CmaCh10G006350 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh10G006350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA-binding protein-related
LocationCma_Chr10 : 2907510 .. 2912627 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAACTAGAATTTAGGGTTTATGAATTTACATTCCATCTTTTTCAACGATAATCGGCGTTCACACTTCAGACCGACCCGTTCGTCCCTGCACATCGTATCAGGCAGAAGAGTTAGGAAAACAAGGCGAAAGGATGGGTTCCAGGGGTAAAGACTCTACGACACACCATCAGCCGTTATTGAGCAGTCTTGTTGTCCGGCCTTCAAATAGTGACGGGGGTGGTGGCGGAGTCTGTGGAACCAGTGGCGGCCGTGTTGGTCGTGGAAGCGATTATGAGGCGGGTGAGGTTCCCCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGATGATTTGGGTTCGTTATTATTCTACCGTACACCTTTGTTTTTGCTCGGTTTTCGAGCTATGATTGAATAAGTAGTTTCTGTGCTTAAATGTTTTTTTTTTTTCCTTCTAAAAAACTTGTCACCGTGTTGAAGTTAATTGCTTGGCGCCTTTAGTTAGGGTTTTTATGCATTATTTGGTGGAAAACTTATTTTCAATGACAGAAAGTAAATTACAATCCAATCCGTGTAAATGGAGATTATTAGATTGTTCATCGAGGCTAAAAGACGACTTAAAGCTTTAAAGGGAAAGTGATGTTTACTCCAAGATAATGTAGTCAGTCACTATTGCTTCAACAAAGCTATCCAAACCCTTACCTTTTGCAGTAGAGGTTCGCATGGTCCTTTCTAGCCTAAGTTTTCAATAAGGCGCTCCATTGATTCATAGCCACAGAATCACCTTCTCTTTTATGAAAGGATGGTCGCTGAGTCTTGATACCTTCAGAATTTATATGATATATCAATGTGCTTTCTCAGAAGTTGATGTAAAGATTACAGATGCATAAATGTGTATATAACCTGTAAATTTATGTCACTACATGTTTACAAGTTCCTTCCATTAGGTTCCTTGTCTCAAAATTATAGCCGTCCTTGTAAATTTTGTTTTAGCTAAATTCCAGTTTGCGAGTTCTGTCTCAATTGTGGGGGGATAATTTAGTTAACCGAAGTATGTTGTAGTTTCATGGGAGATGGAACCCTTAGATATGCTTCGAAAGAAAATAAAGAAAACCATCCTGGCTCTCTTTTCCTGGATGGATAATTGAAGAAATCTTAATAGTGTTACTCCTTAGGTTCCATGCACTCTATACTCTTGTTGGTCTTTTCTCATATTTTTAGTTAGACCTTATCAAAGAGCTTTGCCAAGATAATTGCAGTTTGACTCATCTGTATTATTATTATTCTCCCTGGTCCTTCTTGCTGCCTTACCACAGAGAACGGATATGAATGCCTGCATTTATAGACAAATATCCATCTGCCGTTGGTAAGAGAGGATGATTTTTTTTATGTCTTTCACCTAGAGGAATGCTATCTAAGATTTTTACTCAAAATGGTGGATTATTGGAATTAATGGGTTTCACCATTGATTCTGACCAATTTATGACGGCGTTTGGTGAGTTCAATAATCATGCATTATGTCTACCCTGCCATTAGAGACACAGTCGAGTGCCAATTCCACAGGAGGCCAGATTTTCATTTTCTTTTTTTGAAACTTGTTGGAGAGGATGTATTGGTTATTTGCAGAAGATATTTGAGTATTTTTCCTAGATCTCTAGCAAACTTTTTTATAAGCTTATATTCTCATCTTGTGCAAACTTAGTTTAATTTATTAGAAAATATCAAATTGTGTATGACGTTTTCTTTTGATTCATCAAATACTAGGATAGGATGCATTGATAACTAGGGTTTTGCAAATCCGTTTTTGGTTATCACTTTGATCTTATAGAAATGTTATGATGTTCCGGTAACAAATGAATTCCGTGGTCTCTTTGTTTCTTTTATTTTATCCCCATTTTCTTTTGCATGTCGAGAATGTCAATCTTCTTCCGCATGTCAAACTTTTTTTCTGGGAATAAAATTTTCTATTCTCTTACAGCTTTGTGTTGCCGCCTGCAAGAACTTAGATCTTGAGGAGGGCTTTGGGTAAGTGCAGGCTCAGTTCACGATCCTGGGAATTGCTCTTTTTTCCATGTTAAGACAATTTAATTTTGGGGTTAAAATTTGTGCAAGAAATTCTGGGTTGCTGAGTGGAGAGCTATCAATTCAACCGTTGTCATTTTGGGGAATTTATGGTATTGGGCTTGGTTGGAGTAAGATATGTTTGAATACTGATGATAATCAAATCATGGTGAGGTGAGGGTTTTCTCTTGAGAAATTGAAGGCGATCAAATAACAAGCTAAAGAAGTGTTGTTGGCCTGCCTGGTTGAGACTATTGGTATGAGCTCTAAATGAACTTAATGGTGCTTGACTTTGGCTCTCTCAACTTAAAGGTGGACTTTTTCACTGTCTATATTTCCATCCAAGGGGTGAGGATATTCTCATGGAACAGACATTGATTGGGTTGTATTGGTTGATTAAGGGCCATCTGGGTTATGTGTAGCAATTCTTGATCTATTTTTCAGATTCATTAAGGGTTGATTTGCAGGAAAACTTGGGATCTTCATATTTCATTTTGTACCTCATCCTACAATTAGGGCTTTGTTTCAATTAAGTATTTGGTAGTGTGAATTGGTATAGCAATGGCAGCCCAGTGGCCTACAATTGAATTAACTGCCTTCCTCTCCTCCTTTCAACTCTTACAAATCATGGTCAATGATTGAAGGTATCATTGGTCATTTCAACAGGATGTGGCTAGCCAACTAGACTCTACGGAAAATTGTTCTTGCAGTATGCATGGAAATCCATCGGTATGATTTGAAAAGCAGTAACGAACTTTTGTGACCATGCAAATAAGATTTGGAGTTGACTTCTTAAATAACAGAGGAGTAGGGTGGGTGCCATTGCTCAATCTGGATTTTGGATACTTTAATTTATGCGGGTTTTTTTATGACAGTTTGTTTCCTGAGCTTTTTGCTTTGGTCTTACTGATCCTCCCAGGTGTCATTCAACTGAAGAATTTTGTGTATTGGCATGGGTTGATTGTTCCTTTGTGATTGACTCTAGCTTGTATGTGTTGTTCATTTAAGATTGGGCTATTGGTGGACATCCTTTCTCATTGCCAGGACTTCGGTGCACTGAGTTTTTGCTTCTTCAAGACATGGTTTTGGGCGCATTGCTGGGTTTGTGGAAAATTGGAAATAGAATCTTTCTAGGCTATGGTGGTTCAAATTATAGATGGATGTGGGTTTTACATGTACTAACGCTGGACATGTGTTCATTGCAAGTAGCCATGGTTTTTCTATCTTATTTGCTTCTGTTAAAATTTCTCATGATGTGGGTGGTAACATATGGAACCTGCACGGGCAGTTAACATCAGAACTTTCTCTCTTCTCTGCATCTTTGCACATTCTTTTGCTCTGTTCTTAGAGAGGAGATGCCAACATTGAATGGCAATGGTTGTCAATTTCTTTGGGTTGGTCCTTTTGCAGTTGTATCAGAGAAAATCTTTGGAGATATATGGTTGTTGTACTTCGAGTAGTTTTCCTATGCAACCTGTTACTTTTCTTATATCTTATGAACCCACTCCCTTTTTTATTTCAGGATATAGAATGCATGCAGGTTCAGTTTCTCCCACACGTCGTCGGGATGATCATAGATATATTTCTGATTTTGATCATTCTAGTGGTCTCACACGGGGCCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGGTATCGAGATACTTCGCCTCATTACAGTCGAAGAGTAAGTGGTGGCAGGCCATTTGGGAGAGGTTTTGATGGCCCTGGACATGCTCCTGGGCCATTTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTGTAAGTACTAATCTAGCACCACAATTTGATGTATATATATAGCAATGGGATTTACTTCTGTTTTGTACAGATAAACCTTAGCTGATAACCATGCCATTACACCTTTTAGATATATTAATTAGAATTTTAACCGTTGCATGGAATAGGATCCTTTCTATTAATGTATTTTGGTTGGTTTAGTTTATTTTGTTATTATTTTTTAAACGTAACTCTGAGGTTGTTTTTCCTATAAGAATTCTGTCATGCATATTACTTTTATGGATTAAAAAAGAGAGCATATTTCTTTAACGGGTTTGGCTGTAGTGGTTGTATCGAATGAAACATGATTCATCAGAGAAGCTCGAATGTGTGTGCCAATCTTTTATGTGAAAGAATGATTTTGATGATCCGGTTTCTTCACCATTTCGCATGTTGTACTATACTCTAACGGAGATTTTATTTTATTTTAATGCATAGTTTACTGTACGTTCTTTCATTACATTGCTTCATGGTGCTATTCTTTTCTCAAACCAGTTGATTCTTATTCTTCATTAGATGTGACAACTTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAACAGACCCCGAACTGGAGCTGGTGGAAGTCCTCGAAGAGGAGGCTATGTTGGCCCACCATCCCTGCATTCTCCTCCTAGACGCTTTGCTGCCCACCCTATTGAACGTTCTCCTGGCAGGACTCTTAATGAATATAGGTCACCTCCCCGTGGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGTCTGGCACCTCCGAGGTATGAAAGCAGGTATTCCGATCATCACCTGCGGAGAGATAGGGTTGATTATGTAGAAGACAGCTTCAGAGGAAGATCCAAGTTTGATAGGCTACCTCCTTCAGATTGGTCCCTTAGAGACAATGGAAGGGATGACTTCATCAACGAGAGGAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCACCACAACTGTCGTTGCTTCCTCAGCGGGGGCGATGGGCACGCGACGTGAGAGAAAGGAGCCGTTCCCCAATCAGAGGTCCAGTCAGATCACCATTGAGAGTCCCTCTTCGGTCTCCATTAAGTGGTGGCCTTCCACCAAAAGACTATCGTAGAGATGTTTATGTTGAAAGGGAGCGTGACGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGGTCCATTTTAG

