CmaCh12G002110 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G002110
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_6
LocationCma_Chr12 : 1037166 .. 1037843 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCACGTGCACAAAGTTGCTACATGCGGTGGCTCTGTCCCTGCTCATAAGATGTAACCATAGCCCCATTCCATGCGTGCATAAACCATGGACGAGATAAGAGCTTCAACGCCGCCGCTGCAAGACGACGGAGCAGGGAGGTTTTCTGGCTGGAAAGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCATGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTCAAAGCTTTTTTCGTTGGCTGGGTTAGTTAGTTCTGTTACTTTTTTGAATTAGGATTATTTGAACTCTCGAAACTGTATTAACGGAAAATGAAGTTTGGCAGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCAGAGAACACCAAGAAGGGAACTTAATTTGCGCATAATATTCTAGAATGAATCATCAAAAGTTTAGCCCTCCCCCTTGTAACCATTTCGTCTTACAATTTTTCAAATTTTTGTAAATTTTTTATAAATGCTAGGTTCATATTTCATTATATGTATGGTATATTTCCTATTTGATCGGTTTGAATTCGAATTCTATATTTCGAGTTGCGATGGGATCTATTCCTTCTATATCCAATTTAAATCATTGGATCAA

mRNA sequence

TGGCACGTGCACAAAGTTGCTACATGCGGTGGCTCTGTCCCTGCTCATAAGATGTAACCATAGCCCCATTCCATGCGTGCATAAACCATGGACGAGATAAGAGCTTCAACGCCGCCGCTGCAAGACGACGGAGCAGGGAGGTTTTCTGGCTGGAAAGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCATGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTCAAAGCTTTTTTCGTTGGCTGGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCAGAGAACACCAAGAAGGGAACTTAATTTGCGCATAATATTCTAGAATGAATCATCAAAAGTTTAGCCCTCCCCCTTGTAACCATTTCGTCTTACAATTTTTCAAATTTTTGTAAATTTTTTATAAATGCTAGGTTCATATTTCATTATATGTATGGTATATTTCCTATTTGATCGGTTTGAATTCGAATTCTATATTTCGAGTTGCGATGGGATCTATTCCTTCTATATCCAATTTAAATCATTGGATCAA

Coding sequence (CDS)

ATGGACGAGATAAGAGCTTCAACGCCGCCGCTGCAAGACGACGGAGCAGGGAGGTTTTCTGGCTGGAAAGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCATGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTCAAAGCTTTTTTCGTTGGCTGGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCAGAGAACACCAAGAAGGGAACTTAA

Protein sequence

MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT
Homology
[Close]
BLAST of CmaCh12G002110 vs. TrEMBL
Match: E0CNR9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07840 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 23 KEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVE 82
          +++ SV  RVK+ C++ + S QE  RY KA  VG GKKMTA++EKEA +ADL   KMQVE
Sbjct: 12 EQQTSVTSRVKRDCISFFVSLQEGFRYFKALLVGQGKKMTARNEKEATQADLLTEKMQVE 71

Query: 83 ATEAAENTKK 93
          A +AAE+TKK
Sbjct: 72 AADAAEDTKK 81

[Close]
BLAST of CmaCh12G002110 vs. TrEMBL
Match: A0A0J8FY32_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005430 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-11
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 23 KEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVE 82
          + E++++  +K GC++ Y   QE   Y KAF VG GKK+ A++EKEA  ADL+MAKMQV+
Sbjct: 3  QHESTILSNMKNGCLSFYIYFQECFSYCKAFVVGQGKKLLARNEKEATLADLQMAKMQVD 62

Query: 83 ATEAAENTKK 93
          AT+AAEN KK
Sbjct: 63 ATDAAENKKK 72

[Close]
BLAST of CmaCh12G002110 vs. TrEMBL
Match: A0A078IF72_BRANA (BnaC07g27580D protein OS=Brassica napus GN=BnaC07g27580D PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.7e-11
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 27 SVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEA 86
          S+MDR+K  C++V  S +E L YVKAFFVG  K++TAK+EKEA +A L   KMQVEAT+ 
Sbjct: 13 SLMDRMKTSCLSVAVSLKEGLSYVKAFFVGQTKRLTAKNEKEATDAHLTETKMQVEATDE 72

