Carg25025 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25025
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L18
Location	Cucurbita_argyrosperma_scaffold_176 : 223914 .. 225710 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTAAACCCTTCGCTCTACCCTTCTCCTTCATTTCTTTCACAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGGTCTTCCCGGATCTAAACTCTTCTTTTTCCTTTCATCTTTTTTGTTTCGTCCATTCAACCAAACTCAACACTGGGTAAATTTGAAATTAGGTTCATGAAATGATTTCGAATCCTTTCGAACTGTGGGTTAGAATACTGTTAGTTTTAAGATGCATTTAATCTAATCTTAGTTTTTACTAATGGAATTCGTTGAAATCTGTTTTTCTTTTTTTTTTAGAATATTGTTGAATGTATTAGGAAAAAATTCGAATGTGCTATATTGAACTTGGATTCATGTTTATAAGGGTAGTGGCGAACAGATTTCGAACCCGTAGACAACCACTTTGCAGTGGCCCTATTCAGTAATTTTTCCCCAATTTTAGGTTTCAGTGTGACAATCGTCATCTTTGCCTCTTTGGATTTTCTCTTTCGGAGTTTTTCTCAAGACTTTAAAATTAGTCTTTAGGGGGAGGTTTTCACACTCTTATAAATGGTGTTTTATTCTCCTCCTCAATTAAGGACGGACATCACAATCCACCCCTTTCGGCCCGGCGTCCTCACTGGCACTCTTTCCTTCCTCCAATCGATGTGGGACCGCCCCAAATCCACCCTCTTCAGGGCCTAGCATCCTTACTGGCACACCGCCTCATGTCTACCCCTTTCGGGGAACAGCGAGAAAGCTGACACATCGTCCAGGGTCTGGCTCTAATACGATTTGTAACGACACAAATCCACTACTAGCAGATATTGTTCTCTTTGAGCTTTTGCTTTCGAGCTTCCCCACAAGACTCTAAAACGCGTCCATACTCTCCTCTCCAACCAACGTGGGACATCACATTCAGCCTTTGGAAATTGAACATTAGAAGGCCAGATTTCTTGAAACTGAACCAATAGATCCAATCCAACCAGTGTAGTTGAAATCTGGATTTGCCCAATCAAGTTCATTGGTTTGGTAATGGTTCTCCATTTTCACTGACCAATGATATGGTTTCATTATTGGTTTAGCGTTATGAATGGGTCCCATTTTAATTTTTGTGAAGAACAGATAGCATTTGTCTCTGCTTATTAGATAGTATATCAAAACCATTGCCCATTGCCATTATTATGAAAGCTATGTAAGGGATTTTAAACTTTAAAGCATGATATAAATGGTGGTTAACCATACTTATTATTGAACTCACTAGTTGGTAGCTTAGCTTAAGCTTGAGAAGATTGAAGATCCTAAGATTCATCTTTGTTTATGTCATTTAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTTGGCTGCAAGCTCGCAGGAGAAGGCGCTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCTGCTGCAAAGATCGGGAAATTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACACAAGTATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGAATTCACTGCTCAATATTATGTGAGTTTGATGATTAGTGAGAGTAGTGTTGTTAGGTGAAGGTGTCATACGAGCATTTTTGGGAAATAAACAATAAT

mRNA sequence

AACTTAAACCCTTCGCTCTACCCTTCTCCTTCATTTCTTTCACAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTTGGCTGCAAGCTCGCAGGAGAAGGCGCTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCTGCTGCAAAGATCGGGAAATTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACACAAGTATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGAATTCACTGCTCAATATTATGTGAGTTTGATGATTAGTGAGAGTAGTGTTGTTAGGTGAAGGTGTCATACGAGCATTTTTGGGAAATAAACAATAAT

Coding sequence (CDS)

AACTTAAACCCTTCGCTCTACCCTTCTCCTTCATTTCTTTCACAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTTGGCTGCAAGCTCGCAGGAGAAGGCGCTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCTGCTGCAAAGATCGGGAAATTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACACAAGTATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Protein sequence

NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL

Homology

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: XP_022970166.1 (uncharacterized protein LOC111469142 [Cucurbita maxima] >XP_022970175.1 uncharacterized protein LOC111469142 [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 104/116 (89.66%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+A AASSQEKALRPSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAA KIGK      LLKGIPAVCVHLKRE KYHGKIKAVIDSVREAGIKLL
Sbjct: 61  RDV--AAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 7.3e-44
Identity = 103/116 (88.79%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 107 RDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 2.1e-43
Identity = 102/116 (87.93%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEK LR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 107 RDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: XP_023530294.1 (uncharacterized protein LOC111792903 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43
Identity = 101/116 (87.07%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKAL+PSM+ST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALKPSMDST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAA KIGK      LLKGIPAVCVHLKRE KYHGKI+AV+DSVREAGIKLL
Sbjct: 61  RDV--AAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIEAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: XP_023515963.1 (uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43
Identity = 101/116 (87.07%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPY+LKMHFTNKYVSAQVIHS+TATVA AASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYILKMHFTNKYVSAQVIHSKTATVASAASSQEKALRSSMEST 60