mRNA sequence

CATAACTAGAATTTAGGGTTTATGAATTTACATTCCATCTTTTTCAACGATAATCGGCGTTCACACTTCAGACCGACCCGTTCGTCCCTGCACATCGTATCAGGCAGAAGAGTTAGGAAAACAAGGCGAAAGGATGGGTTCCAGGGGTAAAGACTCTACGACACACCATCAGCCGTTATTGAGCAGTCTTGTTGTCCGGCCTTCAAATAGTGACGGGGGTGGTGGCGGAGTCTGTGGAACCAGTGGCGGCCGTGTTGGTCGTGGAAGCGATTATGAGGCGGGTGAGGTTCCCCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGATGATTTGGATTGGGCTATTGGTGGACATCCTTTCTCATTGCCAGGACTTCGGTGCACTGAGTTTTTGCTTCTTCAAGACATGGTTTTGGGCGCATTGCTGGGATATAGAATGCATGCAGGTTCAGTTTCTCCCACACGTCGTCGGGATGATCATAGATATATTTCTGATTTTGATCATTCTAGTGGTCTCACACGGGGCCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGGTATCGAGATACTTCGCCTCATTACAGTCGAAGAGTAAGTGGTGGCAGGCCATTTGGGAGAGGTTTTGATGGCCCTGGACATGCTCCTGGGCCATTTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACTTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAACAGACCCCGAACTGGAGCTGGTGGAAGTCCTCGAAGAGGAGGCTATGTTGGCCCACCATCCCTGCATTCTCCTCCTAGACGCTTTGCTGCCCACCCTATTGAACGTTCTCCTGGCAGGACTCTTAATGAATATAGGTCACCTCCCCGTGGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGTCTGGCACCTCCGAGGTATGAAAGCAGGTATTCCGATCATCACCTGCGGAGAGATAGGGTTGATTATGTAGAAGACAGCTTCAGAGGAAGATCCAAGTTTGATAGGCTACCTCCTTCAGATTGGTCCCTTAGAGACAATGGAAGGGATGACTTCATCAACGAGAGGAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCACCACAACTGTCGTTGCTTCCTCAGCGGGGGCGATGGGCACGCGACGTGAGAGAAAGGAGCCGTTCCCCAATCAGAGGTCCAGTCAGATCACCATTGAGAGTCCCTCTTCGGTCTCCATTAAGTGGTGGCCTTCCACCAAAAGACTATCGTAGAGATGTTTATGTTGAAAGGGAGCGTGACGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGGTCCATTTTAG

Coding sequence (CDS)

ATGGGTTCCAGGGGTAAAGACTCTACGACACACCATCAGCCGTTATTGAGCAGTCTTGTTGTCCGGCCTTCAAATAGTGACGGGGGTGGTGGCGGAGTCTGTGGAACCAGTGGCGGCCGTGTTGGTCGTGGAAGCGATTATGAGGCGGGTGAGGTTCCCCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGATGATTTGGATTGGGCTATTGGTGGACATCCTTTCTCATTGCCAGGACTTCGGTGCACTGAGTTTTTGCTTCTTCAAGACATGGTTTTGGGCGCATTGCTGGGATATAGAATGCATGCAGGTTCAGTTTCTCCCACACGTCGTCGGGATGATCATAGATATATTTCTGATTTTGATCATTCTAGTGGTCTCACACGGGGCCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGGTATCGAGATACTTCGCCTCATTACAGTCGAAGAGTAAGTGGTGGCAGGCCATTTGGGAGAGGTTTTGATGGCCCTGGACATGCTCCTGGGCCATTTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACTTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAACAGACCCCGAACTGGAGCTGGTGGAAGTCCTCGAAGAGGAGGCTATGTTGGCCCACCATCCCTGCATTCTCCTCCTAGACGCTTTGCTGCCCACCCTATTGAACGTTCTCCTGGCAGGACTCTTAATGAATATAGGTCACCTCCCCGTGGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGTCTGGCACCTCCGAGGTATGAAAGCAGGTATTCCGATCATCACCTGCGGAGAGATAGGGTTGATTATGTAGAAGACAGCTTCAGAGGAAGATCCAAGTTTGATAGGCTACCTCCTTCAGATTGGTCCCTTAGAGACAATGGAAGGGATGACTTCATCAACGAGAGGAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCACCACAACTGTCGTTGCTTCCTCAGCGGGGGCGATGGGCACGCGACGTGAGAGAAAGGAGCCGTTCCCCAATCAGAGGTCCAGTCAGATCACCATTGAGAGTCCCTCTTCGGTCTCCATTAAGTGGTGGCCTTCCACCAAAAGACTATCGTAGAGATGTTTATGTTGAAAGGGAGCGTGACGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGGTCCATTTTAG

Protein sequence

MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQYSRLDRYSDDLDWAIGGHPFSLPGLRCTEFLLLQDMVLGALLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDRVDYVEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKGFERRPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVYVERERDDRRGLGRDRDGGPF
Homology
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BLAST of CmaCh10G006350 vs. Swiss-Prot
Match: RBP56_HUMAN (TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.8e-07
Identity = 37/105 (35.24%), Postives = 45/105 (42.86%), Query Frame = 1 

Query: 133 GREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDG 192
           G+EF G      +    P + R        G G  G     G +RG          P+ G
Sbjct: 305 GKEFHGNIIKVSFATRRPEFMR--------GGGSGGGRRGRGGYRGRGGFQGRGGDPKSG 364

Query: 193 DWYCSDPLCDNLNFARREFCNNCNRPR----TGAGGSPRRGGYVG 234
           DW C +P C N+NFARR  CN CN PR      +GG  R  GY G
Sbjct: 365 DWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGG 401

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BLAST of CmaCh10G006350 vs. Swiss-Prot
Match: FUS_BOVIN (RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-06
Identity = 54/176 (30.68%), Postives = 72/176 (40.91%), Query Frame = 1 

Query: 133 GREFGGGRDLGRYRDTSPHYSRRVSGGR-------PFGRGFDGPGHAPGPFRG--ERSKN 192
           G+EF G      +      ++R    GR       P GRG  G G + G  RG       
Sbjct: 343 GKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGG 402

Query: 193 NPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR-TGAGGSPRRGGYVGPPSLHSPPR 252
               + R GDW C +P C+N+NF+ R  CN C  P+  G GG P  G ++G    +   R
Sbjct: 403 GGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGP-GGSHMG--GNYGDDR 462

Query: 253 RFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDR 299
           R      +R   R     R   RG    G R    GG  P + +SR      RR+R
Sbjct: 463 RGGRGGYDRGGYRGRGGDRGGFRGGRGGGDR----GGFGPGKMDSRGEHRQDRRER 511

[Close]
BLAST of CmaCh10G006350 vs. Swiss-Prot
Match: FUS_HUMAN (RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-06
Identity = 54/176 (30.68%), Postives = 72/176 (40.91%), Query Frame = 1 

Query: 133 GREFGGGRDLGRYRDTSPHYSRRVSGGR-------PFGRGFDGPGHAPGPFRG--ERSKN 192
           G+EF G      +      ++R    GR       P GRG  G G + G  RG       
Sbjct: 356 GKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGG 415

Query: 193 NPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPR-TGAGGSPRRGGYVGPPSLHSPPR 252
               + R GDW C +P C+N+NF+ R  CN C  P+  G GG P  G ++G    +   R
Sbjct: 416 GGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGP-GGSHMG--GNYGDDR 475

Query: 253 RFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDR 299
           R      +R   R     R   RG    G R    GG  P + +SR      RR+R
Sbjct: 476 RGGRGGYDRGGYRGRGGDRGGFRGGRGGGDR----GGFGPGKMDSRGEHRQDRRER 524

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BLAST of CmaCh10G006350 vs. TrEMBL
Match: A0A0A0M3K7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696450 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 1.2e-160
Identity = 285/352 (80.97%), Postives = 301/352 (85.51%), Query Frame = 1 

Query: 88  FLLLQDMVLGALLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRD 147
           FL+  +     + GYR+HAGSVSP RRRD HRY+S+FDHS GLTRGREFGGGRDL RYRD
Sbjct: 13  FLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRD 72

Query: 148 TSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFA 207
           TSPHY RRVSGGRPFGRG DGP  APGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFA
Sbjct: 73  TSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFA 132

Query: 208 RREFCNNCNRPRTGAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRGW 267
           RREFCNNCNRPRTG GGSPRR GY GPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPR W
Sbjct: 133 RREFCNNCNRPRTGGGGSPRR-GYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSW 192

Query: 268 ARDGPREIAAGGLAPPRYESRYSDHHLRRDRVDYVEDSFRGRSKFDR-LPPSDWSLRDNG 327
           ARDG RE+AAGGLAPPRYESRYSD HLRRDRVDY+EDSFRGRSKFDR LP +DW+LRDNG
Sbjct: 193 ARDGSREMAAGGLAPPRYESRYSD-HLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNG 252

Query: 328 RDDFINERKGFERRPLSPKGFERRPLSPKGFERRPLSPPQLSLLPQRGRWARDVRERSRS 387
           RDDFI ERKGFERRP S                     P L LLPQRGRW+RDVR+RSRS
Sbjct: 253 RDDFITERKGFERRPPS---------------------PPLPLLPQRGRWSRDVRDRSRS 312

Query: 388 PIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVYVERERDDRRGLGRDRDGGPF 439
           PIRGP+RSPLRVPLRSPLS GLPPKD+RRDV+ ERERDDRRGLGRDR+GGPF
Sbjct: 313 PIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 341

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BLAST of CmaCh10G006350 vs. TrEMBL
Match: W9S109_9ROSA (TATA-binding protein-associated factor 2N OS=Morus notabilis GN=L484_001933 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 4.6e-131
Identity = 261/440 (59.32%), Postives = 285/440 (64.77%), Query Frame = 1 

Query: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQYS 60
           M SRGKD TT HQPLLSSLVVRPS SDGGGGG     GG  GR SDYEAGEV R+PP YS
Sbjct: 1   MTSRGKDQTTPHQPLLSSLVVRPSTSDGGGGG----GGG--GRASDYEAGEVRREPPSYS 60

Query: 61  RLDRYSDDLDWAIGGHPFSLPGLRCTEFLLLQDMVLGALLGYRMHAGSVSPTRRRD-DHR 120
           R DRYS D                                GYR+ AGS SP RRRD DHR
Sbjct: 61  RSDRYSGDS-------------------------------GYRLRAGSTSPVRRRDSDHR 120

Query: 121 YISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGE 180
           Y SDFDH   L R RE G  RD GR+RD SP Y+R    GRPFGRG DGP   PG FRGE
Sbjct: 121 YNSDFDHLRSLARSREVGAARDAGRFRDYSPPYARGRGSGRPFGRGPDGPDFGPGLFRGE 180

Query: 181 -RSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSLH 240
             S+NNPNVRPR+GDWYC DPLC NLNFARR+ CNNC R R G  GSPRRG Y GPP   
Sbjct: 181 GMSRNNPNVRPREGDWYCPDPLCGNLNFARRDSCNNCKRSRYGPVGSPRRG-YPGPPLPD 240

Query: 241 SPPRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDR 300
            PPRRF   P++ SPGRT+N YRSPPR W RDGP+E  AGGL PPR++ RY DHH+RRDR
Sbjct: 241 VPPRRFPGPPLDHSPGRTMNGYRSPPRPWVRDGPKEFGAGGLPPPRHDGRYPDHHMRRDR 300

Query: 301 VDYVEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKGFE 360
           +DY +D +RGR+KFDR  P DW  RD GR+ FIN+RK FERRP S               
Sbjct: 301 LDYPDDHYRGRAKFDRPMPLDWGHRDRGRESFINDRKPFERRPPS--------------- 360

Query: 361 RRPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVY 420
             PL PP + L P RGRWARDVRERSRSP+R                 G PPKDYRRDVY
Sbjct: 361 --PLPPPPVPLPPNRGRWARDVRERSRSPLR----------------RGPPPKDYRRDVY 369

Query: 421 VERERDDRRGLGRDRDGGPF 439
           VER RDDRRG+GRDR GG +
Sbjct: 421 VERGRDDRRGMGRDRIGGTY 369

[Close]
BLAST of CmaCh10G006350 vs. TrEMBL
Match: A0A061GLL6_THECC (RNA-binding protein-related OS=Theobroma cacao GN=TCM_037850 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 4.0e-127
Identity = 252/442 (57.01%), Postives = 293/442 (66.29%), Query Frame = 1 

Query: 1   MGSRGKDST-THHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQY 60
           MGSR KD   +HHQPLLSSLVVRPS SDG  GG  G  GG  G GSDYE GEV R+PP Y
Sbjct: 1   MGSRDKDQKLSHHQPLLSSLVVRPSASDGADGG--GGGGGGRGGGSDYEPGEVRREPPPY 60

Query: 61  SRLDRYSDDLDWAIGGHPFSLPGLRCTEFLLLQDMVLGALLGYRMHAGSVSPTRRRD-DH 120
           SR DRY+D+                                GYR+ AGS SP RRRD DH
Sbjct: 61  SRSDRYNDEP-------------------------------GYRIRAGSSSPVRRRDADH 120

Query: 121 RYISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRG 180
           RY S+FD S G +R R+FG GRD GRYRD+SP Y+R   GGRP GRGFDGPG+ PGPFRG
Sbjct: 121 RYGSNFDRSGGPSRSRDFGNGRDPGRYRDSSPPYNRGPGGGRPLGRGFDGPGYGPGPFRG 180

Query: 181 E-RSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSL 240
           E  ++NNPNVRPR+GDW C DPLC NLNFARRE+CNNC R R    GSP RGGY GPP  
Sbjct: 181 EGMTRNNPNVRPREGDWVCPDPLCRNLNFARREYCNNCRRFRYAPVGSP-RGGYPGPPPS 240

Query: 241 HSPPRRFAAHPIERS-PGRTLNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRR 300
           H+PPRRF   P++ S PGR +N +RSPPRGWAR+GPRE  AGG  PPR+E R+SDH +RR
Sbjct: 241 HAPPRRFPGSPMDLSPPGRNMNGFRSPPRGWAREGPREFGAGGPPPPRHEGRFSDHSMRR 300

Query: 301 DRVDYVEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKG 360
           DR+D+++D +RGR++FDR  P DW  RD GR++F NERKG+ERRP SP            
Sbjct: 301 DRLDFLDDDYRGRNRFDRPMPMDWGHRDRGRENFFNERKGYERRPPSP------------ 360

