CmaCh12G000440 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G000440
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr12 : 167857 .. 168192 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGTCAATTTGTCGTTGTTGTTGCTCTCGTCCTCTTCGCCGTTGTCGGCTTCGCCTCCGCTGCCGAACCTGCTGAAACTCCCGAGGCCGGTGCTAATAAAACCGACGCCGGCTCGGCTCCCGGAGCCGATGGCAAGATTGGAAACACCACCGACGGGGCCGCGGCTCCCGGTGGTAGCAACGATACCGTTGAAGCCCCAGTCGGTGAACCTGGCGCTGCAGGAGCTTCCTCTGGGCCCGCTGAATCACCCAAGAGCGGTGCCTCCACCGTGAAATTTTCATTTTCCGCCGTCGGTGGTGTGGCTGCTGTTGCCGGCGTTATCTTGTTCTAA

mRNA sequence

ATGGCACGTCAATTTGTCGTTGTTGTTGCTCTCGTCCTCTTCGCCGTTGTCGGCTTCGCCTCCGCTGCCGAACCTGCTGAAACTCCCGAGGCCGGTGCTAATAAAACCGACGCCGGCTCGGCTCCCGGAGCCGATGGCAAGATTGGAAACACCACCGACGGGGCCGCGGCTCCCGGTGGTAGCAACGATACCGTTGAAGCCCCAGTCGGTGAACCTGGCGCTGCAGGAGCTTCCTCTGGGCCCGCTGAATCACCCAAGAGCGGTGCCTCCACCGTGAAATTTTCATTTTCCGCCGTCGGTGGTGTGGCTGCTGTTGCCGGCGTTATCTTGTTCTAA

Coding sequence (CDS)

ATGGCACGTCAATTTGTCGTTGTTGTTGCTCTCGTCCTCTTCGCCGTTGTCGGCTTCGCCTCCGCTGCCGAACCTGCTGAAACTCCCGAGGCCGGTGCTAATAAAACCGACGCCGGCTCGGCTCCCGGAGCCGATGGCAAGATTGGAAACACCACCGACGGGGCCGCGGCTCCCGGTGGTAGCAACGATACCGTTGAAGCCCCAGTCGGTGAACCTGGCGCTGCAGGAGCTTCCTCTGGGCCCGCTGAATCACCCAAGAGCGGTGCCTCCACCGTGAAATTTTCATTTTCCGCCGTCGGTGGTGTGGCTGCTGTTGCCGGCGTTATCTTGTTCTAA

Protein sequence

MARQFVVVVALVLFAVVGFASAAEPAETPEAGANKTDAGSAPGADGKIGNTTDGAAAPGGSNDTVEAPVGEPGAAGASSGPAESPKSGASTVKFSFSAVGGVAAVAGVILF
Homology
[Close]
BLAST of CmaCh12G000440 vs. TrEMBL
Match: A0A0A0LQR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349700 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 1 

Query: 1   MARQFVVVVALVLFAVVGFASAAEPAETPEAGANKTDAGS--APGADGKIGNTTDGAAAP 60
           MARQFVV  ALVLFAV+GF  AA PAE P+  A+    G+  APGA+ +IGNT +GA AP
Sbjct: 1   MARQFVVF-ALVLFAVIGFTCAATPAEAPKGSADTAGVGAQLAPGAENEIGNT-EGADAP 60

Query: 61  GGSNDTVEAPVGEPGAAGASSGPAESPKSGASTVKFSFSAVGGVAAVAGVILF 112
            GS D VEAPVG PGA      PA +P + ++     FSA   V AVAG   F
Sbjct: 61  AGSEDVVEAPVGGPGATAGGFVPAPAPSAASA---LEFSAAAAVTAVAGFFFF 108

[Close]
BLAST of CmaCh12G000440 vs. NCBI nr
Match: gi|700207217|gb|KGN62336.1| (hypothetical protein Csa_2G349700 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 1 

