Carg20482 (gene) Silver-seed gourd

Overview
NameCarg20482
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_172 : 160129 .. 160455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGTCAATTTGTTGTTGTTGTTGCTCTCGTCCTCTTCGCCGTTGTCGGCTTCGCCTCCGCTGCCGTACCTGCTGAAACTCCCAAGGCCGGTGCTAATAAAACCGAGGCTCCCGGCGCCGATGGCAAGATTGGAAACACCACCGACGGGGCCGCGGCTCCCGGTGGTAGCAACGATACCGTTGAAGGCCCAGTCGGTGGACCTGGCGCTGCAGGAGCTTCCTCTGGGCCCGCTGAATCACCCAAGAGCGATGCCTCCACCGTGAAATTTTCATTTTCCGCCGTCGGTGGTGTGGCTGCTGTTGCCGGCGTTTTCTTGTTCTAA

mRNA sequence

ATGGCACGTCAATTTGTTGTTGTTGTTGCTCTCGTCCTCTTCGCCGTTGTCGGCTTCGCCTCCGCTGCCGTACCTGCTGAAACTCCCAAGGCCGGTGCTAATAAAACCGAGGCTCCCGGCGCCGATGGCAAGATTGGAAACACCACCGACGGGGCCGCGGCTCCCGGTGGTAGCAACGATACCGTTGAAGGCCCAGTCGGTGGACCTGGCGCTGCAGGAGCTTCCTCTGGGCCCGCTGAATCACCCAAGAGCGATGCCTCCACCGTGAAATTTTCATTTTCCGCCGTCGGTGGTGTGGCTGCTGTTGCCGGCGTTTTCTTGTTCTAA

Coding sequence (CDS)

ATGGCACGTCAATTTGTTGTTGTTGTTGCTCTCGTCCTCTTCGCCGTTGTCGGCTTCGCCTCCGCTGCCGTACCTGCTGAAACTCCCAAGGCCGGTGCTAATAAAACCGAGGCTCCCGGCGCCGATGGCAAGATTGGAAACACCACCGACGGGGCCGCGGCTCCCGGTGGTAGCAACGATACCGTTGAAGGCCCAGTCGGTGGACCTGGCGCTGCAGGAGCTTCCTCTGGGCCCGCTGAATCACCCAAGAGCGATGCCTCCACCGTGAAATTTTCATTTTCCGCCGTCGGTGGTGTGGCTGCTGTTGCCGGCGTTTTCTTGTTCTAA

Protein sequence

MARQFVVVVALVLFAVVGFASAAVPAETPKAGANKTEAPGADGKIGNTTDGAAAPGGSNDTVEGPVGGPGAAGASSGPAESPKSDASTVKFSFSAVGGVAAVAGVFLF
Homology
[Close]
BLAST of Carg20482 vs. NCBI nr
Match: XP_022951863.1 (anther-specific protein BCP1-like [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 8.6e-20
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MARQFVVVVALVLFAVVGFASAAVPAETPKAGANKTEAPGADGKIGXXXXXXXXXXXXXX 60
           MARQF VVVALVLFAVVGFASAAVPAETPKAGANKTEAPGADGKIGXXXXXXXXXXXXXX
Sbjct: 1   MARQF-VVVALVLFAVVGFASAAVPAETPKAGANKTEAPGADGKIGXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXSDASTVKFSFSAVGGVAAVAGVFLF 109
           XXXXXXXXXXXXXXXXXXXXXXXSDASTVKFSFSAVGGVAAVAGVFLF
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXSDASTVKFSFSAVGGVAAVAGVFLF 107

[Close]
BLAST of Carg20482 vs. NCBI nr
Match: XP_023002873.1 (anther-specific protein BCP1-like [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-17
Identity = 75/111 (67.57%), Postives = 77/111 (69.37%), Query Frame = 0 