Query: 361 FERRPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRD 420
               P  PPQ   LP RGRW RDVRERSRSP+R                G  PPK+YRRD
Sbjct: 361 ----PPPPPQ---LPPRGRWPRDVRERSRSPVR----------------GAPPPKEYRRD 373

Query: 421 VYVERERDDRRGLGRDRDGGPF 439
           +Y+ER R+DRRG+GRDR G  +
Sbjct: 421 MYLERGREDRRGVGRDRMGDAY 373

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BLAST of CmaCh10G006350 vs. TrEMBL
Match: M5VPV5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007541mg PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 2.1e-123
Identity = 252/441 (57.14%), Postives = 279/441 (63.27%), Query Frame = 1 

Query: 1   MGSRGKDSTT-HHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQY 60
           MGSR KD TT HHQPLLSSLVVRPS SDGGG G         GRGSDYE GEV R+PPQY
Sbjct: 1   MGSRDKDQTTSHHQPLLSSLVVRPSTSDGGGDGA--------GRGSDYELGEVRREPPQY 60

Query: 61  SRLDRYSDDLDWAIGGHPFSLPGLRCTEFLLLQDMVLGALLGYRMHAGSVSPTRRRD-DH 120
           +R DRY+DD                                GYRM AGS SP  RRD DH
Sbjct: 61  TRSDRYNDDP-------------------------------GYRMRAGSASPVHRRDADH 120

Query: 121 RYISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRG 180
           RY S++DHSSG  RGREFG  RD GRYRD SPHY+R    GRPF RG DGPG  PGPFRG
Sbjct: 121 RYSSEYDHSSGPLRGREFGNARDSGRYRDNSPHYARGRGAGRPFSRGLDGPGPGPGPFRG 180

Query: 181 ERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSLH 240
           E S+NNPNVR R GDW C DPLC NLNFARRE+CNNCN+ R G GGSPRR GY GPP   
Sbjct: 181 EGSRNNPNVRQRLGDWICPDPLCGNLNFARREYCNNCNKFRYGPGGSPRR-GYPGPPPPG 240

Query: 241 SPPRRFAAHPIERSPGRTLN-EYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRD 300
            PPRRF   P++   GR+LN  YRSPPRGWARDGPR+  A G+ PPR+E R+ DH +RRD
Sbjct: 241 GPPRRFPGPPVDPPLGRSLNGGYRSPPRGWARDGPRDFGA-GMPPPRHEGRFPDHQMRRD 300

Query: 301 RVDYVEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKGF 360
           R+DY  D+ RGR+KFDR  P DW  RD GRD F NERK FERR  SP             
Sbjct: 301 RLDY-SDNHRGRTKFDRPMPMDWGNRDRGRDSFFNERKAFERRLPSP------------- 360

Query: 361 ERRPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDV 420
              P  PP  +    RGRWA DVRERSRSP+R                GG PPKDY R +
Sbjct: 361 ---PSPPPPAA---HRGRWAHDVRERSRSPLR----------------GGPPPKDYNRPM 364

Query: 421 YVERERDDRRGLGRDRDGGPF 439
           Y++R RDDRRG+GR R G  +
Sbjct: 421 YIDRGRDDRRGMGRGRIGDAY 364

[Close]
BLAST of CmaCh10G006350 vs. TrEMBL
Match: F6HH13_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03670 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 1.2e-118
Identity = 243/458 (53.06%), Postives = 280/458 (61.14%), Query Frame = 1 

Query: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQYS 60
           MGSR KD T  HQPLLSSLV+RPS+S GGG G           GSDYE GE+ R+ P YS
Sbjct: 1   MGSRDKDQTAPHQPLLSSLVIRPSDSSGGGTG-----------GSDYEPGELRREAPHYS 60

Query: 61  RLDRYSDDLDWAIGGHPFSLPGLRCTEFLLLQDMVLGALL------------------GY 120
           R DR+ D     + G         C    +L +++ G +                   GY
Sbjct: 61  RSDRFGDGPGKRVCGK------CSCEISYMLCELIGGCITKNKRMPLALLVTMETPNDGY 120

Query: 121 RMHAGSVSPTRRRD-DHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRP 180
           R+ AGS SP RRR+ DHRY S+FDHS GL R R FG  RD GRYR+ SP Y R   GGR 
Sbjct: 121 RIRAGSSSPVRRRNPDHRYNSEFDHSGGLPRSRGFGSERDPGRYRNHSPPYGRGRGGGRS 180

Query: 181 FGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTG 240
           FGRG DGPG  PGP R E  +NNPNVRPR+GDW C DPLC NLNFARRE CNNCNR R G
Sbjct: 181 FGRGLDGPGFGPGPIRSEGIRNNPNVRPREGDWVCPDPLCGNLNFARREQCNNCNRYREG 240

Query: 241 AGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGLA 300
            G SPRR G+ GPP  H PPRRF+  P++RSPGRT+N YRSPPRGWARDGPRE   G  +
Sbjct: 241 PGESPRR-GFPGPPPPHPPPRRFSGPPMDRSPGRTMNGYRSPPRGWARDGPREFGGGAPS 300