Query: 1   MARQFVVVVALVLFAVVGFASAAEPAETPEAGANKTDAGS--APGADGKIGNTTDGAAAP 60
           MARQFVV  ALVLFAV+GF  AA PAE P+  A+    G+  APGA+ +IGNT +GA AP
Sbjct: 1   MARQFVVF-ALVLFAVIGFTCAATPAEAPKGSADTAGVGAQLAPGAENEIGNT-EGADAP 60

Query: 61  GGSNDTVEAPVGEPGAAGASSGPAESPKSGASTVKFSFSAVGGVAAVAGVILF 112
            GS D VEAPVG PGA      PA +P + ++     FSA   V AVAG   F
Sbjct: 61  AGSEDVVEAPVGGPGATAGGFVPAPAPSAASA---LEFSAAAAVTAVAGFFFF 108

The following BLAST results are available for this feature:
BLAST of CmaCh12G000440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G000440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQR1_CUCSA2.7e-1153.10Uncharacterized protein OS=Cucumis sativus GN=Csa_2G349700 PE=4 SV=1[more]
BLAST of CmaCh12G000440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh12G000440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207217|gb|KGN62336.1|3.9e-1153.10hypothetical protein Csa_2G349700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G000440.1CmaCh12G000440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G000440Carg21842Silver-seed gourdcarcmaB0704
CmaCh12G000440Carg20482Silver-seed gourdcarcmaB0881
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G000440Cucurbita maxima (Rimu)cmacmaB176
CmaCh12G000440Cucurbita maxima (Rimu)cmacmaB189
CmaCh12G000440Cucurbita maxima (Rimu)cmacmaB193
CmaCh12G000440Cucumber (Gy14) v1cgycmaB0123
CmaCh12G000440Cucumber (Gy14) v1cgycmaB1087
CmaCh12G000440Wild cucumber (PI 183967)cmacpiB190
CmaCh12G000440Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G000440Cucurbita moschata (Rifu)cmacmoB189
CmaCh12G000440Cucurbita moschata (Rifu)cmacmoB193
CmaCh12G000440Wild cucumber (PI 183967)cmacpiB161
CmaCh12G000440Wild cucumber (PI 183967)cmacpiB167
CmaCh12G000440Cucumber (Chinese Long) v2cmacuB166
CmaCh12G000440Cucumber (Chinese Long) v2cmacuB189
CmaCh12G000440Melon (DHL92) v3.5.1cmameB147
CmaCh12G000440Melon (DHL92) v3.5.1cmameB163
CmaCh12G000440Watermelon (Charleston Gray)cmawcgB161
CmaCh12G000440Watermelon (Charleston Gray)cmawcgB173
CmaCh12G000440Watermelon (97103) v1cmawmB154
CmaCh12G000440Watermelon (97103) v1cmawmB160
CmaCh12G000440Cucurbita pepo (Zucchini)cmacpeB167
CmaCh12G000440Cucurbita pepo (Zucchini)cmacpeB173
CmaCh12G000440Cucurbita pepo (Zucchini)cmacpeB186
CmaCh12G000440Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G000440Bottle gourd (USVL1VR-Ls)cmalsiB172
CmaCh12G000440Bottle gourd (USVL1VR-Ls)cmalsiB188
CmaCh12G000440Cucumber (Gy14) v2cgybcmaB170
CmaCh12G000440Cucumber (Gy14) v2cgybcmaB591
CmaCh12G000440Melon (DHL92) v3.6.1cmamedB160
CmaCh12G000440Melon (DHL92) v3.6.1cmamedB178
CmaCh12G000440Silver-seed gourdcarcmaB0336
CmaCh12G000440Cucumber (Chinese Long) v3cmacucB0186
CmaCh12G000440Cucumber (Chinese Long) v3cmacucB0194
CmaCh12G000440Cucumber (Chinese Long) v3cmacucB0218
CmaCh12G000440Watermelon (97103) v2cmawmbB182
CmaCh12G000440Watermelon (97103) v2cmawmbB198
CmaCh12G000440Wax gourdcmawgoB0211
CmaCh12G000440Wax gourdcmawgoB0222