Query: 107 RDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. TAIR10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-37
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAA+KIGK      L+K IPAV + +K+E +YHGK+KAVIDSVREAG+KLL
Sbjct: 61  RDV--AAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of Carg25025 vs. TAIR10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 47.8 bits (112), Expect = 7.3e-06
Identity = 40/149 (26.85%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 11  SFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMH 70
           S +S P+     ++ SFV AA +R+ +   + R             R   Y++P++L + 
Sbjct: 46  SVISSPIV----KKDSFVQAAWTRRSRGEAAKRPNR-----KSWKQRTDMYMRPFLLNVF 105

Query: 71  FTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGI 130
           F+ K++ A+V+H  T+ V   A++  + +R ++ S  D    A   IGKL+        +
Sbjct: 106 FSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVD--NEACRLIGKLIAERSMEADV 165

Query: 131 PAVCVHLKREHKYHGKIKAVIDSVREAGI 154
            AV    ++  +  GK+  VID+++E GI
Sbjct: 166 YAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of Carg25025 vs. Swiss-Prot
Match: sp|A8IAP8|RL18_AZOC5 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.3e-07
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL----- 126
           L +H T+K++ AQ+I        +AASS EK LR S+++  DV AA A  IGKL+     
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKA--IGKLVAERAT 88

Query: 127 -KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KG+ AV V  +  + YHG++KA+ +  RE G++
Sbjct: 89  AKGVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of Carg25025 vs. Swiss-Prot
Match: sp|P52863|RL18_VIBPR (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.1e-06
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------L 126
           L +H T ++V AQVI S  + V  AAS+ EKA+R  +++T +V AA A  +GK      L
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKA--VGKAIAERAL 85

Query: 127 LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KG+  V    +   +YHG++ A+ +S REAG+K
Sbjct: 86  EKGVETVAFD-RSGFQYHGRVAALAESAREAGLK 116

[Close]

BLAST of Carg25025 vs. Swiss-Prot
Match: sp|B6EPU1|RL18_ALISL (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.4e-06
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL----- 126
           L +H T ++  AQVI    + V  AAS+ EKA+R  + +T + AAA A  IGKL+     
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVA--IGKLIAERAI 85

Query: 127 -KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KGI  V    +   +YHG++ A+ DS REAG+K
Sbjct: 86  EKGITNVAFD-RSGFQYHGRVAALADSAREAGLK 116

[Close]

BLAST of Carg25025 vs. Swiss-Prot
Match: sp|B8EBI9|RL18_SHEB2 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) OX=407976 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.4e-06
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL----- 126
           L +H T +++ AQVI+ E A V  AAS+ EKA++  ++ST +V AA A  +GK +     
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKA--VGKFVAERAI 85

Query: 127 -KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KG+ +V    +   KYHG++ A+ D+ REAG+K
Sbjct: 86  EKGVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]

BLAST of Carg25025 vs. Swiss-Prot
Match: sp|A3DA56|RL18_SHEB5 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.4e-06
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL----- 126
           L +H T +++ AQVI+ E A V  AAS+ EKA++  ++ST +V AA A  +GK +     
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKA--VGKFVAERAI 85

Query: 127 -KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KG+ +V    +   KYHG++ A+ D+ REAG+K
Sbjct: 86  EKGVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]

BLAST of Carg25025 vs. TrEMBL
Match: tr|A0A1S3CHJ0|A0A1S3CHJ0_CUCME (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-42
Identity = 100/116 (86.21%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVA AASSQEKALR SMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGK      LLKGIPAVCVHLKRE KYHGK+KAVIDSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. TrEMBL
Match: tr|A0A0A0L0Z6|A0A0A0L0Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41
Identity = 98/116 (84.48%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VA AASSQEKAL+ SMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGK      LLKGIPAVCVHLKRE +YHGK+KAVIDSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. TrEMBL
Match: tr|A0A2I4H1J9|A0A2I4H1J9_9ROSI (uncharacterized protein LOC109012700 OS=Juglans regia OX=51240 GN=LOC109012700 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.6e-39
Identity = 92/116 (79.31%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPR+T YLKPYVLKMHFTNKYVS QVIH+ TAT+A +ASSQEKALRPSMEST
Sbjct: 1   MVIPPPVRPPRITNYLKPYVLKMHFTNKYVSTQVIHAPTATIASSASSQEKALRPSMEST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAA KIGK      LLK IPAV VHLKRE +YHGK+KAVIDS+REAG+KLL
Sbjct: 61  RDV--AAAGKIGKILGERLLLKDIPAVAVHLKREQRYHGKVKAVIDSLREAGVKLL 114

[Close]

