Carg03912 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAGGCATTTCCAAAGCAGCAAGACGAACATTGGAGAGTCCTTGAATTCTTCAGCGGCATTGGTGGCATAGTACTCTTTTCGCCTATGCTTCTCTCTGTATCCTCCTCGATCTCAGGCGGATATCGTACAGAGGCTTTGTTTGCGATTTCAATTATAACAGAGATACTCTCTACTGAGTGCTGGCGTCGATGCGAAAGTAGTACGAGCTTTTGATATCAACGATAAAGCAAACGACGTTTACGAGCATAATTTCGGCGATCGTCCGCATCAGGTATGATAGAATCATTTTCTTCTTATATCGGTTTGAGAACGCCTTGCTTTCTGCCGTATGAATAAGTATTCGGTGCTTCTCAGTGAAAACATTGAAACTAGTTTTCCTTCAAAATCGAATGCAAATTCTCTTCAGTTGTGGTTTAAGTAGATTGAATTTGAGGCTGTTGAATGTTGTAGCCAAGCTTATTTAATTAGTGAGGAACTACCTCCTGGATACTGATGCACGTATGGTATGATAAGCTTTCAATTTACAGCTAGTATGAATTCACAATGTGAGCGGACAATAGATAGGTACATGAAGTGTTTTTGTTGGAGTATCTGATTCAAATGACTGCCGTTGTGGACTTTCTTTTGAACTGCCAAAGTAAAAGCGTTCTACAATCTCTCAACATCGTCTTCTTCTTTTATTCCTTGTTTCGAGAACGATTATGTTGCTTGTCCATCGCAGGAGTAAAGTTTTGCTGCTTCTCAATACAGATAACGGAAGTATTTTGTTCATTCAGAATTAAGATGCCAATTCTTTTCTATCGTGGATTAAGTAGATTGAATTTGAAGTTATTGAATGTTGAAACATAGCTTATCTATTTCGTTGGAAATTACCTACCTCTGACCGATGGACGTATTTGTTAAGTGATTAGATTACAATTTGAAGCTCGTATGAACTCTCAACGTAGTGGAGAACAAGGTAGCTATATGACGTATTTTTGTTGGAATCTCTTATTCAAATGATTAGCGTAGTGAATTTTTTCTTTCATCGATTCGTCAAACCAAAAGCGTCATGCTATTTAGGAACATGTAACAGGTCATTCATAGCTTCCTTTGCATAGGAGTGTCGGTTTTTTCTTATGAGTTTAGTTATGGTCAAAGCAATCCTACGTGCTTGGTCAAGCTACTGTAAAGACTCAGAGAGCAACAGAGAGCTACAAGAAAGAGGCAGAACTCGAGTCTAAAAAACGAATCATGGAGAGACCTTGA ATGGAGAAGGCATTTCCAAAGCAGCAAGACGAACATTGGAGAGTCCTTGAATTCTTCAGCGGCATTGGTGGCATAAGATACTCTCTACTGAGTGCTGGCGTCGATGCGAAAGTAGTACGAGCTTTTGATATCAACGATAAAGCAAACGACGTTTACGAGCATAATTTCGGCGATCGTCCGCATCAGTTATGGTCAAAGCAATCCTACGTGCTTGGTCAAGCTACTGTAAAGACTCAGAGAGCAACAGAGAGCTACAAGAAAGAGGCAGAACTCGAGTCTAAAAAACGAATCATGGAGAGACCTTGA ATGGAGAAGGCATTTCCAAAGCAGCAAGACGAACATTGGAGAGTCCTTGAATTCTTCAGCGGCATTGGTGGCATAAGATACTCTCTACTGAGTGCTGGCGTCGATGCGAAAGTAGTACGAGCTTTTGATATCAACGATAAAGCAAACGACGTTTACGAGCATAATTTCGGCGATCGTCCGCATCAGTTATGGTCAAAGCAATCCTACGTGCTTGGTCAAGCTACTGTAAAGACTCAGAGAGCAACAGAGAGCTACAAGAAAGAGGCAGAACTCGAGTCTAAAAAACGAATCATGGAGAGACCTTGA MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQLWSKQSYVLGQATVKTQRATESYKKEAELESKKRIMERP
BLAST of Carg03912 vs. NCBI nr
Match: XP_004138735.1 (PREDICTED: DNA (cytosine-5)-methyltransferase isoform X2 [Cucumis sativus] >KGN62921.1 hypothetical protein Csa_2G380010 [Cucumis sativus]) HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23 Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg03912 vs. NCBI nr
Match: XP_008445162.1 (PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 [Cucumis melo]) HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23 Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg03912 vs. NCBI nr
Match: XP_011649803.1 (PREDICTED: DNA (cytosine-5)-methyltransferase isoform X1 [Cucumis sativus]) HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23 Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg03912 vs. NCBI nr
Match: XP_022132298.1 (DNA (cytosine-5)-methyltransferase isoform X1 [Momordica charantia]) HSP 1 Score: 112.8 bits (281), Expect = 6.6e-22 Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0
BLAST of Carg03912 vs. NCBI nr
Match: XP_022961760.1 (tRNA (cytosine(38)-C(5))-methyltransferase [Cucurbita moschata]) HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21 Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0
BLAST of Carg03912 vs. TAIR10
Match: AT5G25480.1 (DNA methyltransferase-2) HSP 1 Score: 80.5 bits (197), Expect = 6.6e-16 Identity = 33/50 (66.00%), Postives = 45/50 (90.00%), Query Frame = 0
BLAST of Carg03912 vs. Swiss-Prot
Match: sp|Q54JH6|CMT1_DICDI (DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum OX=44689 GN=dnmA PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0
BLAST of Carg03912 vs. Swiss-Prot
Match: sp|O55055|TRDMT_MOUSE (tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Trdmt1 PE=1 SV=2) HSP 1 Score: 54.3 bits (129), Expect = 9.1e-07 Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
BLAST of Carg03912 vs. Swiss-Prot
Match: sp|Q4G073|TRDMT_RAT (tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus OX=10116 GN=Trdmt1 PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 2.7e-06 Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
BLAST of Carg03912 vs. Swiss-Prot
Match: sp|O14717|TRDMT_HUMAN (tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens OX=9606 GN=TRDMT1 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 3.5e-06 Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Carg03912 vs. Swiss-Prot
Match: sp|P40999|PMT1M_SCHPO (tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pmt1 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 7.7e-06 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0
BLAST of Carg03912 vs. TrEMBL
Match: tr|A0A1S3BC07|A0A1S3BC07_CUCME (tRNA (Cytosine(38)-C(5))-methyltransferase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488282 PE=3 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.3e-23 Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg03912 vs. TrEMBL
Match: tr|A0A0A0LSE8|A0A0A0LSE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380010 PE=3 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.3e-23 Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Carg03912 vs. TrEMBL
Match: tr|M5XDQ6|M5XDQ6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G473200 PE=3 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19 Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0
BLAST of Carg03912 vs. TrEMBL
Match: tr|A0A251RE89|A0A251RE89_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G473200 PE=3 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19 Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0
BLAST of Carg03912 vs. TrEMBL
Match: tr|A0A2K2A806|A0A2K2A806_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G250800v3 PE=3 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18 Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |