CmaCh11G011400 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G011400
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description50S ribosomal protein L18, putative
LocationCma_Chr11 : 6534820 .. 6535185 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATTTAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCATTGCTTCGGCTGCAAGCTCGCAGGAGAAGGCACTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGTAAAGATCGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATCATGGTAAGATCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

mRNA sequence

ATGTTATTTAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCATTGCTTCGGCTGCAAGCTCGCAGGAGAAGGCACTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGTAAAGATCGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATCATGGTAAGATCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Coding sequence (CDS)

ATGTTATTTAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCATTGCTTCGGCTGCAAGCTCGCAGGAGAAGGCACTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGTAAAGATCGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATCATGGTAAGATCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Protein sequence

MLFRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMESTRDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL
Homology
[Close]
BLAST of CmaCh11G011400 vs. Swiss-Prot
Match: RL18_ALISL (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplR PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1 

Query: 28  LKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMESTRDVAAAVKIGKLLGERLLLK 87
           L +H T ++  AQVI    + + +AAS+ EKA+R  + +T + AAAV IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 88  GIPAVCVHLKREQKYHGKIKAVIDSVREAGIK 120
           GI  V       Q YHG++ A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]
BLAST of CmaCh11G011400 vs. Swiss-Prot
Match: RL18_VIBPR (50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-10
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 28  LKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMESTRDVAAAVKIGKLLGERLLLK 87
           L +H T ++V AQVI S  + + +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 88  GIPAVCVHLKREQKYHGKIKAVIDSVREAGIK 120
           G+  V       Q YHG++ A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]
BLAST of CmaCh11G011400 vs. Swiss-Prot
Match: RL18_VIBTL (50S ribosomal protein L18 OS=Vibrio tasmaniensis (strain LGP32) GN=rplR PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-10
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 1 

Query: 28  LKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMESTRDVAAAVKIGKLLGERLLLK 87
           L +H T ++V AQVI +  + + +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 88  GIPAVCVHLKREQKYHGKIKAVIDSVREAGIK 120
           G+ +V       Q YHG++ A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]
BLAST of CmaCh11G011400 vs. Swiss-Prot
Match: RL18_VIBPA (50S ribosomal protein L18 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplR PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-10
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 28  LKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMESTRDVAAAVKIGKLLGERLLLK 87
           L +H T ++V AQVI +  + + +AAS+ EKA+R  ++ T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKAVGKAVAERALEK 85

Query: 88  GIPAVCVHLKREQKYHGKIKAVIDSVREAGIK 120
           G+ AV       Q YHG++ A+ +S REAG+K
Sbjct: 86  GVTAVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]
BLAST of CmaCh11G011400 vs. Swiss-Prot
Match: RL18_VIBVU (50S ribosomal protein L18 OS=Vibrio vulnificus (strain CMCP6) GN=rplR PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-10
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1 

Query: 28  LKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMESTRDVAAAVKIGKLLGERLLLK 87
           L +H T ++V AQVI +  + + +AAS+ EKA+R  ++ T ++ AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIEAAKAVGKAVAERALEK 85

Query: 88  GIPAVCVHLKREQKYHGKIKAVIDSVREAGIK 120
           G+  V       Q YHG++ A+ DS REAG+K
Sbjct: 86  GVSTVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]
BLAST of CmaCh11G011400 vs. TrEMBL
Match: A0A0A0L0Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-49
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 8   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 67
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA +ASAASSQEKAL+ SMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 68  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQ+YHGK+KAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of CmaCh11G011400 vs. TrEMBL
Match: A0A061F2F1_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_026668 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-46
Identity = 100/118 (84.75%), Postives = 111/118 (94.07%), Query Frame = 1 

Query: 4   RVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPS 63
           ++ EMVIPPPVRPPR+T++LKPYVLKMHFTNKYVSAQVIHS TAT+AS+ASSQEKALR S
Sbjct: 119 KIFEMVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRAS 178

Query: 64  MESTRDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           MESTRDVAAA KIGKLLGERLLLK IPAV V LKREQKYHGK+KAVIDS++EAG+KLL
Sbjct: 179 MESTRDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKLL 236

[Close]
BLAST of CmaCh11G011400 vs. TrEMBL
Match: A0A0B0MZ43_GOSAR (50S ribosomal L18 OS=Gossypium arboreum GN=F383_28504 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.3e-46
Identity = 100/120 (83.33%), Postives = 109/120 (90.83%), Query Frame = 1 

Query: 2   LFRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALR 61
           L  V EMVIPPPVRPPR+ ++LKPY+LKMHFTNKYVSAQVIHS TAT+ASAASSQEKALR
Sbjct: 45  LIAVTEMVIPPPVRPPRILKFLKPYILKMHFTNKYVSAQVIHSPTATVASAASSQEKALR 104