Query: 301 PPRYESRYSDHHLRRDRVDYVEDSFRGRSKFDRLPPSDWSLRDNGRDDFI-NERKGFERR 360
             R++ R+ DH++RRDR+DY ED +R R+KFDR  P DW  RD GRD F  NERKG+ERR
Sbjct: 301 HRRHDGRFPDHNMRRDRLDYPEDDYRERNKFDRPAPPDWGHRDRGRDSFFNNERKGYERR 360

Query: 361 PLSPKGFERRPLSPKGFERRPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPL 420
           P SP                   PP    LP RGRW RDVR RSRSP+R           
Sbjct: 361 PPSP------------------PPPP---LPPRGRWGRDVRARSRSPVR----------- 403

Query: 421 RSPLSGGLPPKDYRRDVYVERERDDRRGLGRDRDGGPF 439
                GG P KDYRRD+Y+ R RDDR G+ RDR G P+
Sbjct: 421 -----GGPPLKDYRRDMYMGRGRDDRHGIRRDRFGEPY 403

[Close]
BLAST of CmaCh10G006350 vs. TAIR10
Match: AT4G28990.2 (AT4G28990.2 RNA-binding protein-related)

HSP 1 Score: 215.7 bits (548), Expect = 5.7e-56
Identity = 184/465 (39.57%), Postives = 224/465 (48.17%), Query Frame = 1 

Query: 1   MGSRGKDSTT-HHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQY 60
           MGS  K+ TT HH P +SSLVVRPS S+           GR   G DYE GEV RD P +
Sbjct: 1   MGSTEKEQTTQHHPPHISSLVVRPSGSND-------REDGRNAAG-DYEPGEVSRDRPSF 60

Query: 61  SRLDRYSDDLDWAIGGHPFSLPGLRCTEFLL----------------LQDMVLGAL--LG 120
           +R DRY  D       H F    +    ++L                LQ  ++ AL  LG
Sbjct: 61  NRSDRYKGDNGELSRHHLFLSLQMLVIVYVLVNVFDNALITITMLCKLQMSIVLALKYLG 120

Query: 121 YRMHAGSVSPTRRR-DDHRYISDFDHSSGLTRGREFGGGRDL-GRYRDTSPHYSRRVSGG 180
           +R  A S SP RR  +DH++ SD +HS    RGRE    R+  GR+RD SP  +R  +G 
Sbjct: 121 HRTRASSSSPGRRGYEDHKHGSDLNHSGVPPRGRELSSRREAPGRHRDYSPPLARGGAGA 180

Query: 181 RPFGRGFDGPGHAPGPFRGERSKNN-PNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRP 240
           RP+ RG DGP    G  R   S+NN   V+PR+GDWYC DPLC NLNFARRE C  C R 
Sbjct: 181 RPYRRGLDGPEPPHG--RDGMSRNNISKVQPREGDWYCLDPLCRNLNFARRESCYKCKRH 240

Query: 241 RTGAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAG 300
           R     SP     + PP  HSP R F             N YRSPPRGW RD P      
Sbjct: 241 RYAPANSPPLPRLLPPPMNHSPRRDF-------------NGYRSPPRGWPRDYP------ 300

Query: 301 GLAPPRYES-RYSDHHLRRDRVDYVEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGF 360
              PPR++   + D    RDR  Y +  +    +      SDW+                
Sbjct: 301 ---PPRHDHPTWRDRE--RDRPHYSDHEYPPSRRI----ASDWA---------------- 360

Query: 361 ERRPLSPKGFERRPLSPKGFERRPLSPPQLSLLPQRGRWARDVRERSRS-PIRGPVRSPL 420
              PL    ++RRP         PLSP      P+ GRW R +RERSRS P+R     PL
Sbjct: 361 HTEPLPKPHYDRRP---------PLSP------PRGGRWGRVLRERSRSPPLRDVPPPPL 395

Query: 421 RVPLRSPLSGGLPP--KDYRRDVYVERE-RDDRRGLGRDRDGGPF 439
           R      L GG PP  +DYRRD + +RE RDD RG GR R G  +
Sbjct: 421 RDGPPPSLRGGGPPLHRDYRRDSHFDRERRDDGRG-GRGRMGNSY 395

[Close]
BLAST of CmaCh10G006350 vs. NCBI nr
Match: gi|449449527|ref|XP_004142516.1| (PREDICTED: uncharacterized protein LOC101209122 isoform X1 [Cucumis sativus])

HSP 1 Score: 687.6 bits (1773), Expect = 1.4e-194
Identity = 349/439 (79.50%), Postives = 363/439 (82.69%), Query Frame = 1 

Query: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQYS 60
           MGSR KDSTTHHQPLLSSLVVRPSNSDGGGGGV GTSGGRVGRG+DYEAGEVPRDPPQYS
Sbjct: 1   MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGTDYEAGEVPRDPPQYS 60

Query: 61  RLDRYSDDLDWAIGGHPFSLPGLRCTEFLLLQDMVLGALLGYRMHAGSVSPTRRRDDHRY 120
           RLDRYSDDL                               GYR+HAGSVSP RRRD HRY
Sbjct: 61  RLDRYSDDL-------------------------------GYRIHAGSVSPPRRRDVHRY 120