Query: 1   MARQFVVVVALVLFAVVGFASAAVPAETPKAGANKTE---APGADGKIGXXXXXXXXXXX 60
           MARQFVVVVALVLFAVVGFASAA PAETP+AGANKT+   APGADGKIG  XXXXXXXXX
Sbjct: 1   MARQFVVVVALVLFAVVGFASAAEPAETPEAGANKTDAGSAPGADGKIGNTXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXSDASTVKFSFSAVGGVAAVAGVFLF 109
                                     S ASTVKFSFSAVGGVAAVAGV LF
Sbjct: 61  SNDTVEAPVGEPGAAGASSGPAESPKSGASTVKFSFSAVGGVAAVAGVILF 111

The following BLAST results are available for this feature:
BLAST of Carg20482 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951863.18.6e-2099.07anther-specific protein BCP1-like [Cucurbita moschata][more]
XP_023002873.16.8e-1767.57anther-specific protein BCP1-like [Cucurbita maxima][more]
BLAST of Carg20482 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg20482 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg20482 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20482-RACarg20482-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..85

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20482CmaCh12G000440Cucurbita maxima (Rimu)carcmaB0881
Carg20482Cp4.1LG11g00390Cucurbita pepo (Zucchini)carcpeB0887
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg20482Carg21842Silver-seed gourdcarcarB488
The following block(s) are covering this gene:
GeneOrganismBlock
Carg20482Wax gourdcarwgoB0740
Carg20482Wax gourdcarwgoB0743
Carg20482Wax gourdcarwgoB0744
Carg20482Silver-seed gourdcarcarB284
Carg20482Silver-seed gourdcarcarB479
Carg20482Cucumber (Gy14) v2carcgybB0620
Carg20482Cucumber (Gy14) v2carcgybB0622
Carg20482Cucumber (Gy14) v2carcgybB0623
Carg20482Cucumber (Gy14) v1carcgyB0700
Carg20482Cucumber (Gy14) v1carcgyB0697
Carg20482Cucurbita maxima (Rimu)carcmaB0884
Carg20482Cucurbita maxima (Rimu)carcmaB0885
Carg20482Cucurbita moschata (Rifu)carcmoB0855
Carg20482Cucurbita moschata (Rifu)carcmoB0858
Carg20482Cucurbita moschata (Rifu)carcmoB0860
Carg20482Cucurbita pepo (Zucchini)carcpeB0886
Carg20482Cucurbita pepo (Zucchini)carcpeB0888
Carg20482Cucurbita pepo (Zucchini)carcpeB0889
Carg20482Wild cucumber (PI 183967)carcpiB0654
Carg20482Wild cucumber (PI 183967)carcpiB0656
Carg20482Wild cucumber (PI 183967)carcpiB0657
Carg20482Cucumber (Chinese Long) v2carcuB0647
Carg20482Cucumber (Chinese Long) v2carcuB0648
Carg20482Cucumber (Chinese Long) v3carcucB0655
Carg20482Cucumber (Chinese Long) v3carcucB0657
Carg20482Cucumber (Chinese Long) v3carcucB0658
Carg20482Bottle gourd (USVL1VR-Ls)carlsiB567
Carg20482Bottle gourd (USVL1VR-Ls)carlsiB568
Carg20482Melon (DHL92) v3.5.1carmeB0623
Carg20482Melon (DHL92) v3.5.1carmeB0624
Carg20482Melon (DHL92) v3.6.1carmedB0630
Carg20482Melon (DHL92) v3.6.1carmedB0631
Carg20482Melon (DHL92) v3.6.1carmedB0632
Carg20482Watermelon (Charleston Gray)carwcgB0604
Carg20482Watermelon (Charleston Gray)carwcgB0605
Carg20482Watermelon (97103) v1carwmB0621
Carg20482Watermelon (97103) v1carwmB0623
Carg20482Watermelon (97103) v1carwmB0624
Carg20482Watermelon (97103) v2carwmbB0649
Carg20482Watermelon (97103) v2carwmbB0650