Query: 62  PSMESTRDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 121
            SMESTRDVAAA KIGK+L ERLLLK IPAV V LKREQKYHGK+KAVIDS+REAG+KLL
Sbjct: 105 SSMESTRDVAAAAKIGKILAERLLLKEIPAVSVSLKREQKYHGKVKAVIDSLREAGVKLL 164

[Close]
BLAST of CmaCh11G011400 vs. TrEMBL
Match: A0A059BKV1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00277 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-45
Identity = 97/114 (85.09%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 8   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 67
           MVI PP +PPR+  +LKPYVLKMHFTNK+VSAQVIHS TAT+AS+ASSQEKALRPSM+ST
Sbjct: 1   MVILPPAKPPRIINFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRPSMDST 60

Query: 68  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           RDVAAA KIGK+LGERLLLKGIPAV VHLKREQKYHGK+KAVIDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKILGERLLLKGIPAVAVHLKREQKYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of CmaCh11G011400 vs. TrEMBL
Match: I1JJR9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G307100 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.8e-45
Identity = 96/114 (84.21%), Postives = 108/114 (94.74%), Query Frame = 1 

Query: 8   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 67
           MVIPPPVRPPR+TQ+LKPYVLKMHFTNKYVSAQVIH+ TAT+AS+ASSQEKALR S+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 68  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           RDVAAA KIGK+L ERLLLK IPAV VHLKREQKYHGK+KAVIDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]
BLAST of CmaCh11G011400 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-44
Identity = 89/114 (78.07%), Postives = 102/114 (89.47%), Query Frame = 1 

Query: 8   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 67
           MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TAT+A +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 68  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           RDVAAA KIGK+LGERLL+K IPAV + +K+EQ+YHGK+KAVIDSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of CmaCh11G011400 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-10
Identity = 32/101 (31.68%), Postives = 61/101 (60.40%), Query Frame = 1 

Query: 18  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMESTRDVAAAVKIG 77
           R   Y++P++L + F+ K++ A+V+H  T+ + S A++  + +R ++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 78  KLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGI 119
           KL+ ER +   + AV    ++ ++  GK+  VID+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]
BLAST of CmaCh11G011400 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-07
Identity = 28/101 (27.72%), Postives = 53/101 (52.48%), Query Frame = 1 

Query: 18  RLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMESTRDVAAAVKIG 77
           R   Y++P+ L +  + ++VSA + H  T    + A +  K ++  + S  D+ A + IG
Sbjct: 127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186

Query: 78  KLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGI 119
           ++L ER     +       + + K+ GKI+AV+ S+ + GI
Sbjct: 187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]
BLAST of CmaCh11G011400 vs. NCBI nr
Match: gi|659125466|ref|XP_008462699.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 4.6e-50
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 8   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 67
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETAT+ASAASSQEKALR SMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 68  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+KAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of CmaCh11G011400 vs. NCBI nr
Match: gi|449453185|ref|XP_004144339.1| (PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-49
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 8   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 67
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA +ASAASSQEKAL+ SMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 68  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQ+YHGK+KAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of CmaCh11G011400 vs. NCBI nr
Match: gi|590644203|ref|XP_007031018.1| (Ribosomal L18p/L5e family protein [Theobroma cacao])

HSP 1 Score: 193.4 bits (490), Expect = 2.4e-46
Identity = 100/118 (84.75%), Postives = 111/118 (94.07%), Query Frame = 1 

Query: 4   RVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPS 63
           ++ EMVIPPPVRPPR+T++LKPYVLKMHFTNKYVSAQVIHS TAT+AS+ASSQEKALR S
Sbjct: 119 KIFEMVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRAS 178

Query: 64  MESTRDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           MESTRDVAAA KIGKLLGERLLLK IPAV V LKREQKYHGK+KAVIDS++EAG+KLL
Sbjct: 179 MESTRDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKLL 236

[Close]
BLAST of CmaCh11G011400 vs. NCBI nr
Match: gi|728822323|gb|KHG04764.1| (50S ribosomal L18 [Gossypium arboreum])

HSP 1 Score: 191.4 bits (485), Expect = 9.0e-46
Identity = 100/120 (83.33%), Postives = 109/120 (90.83%), Query Frame = 1 

Query: 2   LFRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALR 61
           L  V EMVIPPPVRPPR+ ++LKPY+LKMHFTNKYVSAQVIHS TAT+ASAASSQEKALR
Sbjct: 45  LIAVTEMVIPPPVRPPRILKFLKPYILKMHFTNKYVSAQVIHSPTATVASAASSQEKALR 104

Query: 62  PSMESTRDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 121
            SMESTRDVAAA KIGK+L ERLLLK IPAV V LKREQKYHGK+KAVIDS+REAG+KLL
Sbjct: 105 SSMESTRDVAAAAKIGKILAERLLLKEIPAVSVSLKREQKYHGKVKAVIDSLREAGVKLL 164

