYPFKGN 74
            L  G  P++GN
Sbjct: 61 YELNFGHRPYQGN 64

[Close]
BLAST of CmaCh12G003230 vs. TAIR10
Match: AT5G25480.1 (AT5G25480.1 DNA methyltransferase-2)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-08
Identity = 20/38 (52.63%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 13 WRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          W+++ F+SGIGGMRYSL+++G+ ++VV+AF+I D +N+
Sbjct: 15 WQVLEFYSGIGGMRYSLMASGIVSEVVEAFEINDSAND 52

[Close]
BLAST of CmaCh12G003230 vs. NCBI nr
Match: gi|449441930|ref|XP_004138735.1| (PREDICTED: DNA (cytosine-5)-methyltransferase isoform X2 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-14
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          MEK FPK QDE WR++ F+SGIGGMRYSLLSAG+ AKVVQAFDI DK+N+
Sbjct: 1  MEKVFPKLQDEPWRVLEFYSGIGGMRYSLLSAGIHAKVVQAFDINDKAND 50

[Close]
BLAST of CmaCh12G003230 vs. NCBI nr
Match: gi|778672419|ref|XP_011649803.1| (PREDICTED: DNA (cytosine-5)-methyltransferase isoform X1 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-14
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          MEK FPK QDE WR++ F+SGIGGMRYSLLSAG+ AKVVQAFDI DK+N+
Sbjct: 1  MEKVFPKLQDEPWRVLEFYSGIGGMRYSLLSAGIHAKVVQAFDINDKAND 50

[Close]
BLAST of CmaCh12G003230 vs. NCBI nr
Match: gi|659088790|ref|XP_008445162.1| (PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-14
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          MEK FPK QDE WR++ F+SGIGGMRYSLLSAG+ AKVVQAFDI DK+N+
Sbjct: 1  MEKVFPKLQDEPWRVLEFYSGIGGMRYSLLSAGIHAKVVQAFDINDKAND 50

[Close]
BLAST of CmaCh12G003230 vs. NCBI nr
Match: gi|645226172|ref|XP_008219917.1| (PREDICTED: LOW QUALITY PROTEIN: tRNA (cytosine(38)-C(5))-methyltransferase [Prunus mume])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          MEK   KQ DE WR++ F+SGIGGMRYSL+ AGV+AKVV+AFDI D +N+
Sbjct: 1  MEKGLGKQGDEPWRVLEFYSGIGGMRYSLMKAGVNAKVVEAFDINDTAND 50

[Close]
BLAST of CmaCh12G003230 vs. NCBI nr
Match: gi|596169303|ref|XP_007223053.1| (hypothetical protein PRUPE_ppa006956mg [Prunus persica])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 1  MEKAFPKQQDEHWRLIGFFSGIGGMRYSLLSAGVDAKVVQAFDIKDKSNE 51
          MEK   KQ DE WR++ F+SGIGGMRYSL+ AGV+AKVV+AFDI D +N+
Sbjct: 1  MEKGLGKQGDEPWRVLEFYSGIGGMRYSLMKAGVNAKVVEAFDINDTAND 50