Query: 87 AENTKK 93
          AEN KK
Sbjct: 73 AENAKK 78

[Close]
BLAST of CmaCh12G002110 vs. TrEMBL
Match: A0A067KZ96_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15914 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.7e-11
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60
          M+EIRAS  P         S  K + + M R+KK C+A   S QE  RY+KA FVG  KK
Sbjct: 1  MEEIRASPSPPPPPPPTPTSATKSKPA-MSRMKKECLAFAVSLQEGFRYMKALFVGQAKK 60

Query: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKK 93
          +TAK+EKEA  ADL+  KMQVEA + AE  KK
Sbjct: 61 ITAKNEKEATAADLQANKMQVEAADEAEKIKK 91

[Close]
BLAST of CmaCh12G002110 vs. TrEMBL
Match: C6TC54_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 23 KEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVE 82
          +++ S + R++KGC++  AS Q+  RYVKAFFVG  K +TA++EKEA+EA+L+  KMQVE
Sbjct: 15 RKKTSSVSRLRKGCLSFAASLQKGFRYVKAFFVGQVKTITARNEKEASEAELEATKMQVE 74

Query: 83 ATEAAENTK 92
          AT+AAE+ K
Sbjct: 75 ATDAAEDIK 83

[Close]
BLAST of CmaCh12G002110 vs. TAIR10
Match: AT2G38465.1 (AT2G38465.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-13
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 27 SVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEA 86
          S+ DRVK  C+++  + QE   YVKAFFVG  K++TAK+EKEA EA L   KMQV+AT+ 
Sbjct: 13 SLSDRVKTNCLSMAVTCQEGFSYVKAFFVGQTKRLTAKNEKEATEAHLTETKMQVDATDE 72

Query: 87 AENTKK 93
          AEN KK
Sbjct: 73 AENAKK 78

[Close]
BLAST of CmaCh12G002110 vs. NCBI nr
Match: gi|659088274|ref|XP_008444894.1| (PREDICTED: uncharacterized protein LOC103488109 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 7.0e-30
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 1 

Query: 1  MDEIRA--STPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWG 60
          MDE RA  STPP QDDGA  FSG K+EASVMDRVKKGC + YASSQE L YVKAFFVGWG
Sbjct: 1  MDETRAATSTPP-QDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWG 60

Query: 61 KKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 95
          KK+TAKSEKEAAEADL+ AKMQV+ATEAAEN K GT
Sbjct: 61 KKITAKSEKEAAEADLRTAKMQVQATEAAENLKNGT 95

[Close]
BLAST of CmaCh12G002110 vs. NCBI nr
Match: gi|470101968|ref|XP_004287438.1| (PREDICTED: uncharacterized protein LOC101307528 [Fragaria vesca subsp. vesca])

HSP 1 Score: 84.7 bits (208), Expect = 9.2e-14
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1 

Query: 13 DDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEA 72
          +DGA R    + E S + R+ KGC++  AS QE  RYVKAFFVG  K++TA+SEKEA EA
Sbjct: 2  EDGANR---QQAEVSGLSRMNKGCLSFTASLQEGFRYVKAFFVGQAKRLTARSEKEATEA 61

Query: 73 DLKMAKMQVEATEAAENTK 92
          DL  AKMQVEAT+AAE+TK
Sbjct: 62 DLVTAKMQVEATDAAEDTK 77

[Close]
BLAST of CmaCh12G002110 vs. NCBI nr
Match: gi|1009137421|ref|XP_015886045.1| (PREDICTED: uncharacterized protein LOC107421335 [Ziziphus jujuba])

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-13
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 1  MDEIRASTPPLQDDGAGRF-------SGWKEEASVMDRVKKGCMAVYASSQEALRYVKAF 60
          M+EIR+S  P +    G         S  K E S+  R+KK C+A   S QE   YVKAF
Sbjct: 1  MEEIRSSESPPETHSPGTGAANPAVGSSKKGETSMASRMKKDCLAFLVSVQEGFEYVKAF 60