BLAST of Carg25025 vs. TrEMBL
Match: tr|A0A061F2F1|A0A061F2F1_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao OX=3641 GN=TCM_026668 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.6e-39
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 42  SRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRP 101
           S++ EMVIPPPVRPPR+T++LKPYVLKMHFTNKYVSAQVIHS TATVA +ASSQEKALR 
Sbjct: 118 SKIFEMVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRA 177

Query: 102 SMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKL 157
           SMESTRDV  AAAAKIGK      LLK IPAV V LKRE KYHGK+KAVIDS++EAG+KL
Sbjct: 178 SMESTRDV--AAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKL 236

[Close]

BLAST of Carg25025 vs. TrEMBL
Match: tr|G7IE75|G7IE75_MEDTR (50S ribosomal L18-like protein OS=Medicago truncatula OX=3880 GN=11445003 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.1e-39
Identity = 93/116 (80.17%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIH+ TATVA +ASSQEKALR S+E+T
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETT 60

Query: 107 RDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGKL      LK IPAV VHLKRE +YHGK+KAVIDS+REAG++LL
Sbjct: 61  RDV--AAAAKIGKLLAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVRLL 114

The following BLAST results are available for this feature:

BLAST of Carg25025 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970166.1	1.9e-44	89.66	uncharacterized protein LOC111469142 [Cucurbita maxima] >XP_022970175.1 uncharac...	[more]
XP_022961444.1	7.3e-44	88.79	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_022968817.1	2.1e-43	87.93	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]
XP_023530294.1	2.8e-43	87.07	uncharacterized protein LOC111792903 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023515963.1	2.8e-43	87.07	uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25025 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27820.1	2.1e-37	72.41	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	7.3e-06	26.85	Ribosomal L18p/L5e family protein	[more]

BLAST of Carg25025 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A8IAP8\|RL18_AZOC5	6.3e-07	40.43	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
sp\|P52863\|RL18_VIBPR	4.1e-06	40.43	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
sp\|B6EPU1\|RL18_ALISL	5.4e-06	41.49	50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 G...	[more]
sp\|B8EBI9\|RL18_SHEB2	5.4e-06	40.43	50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) OX=407976 GN=rplR...	[more]
sp\|A3DA56\|RL18_SHEB5	5.4e-06	40.43	50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) O...	[more]

BLAST of Carg25025 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CHJ0\|A0A1S3CHJ0_CUCME	1.5e-42	86.21	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1	[more]
tr\|A0A0A0L0Z6\|A0A0A0L0Z6_CUCSA	1.0e-41	84.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1	[more]
tr\|A0A2I4H1J9\|A0A2I4H1J9_9ROSI	3.6e-39	79.31	uncharacterized protein LOC109012700 OS=Juglans regia OX=51240 GN=LOC109012700 P...	[more]
tr\|A0A061F2F1\|A0A061F2F1_THECC	3.6e-39	78.51	Ribosomal L18p/L5e family protein OS=Theobroma cacao OX=3641 GN=TCM_026668 PE=4 ...	[more]
tr\|G7IE75\|G7IE75_MEDTR	6.1e-39	80.17	50S ribosomal L18-like protein OS=Medicago truncatula OX=3880 GN=11445003 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25025-RA	Carg25025-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 66..155 e-value: 1.4E-12 score: 47.9
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 47..156
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 52..155 e-value: 1.2E-18 score: 69.6
None	No IPR available	PANTHER	PTHR12899:SF6	SUBFAMILY NOT NAMED	coord: 47..156
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 61..153 e-value: 1.03792E-17 score: 73.3431
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 54..153

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25025	CmaCh10G011210	Cucurbita maxima (Rimu)	carcmaB0341
Carg25025	CmaCh11G011400	Cucurbita maxima (Rimu)	carcmaB0342
Carg25025	CmoCh10G012000	Cucurbita moschata (Rifu)	carcmoB0345
Carg25025	CmoCh11G011830	Cucurbita moschata (Rifu)	carcmoB0346
Carg25025	Cp4.1LG18g00440	Cucurbita pepo (Zucchini)	carcpeB0346
Carg25025	Cp4.1LG04g00500	Cucurbita pepo (Zucchini)	carcpeB0347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25025	Cucumber (Gy14) v2	carcgybB0260
Carg25025	Cucumber (Gy14) v1	carcgyB0290
Carg25025	Wild cucumber (PI 183967)	carcpiB0277
Carg25025	Cucumber (Chinese Long) v2	carcuB0273
Carg25025	Cucumber (Chinese Long) v3	carcucB0276
Carg25025	Bottle gourd (USVL1VR-Ls)	carlsiB221
Carg25025	Melon (DHL92) v3.5.1	carmeB0249
Carg25025	Melon (DHL92) v3.6.1	carmedB0258
Carg25025	Watermelon (Charleston Gray)	carwcgB0239
Carg25025	Watermelon (97103) v1	carwmB0236
Carg25025	Watermelon (97103) v2	carwmbB0253
Carg25025	Wax gourd	carwgoB0314