The following BLAST results are available for this feature:
BLAST of CmaCh12G003230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G003230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSE8_CUCSA4.6e-1476.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380010 PE=3 SV=1[more]
M5XDQ6_PRUPE6.2e-1166.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006956mg PE=3 SV=1[more]
B9HA21_POPTR2.4e-1066.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26700g PE=4 SV=2[more]
A0A067F6F1_CITSI2.0e-0947.95Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016377mg PE=3 SV=1[more]
V4UMX9_9ROSI2.0e-0947.95Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008576mg PE=3 SV=1[more]
BLAST of CmaCh12G003230 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G25480.15.8e-0852.63 DNA methyltransferase-2[more]
BLAST of CmaCh12G003230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441930|ref|XP_004138735.1|6.6e-1476.00PREDICTED: DNA (cytosine-5)-methyltransferase isoform X2 [Cucumis sativus][more]
gi|778672419|ref|XP_011649803.1|6.6e-1476.00PREDICTED: DNA (cytosine-5)-methyltransferase isoform X1 [Cucumis sativus][more]
gi|659088790|ref|XP_008445162.1|6.6e-1476.00PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 [Cucumis melo][more]
gi|645226172|ref|XP_008219917.1|8.9e-1166.00PREDICTED: LOW QUALITY PROTEIN: tRNA (cytosine(38)-C(5))-methyltransferase [Prun... [more]
gi|596169303|ref|XP_007223053.1|8.9e-1166.00hypothetical protein PRUPE_ppa006956mg [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042967 acyl-carrier-protein biosynthetic process
biological_process GO:0032259 methylation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004379 glycylpeptide N-tetradecanoyltransferase activity
molecular_function GO:0008168 methyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G003230.1CmaCh12G003230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G003230CsaV3_2G031850Cucumber (Chinese Long) v3cmacucB0192
CmaCh12G003230CsGy2G023010Cucumber (Gy14) v2cgybcmaB168
CmaCh12G003230Carg03912Silver-seed gourdcarcmaB1349
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G003230Melon (DHL92) v3.5.1cmameB162
CmaCh12G003230Melon (DHL92) v3.5.1cmameB168
CmaCh12G003230Watermelon (Charleston Gray)cmawcgB163
CmaCh12G003230Watermelon (Charleston Gray)cmawcgB169
CmaCh12G003230Watermelon (97103) v1cmawmB148
CmaCh12G003230Watermelon (97103) v1cmawmB162
CmaCh12G003230Cucurbita pepo (Zucchini)cmacpeB191
CmaCh12G003230Cucurbita pepo (Zucchini)cmacpeB179
CmaCh12G003230Cucurbita pepo (Zucchini)cmacpeB201
CmaCh12G003230Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G003230Bottle gourd (USVL1VR-Ls)cmalsiB176
CmaCh12G003230Bottle gourd (USVL1VR-Ls)cmalsiB184
CmaCh12G003230Cucumber (Gy14) v2cgybcmaB176
CmaCh12G003230Cucumber (Gy14) v2cgybcmaB304
CmaCh12G003230Melon (DHL92) v3.6.1cmamedB177
CmaCh12G003230Melon (DHL92) v3.6.1cmamedB183
CmaCh12G003230Silver-seed gourdcarcmaB0183
CmaCh12G003230Silver-seed gourdcarcmaB0273
CmaCh12G003230Silver-seed gourdcarcmaB0893
CmaCh12G003230Silver-seed gourdcarcmaB0938
CmaCh12G003230Cucumber (Chinese Long) v3cmacucB0199
CmaCh12G003230Cucumber (Chinese Long) v3cmacucB0214
CmaCh12G003230Watermelon (97103) v2cmawmbB185
CmaCh12G003230Watermelon (97103) v2cmawmbB193
CmaCh12G003230Watermelon (97103) v2cmawmbB194
CmaCh12G003230Wax gourdcmawgoB0209
CmaCh12G003230Wax gourdcmawgoB0229
CmaCh12G003230Cucurbita maxima (Rimu)cmacmaB036
CmaCh12G003230Cucurbita maxima (Rimu)cmacmaB199
CmaCh12G003230Cucurbita maxima (Rimu)cmacmaB175
CmaCh12G003230Cucurbita maxima (Rimu)cmacmaB183
CmaCh12G003230Cucurbita maxima (Rimu)cmacmaB204
CmaCh12G003230Cucumber (Gy14) v1cgycmaB0447
CmaCh12G003230Cucumber (Gy14) v1cgycmaB0859
CmaCh12G003230Cucurbita moschata (Rifu)cmacmoB167
CmaCh12G003230Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G003230Cucurbita moschata (Rifu)cmacmoB185
CmaCh12G003230Cucurbita moschata (Rifu)cmacmoB199
CmaCh12G003230Wild cucumber (PI 183967)cmacpiB165
CmaCh12G003230Wild cucumber (PI 183967)cmacpiB172
CmaCh12G003230Wild cucumber (PI 183967)cmacpiB186
CmaCh12G003230Cucumber (Chinese Long) v2cmacuB164
CmaCh12G003230Cucumber (Chinese Long) v2cmacuB172
CmaCh12G003230Cucumber (Chinese Long) v2cmacuB184