Query: 61 FVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAENTK 92
          FVG  KKMTAKSE+EAA ADL+ +KMQ EA +AAE+ K
Sbjct: 61 FVGQAKKMTAKSEEEAARADLQASKMQAEAADAAEDVK 98

[Close]
BLAST of CmaCh12G002110 vs. NCBI nr
Match: gi|225459040|ref|XP_002285628.1| (PREDICTED: uncharacterized protein LOC100243668 [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 23 KEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVE 82
          +++ SV  RVK+ C++ + S QE  RY KA  VG GKKMTA++EKEA +ADL   KMQVE
Sbjct: 12 EQQTSVTSRVKRDCISFFVSLQEGFRYFKALLVGQGKKMTARNEKEATQADLLTEKMQVE 71

Query: 83 ATEAAENTKK 93
          A +AAE+TKK
Sbjct: 72 AADAAEDTKK 81

[Close]
BLAST of CmaCh12G002110 vs. NCBI nr
Match: gi|870869816|gb|KMT20561.1| (hypothetical protein BVRB_1g005430 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-11
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 23 KEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVE 82
          + E++++  +K GC++ Y   QE   Y KAF VG GKK+ A++EKEA  ADL+MAKMQV+
Sbjct: 3  QHESTILSNMKNGCLSFYIYFQECFSYCKAFVVGQGKKLLARNEKEATLADLQMAKMQVD 62