[Close]
BLAST of CmaCh11G011400 vs. NCBI nr
Match: gi|702361554|ref|XP_010059974.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis])

HSP 1 Score: 190.3 bits (482), Expect = 2.0e-45
Identity = 97/114 (85.09%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 8   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 67
           MVI PP +PPR+  +LKPYVLKMHFTNK+VSAQVIHS TAT+AS+ASSQEKALRPSM+ST
Sbjct: 1   MVILPPAKPPRIINFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRPSMDST 60

Query: 68  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 122
           RDVAAA KIGK+LGERLLLKGIPAV VHLKREQKYHGK+KAVIDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKILGERLLLKGIPAVAVHLKREQKYHGKVKAVIDSVREAGVKLL 114

The following BLAST results are available for this feature:
BLAST of CmaCh11G011400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL18_ALISL2.1e-1044.5750S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplR PE=... [more]
RL18_VIBPR3.6e-1042.3950S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1[more]
RL18_VIBTL6.1e-1041.3050S ribosomal protein L18 OS=Vibrio tasmaniensis (strain LGP32) GN=rplR PE=3 SV=... [more]
RL18_VIBPA8.0e-1042.3950S ribosomal protein L18 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD... [more]
RL18_VIBVU8.0e-1041.3050S ribosomal protein L18 OS=Vibrio vulnificus (strain CMCP6) GN=rplR PE=3 SV=1[more]
BLAST of CmaCh11G011400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Z6_CUCSA2.1e-4991.23Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437000 PE=4 SV=1[more]
A0A061F2F1_THECC1.7e-4684.75Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_026668 PE=4 SV=1[more]
A0A0B0MZ43_GOSAR6.3e-4683.3350S ribosomal L18 OS=Gossypium arboreum GN=F383_28504 PE=4 SV=1[more]
A0A059BKV1_EUCGR1.4e-4585.09Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00277 PE=4 SV=1[more]
I1JJR9_SOYBN1.8e-4584.21Uncharacterized protein OS=Glycine max GN=GLYMA_02G307100 PE=4 SV=1[more]
BLAST of CmaCh11G011400 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27820.15.3e-4478.07 Ribosomal L18p/L5e family protein[more]
AT3G20230.12.2e-1031.68 Ribosomal L18p/L5e family protein[more]
AT1G08845.22.3e-0727.72 Ribosomal L18p/L5e family protein[more]
BLAST of CmaCh11G011400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125466|ref|XP_008462699.1|4.6e-5092.98PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo][more]
gi|449453185|ref|XP_004144339.1|3.0e-4991.23PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus][more]
gi|590644203|ref|XP_007031018.1|2.4e-4684.75Ribosomal L18p/L5e family protein [Theobroma cacao][more]
gi|728822323|gb|KHG04764.1|9.0e-4683.3350S ribosomal L18 [Gossypium arboreum][more]
gi|702361554|ref|XP_010059974.1|2.0e-4585.09PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G011400.1CmaCh11G011400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 27..120
score: 5.0
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 24..120
score: 2.0
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 1..121
score: 8.8
NoneNo IPR availablePANTHERPTHR12899:SF10SUBFAMILY NOT NAMEDcoord: 1..121
score: 8.8
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 17..118
score: 1.11

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G011400CmoCh10G012000Cucurbita moschata (Rifu)cmacmoB101
CmaCh11G011400CmoCh11G011830Cucurbita moschata (Rifu)cmacmoB112
CmaCh11G011400Cp4.1LG18g00440Cucurbita pepo (Zucchini)cmacpeB134
CmaCh11G011400Cp4.1LG04g00500Cucurbita pepo (Zucchini)cmacpeB147
CmaCh11G011400Carg25025Silver-seed gourdcarcmaB0342
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh11G011400CmaCh10G011210Cucurbita maxima (Rimu)cmacmaB074
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G011400Cucumber (Gy14) v2cgybcmaB042
CmaCh11G011400Melon (DHL92) v3.6.1cmamedB130
CmaCh11G011400Cucumber (Chinese Long) v3cmacucB0114
CmaCh11G011400Watermelon (97103) v2cmawmbB110
CmaCh11G011400Wax gourdcmawgoB0173
CmaCh11G011400Cucumber (Gy14) v1cgycmaB0519
CmaCh11G011400Wild cucumber (PI 183967)cmacpiB100
CmaCh11G011400Cucumber (Chinese Long) v2cmacuB099
CmaCh11G011400Melon (DHL92) v3.5.1cmameB122
CmaCh11G011400Watermelon (Charleston Gray)cmawcgB107
CmaCh11G011400Watermelon (97103) v1cmawmB092
CmaCh11G011400Bottle gourd (USVL1VR-Ls)cmalsiB146