Query: 83 ATEAAENTKK 93
          AT+AAEN KK
Sbjct: 63 ATDAAENKKK 72

The following BLAST results are available for this feature:
BLAST of CmaCh12G002110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G002110 vs. TrEMBL
Match NameE-valueIdentityDescription
E0CNR9_VITVI1.8e-1157.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07840 PE=4 SV=... [more]
A0A0J8FY32_BETVU5.1e-1154.29Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005430 PE=4 S... [more]
A0A078IF72_BRANA6.7e-1160.61BnaC07g27580D protein OS=Brassica napus GN=BnaC07g27580D PE=4 SV=1[more]
A0A067KZ96_JATCU6.7e-1151.09Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15914 PE=4 SV=1[more]
C6TC54_SOYBN1.5e-1055.07Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of CmaCh12G002110 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G38465.12.9e-1357.58 unknown protein[more]
BLAST of CmaCh12G002110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088274|ref|XP_008444894.1|7.0e-3080.21PREDICTED: uncharacterized protein LOC103488109 [Cucumis melo][more]
gi|470101968|ref|XP_004287438.1|9.2e-1460.76PREDICTED: uncharacterized protein LOC101307528 [Fragaria vesca subsp. vesca][more]
gi|1009137421|ref|XP_015886045.1|4.6e-1351.02PREDICTED: uncharacterized protein LOC107421335 [Ziziphus jujuba][more]
gi|225459040|ref|XP_002285628.1|2.5e-1157.14PREDICTED: uncharacterized protein LOC100243668 [Vitis vinifera][more]
gi|870869816|gb|KMT20561.1|7.3e-1154.29hypothetical protein BVRB_1g005430 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G002110.1CmaCh12G002110.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 60..87
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G002110Cla022138Watermelon (97103) v1cmawmB152
CmaCh12G002110MELO3C011071Melon (DHL92) v3.5.1cmameB158
CmaCh12G002110ClCG08G011540Watermelon (Charleston Gray)cmawcgB174
CmaCh12G002110CSPI02G21480Wild cucumber (PI 183967)cmacpiB176
CmaCh12G002110CmoCh12G001660Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G002110Lsi08G010100Bottle gourd (USVL1VR-Ls)cmalsiB189
CmaCh12G002110MELO3C011071.2Melon (DHL92) v3.6.1cmamedB172
CmaCh12G002110Cla97C08G154560Watermelon (97103) v2cmawmbB199
CmaCh12G002110Bhi04G001121Wax gourdcmawgoB0201
CmaCh12G002110Carg22501Silver-seed gourdcarcmaB1140
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G002110Cucumber (Chinese Long) v3cmacucB0204
CmaCh12G002110Cucumber (Chinese Long) v3cmacucB0210
CmaCh12G002110Cucumber (Chinese Long) v3cmacucB0222
CmaCh12G002110Watermelon (97103) v2cmawmbB162
CmaCh12G002110Watermelon (97103) v2cmawmbB165
CmaCh12G002110Watermelon (97103) v2cmawmbB166
CmaCh12G002110Wax gourdcmawgoB0223
CmaCh12G002110Cucurbita maxima (Rimu)cmacmaB035
CmaCh12G002110Cucurbita maxima (Rimu)cmacmaB200
CmaCh12G002110Cucurbita maxima (Rimu)cmacmaB187
CmaCh12G002110Cucurbita maxima (Rimu)cmacmaB194
CmaCh12G002110Cucurbita maxima (Rimu)cmacmaB207
CmaCh12G002110Cucumber (Gy14) v1cgycmaB0223
CmaCh12G002110Cucumber (Gy14) v1cgycmaB0225
CmaCh12G002110Cucumber (Gy14) v1cgycmaB0449
CmaCh12G002110Cucumber (Gy14) v1cgycmaB0856
CmaCh12G002110Cucurbita moschata (Rifu)cmacmoB200
CmaCh12G002110Cucurbita moschata (Rifu)cmacmoB187
CmaCh12G002110Cucurbita moschata (Rifu)cmacmoB194
CmaCh12G002110Cucurbita moschata (Rifu)cmacmoB205
CmaCh12G002110Wild cucumber (PI 183967)cmacpiB182
CmaCh12G002110Wild cucumber (PI 183967)cmacpiB195
CmaCh12G002110Wild cucumber (PI 183967)cmacpiB202
CmaCh12G002110Cucumber (Chinese Long) v2cmacuB176
CmaCh12G002110Cucumber (Chinese Long) v2cmacuB180
CmaCh12G002110Cucumber (Chinese Long) v2cmacuB192
CmaCh12G002110Cucumber (Chinese Long) v2cmacuB199
CmaCh12G002110Melon (DHL92) v3.5.1cmameB170
CmaCh12G002110Melon (DHL92) v3.5.1cmameB185
CmaCh12G002110Melon (DHL92) v3.5.1cmameB186
CmaCh12G002110Watermelon (Charleston Gray)cmawcgB143
CmaCh12G002110Watermelon (Charleston Gray)cmawcgB152
CmaCh12G002110Watermelon (Charleston Gray)cmawcgB155
CmaCh12G002110Watermelon (Charleston Gray)cmawcgB169
CmaCh12G002110Watermelon (97103) v1cmawmB148
CmaCh12G002110Watermelon (97103) v1cmawmB164
CmaCh12G002110Watermelon (97103) v1cmawmB167
CmaCh12G002110Watermelon (97103) v1cmawmB174
CmaCh12G002110Cucurbita pepo (Zucchini)cmacpeB169
CmaCh12G002110Cucurbita pepo (Zucchini)cmacpeB174
CmaCh12G002110Cucurbita pepo (Zucchini)cmacpeB180
CmaCh12G002110Cucurbita pepo (Zucchini)cmacpeB188
CmaCh12G002110Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G002110Bottle gourd (USVL1VR-Ls)cmalsiB164
CmaCh12G002110Bottle gourd (USVL1VR-Ls)cmalsiB169
CmaCh12G002110Cucumber (Gy14) v2cgybcmaB180
CmaCh12G002110Cucumber (Gy14) v2cgybcmaB301
CmaCh12G002110Cucumber (Gy14) v2cgybcmaB716
CmaCh12G002110Cucumber (Gy14) v2cgybcmaB722
CmaCh12G002110Melon (DHL92) v3.6.1cmamedB203
CmaCh12G002110Melon (DHL92) v3.6.1cmamedB185
CmaCh12G002110Melon (DHL92) v3.6.1cmamedB201
CmaCh12G002110Silver-seed gourdcarcmaB0074
CmaCh12G002110Silver-seed gourdcarcmaB0078
CmaCh12G002110Silver-seed gourdcarcmaB0556
CmaCh12G002110Silver-seed gourdcarcmaB0558
CmaCh12G002110Silver-seed gourdcarcmaB0892