Query: 121 ISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGER 180
           +S+FDHS GLTRGREFGGGRDL RYRDTSPHY RRVSGGRPFGRG DGP  APGPFRGER
Sbjct: 121 VSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGER 180

Query: 181 SKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSLHSP 240
           SKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTG GGSPRRG Y GPPSLHSP
Sbjct: 181 SKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGGGGSPRRG-YAGPPSLHSP 240

Query: 241 PRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDRVD 300
           PRRFAAHPIERSPGRTLNEYRSPPR WARDG RE+AAGGLAPPRYESRYSDH LRRDRVD
Sbjct: 241 PRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSDH-LRRDRVD 300

Query: 301 YVEDSFRGRSKFDR-LPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKGFER 360
           Y+EDSFRGRSKFDR LP +DW+LRDNGRDDFI ERKGFERRP SP               
Sbjct: 301 YLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRPPSPP-------------- 360

Query: 361 RPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVYV 420
                  L LLPQRGRW+RDVR+RSRSPIRGP+RSPLRVPLRSPLS GLPPKD+RRDV+ 
Sbjct: 361 -------LPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFG 385

Query: 421 ERERDDRRGLGRDRDGGPF 439
           ERERDDRRGLGRDR+GGPF
Sbjct: 421 ERERDDRRGLGRDREGGPF 385

[Close]
BLAST of CmaCh10G006350 vs. NCBI nr
Match: gi|659125534|ref|XP_008462733.1| (PREDICTED: uncharacterized protein LOC103501026 isoform X1 [Cucumis melo])

HSP 1 Score: 681.0 bits (1756), Expect = 1.4e-192
Identity = 347/439 (79.04%), Postives = 360/439 (82.00%), Query Frame = 1 

Query: 1   MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQYS 60
           MGSR KDSTTHHQPLLSSLVVRPSNSDGGGGGV GTSGGRVGRGSDYEAGEVPRDPPQYS
Sbjct: 1   MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGEVPRDPPQYS 60

Query: 61  RLDRYSDDLDWAIGGHPFSLPGLRCTEFLLLQDMVLGALLGYRMHAGSVSPTRRRDDHRY 120
           RL RYSDD                               LGYR+HAGSVSP RRRD HRY
Sbjct: 61  RLGRYSDD-------------------------------LGYRIHAGSVSPARRRDVHRY 120

Query: 121 ISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGER 180
           IS+F+HS GL RGREFGGGRDL RYRDTSPHY RRV GGRPFGRG DGP  APGPFRGER
Sbjct: 121 ISNFNHSDGLARGREFGGGRDLDRYRDTSPHYGRRVGGGRPFGRGVDGPRLAPGPFRGER 180

Query: 181 SKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSLHSP 240
           SKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTG GGSPRR GY GPPSLH+P
Sbjct: 181 SKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGGGGSPRR-GYAGPPSLHTP 240

Query: 241 PRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDRVD 300
           PRRFAAHPIERSPGRTLNEYRSPPR WARDG RE+AAGGLAPPRYESRYSD HLRRDRVD
Sbjct: 241 PRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGLAPPRYESRYSD-HLRRDRVD 300

Query: 301 YVEDSFRGRSKFDR-LPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKGFER 360
           Y+EDSFRGRSKFDR LP +DW+LRDNGRDDFI ERKGFERRP S                
Sbjct: 301 YLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFERRPPS---------------- 360

Query: 361 RPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVYV 420
                P L LLPQRGRW+RDVRERSRSPIRGP+RSPLRVPLRSPLS GLPPKD+RRDV+ 
Sbjct: 361 -----PPLPLLPQRGRWSRDVRERSRSPIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFG 385

Query: 421 ERERDDRRGLGRDRDGGPF 439
           ERERDDRRGLGRDR+GGPF
Sbjct: 421 ERERDDRRGLGRDREGGPF 385

[Close]
BLAST of CmaCh10G006350 vs. NCBI nr
Match: gi|778664414|ref|XP_011660290.1| (PREDICTED: uncharacterized protein LOC101209122 isoform X3 [Cucumis sativus])

HSP 1 Score: 574.3 bits (1479), Expect = 1.8e-160
Identity = 285/352 (80.97%), Postives = 301/352 (85.51%), Query Frame = 1 

Query: 88  FLLLQDMVLGALLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRD 147
           FL+  +     + GYR+HAGSVSP RRRD HRY+S+FDHS GLTRGREFGGGRDL RYRD
Sbjct: 13  FLISYEPTAFFISGYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRD 72

Query: 148 TSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFA 207
           TSPHY RRVSGGRPFGRG DGP  APGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFA
Sbjct: 73  TSPHYGRRVSGGRPFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFA 132

Query: 208 RREFCNNCNRPRTGAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRGW 267
           RREFCNNCNRPRTG GGSPRR GY GPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPR W
Sbjct: 133 RREFCNNCNRPRTGGGGSPRR-GYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSW 192

Query: 268 ARDGPREIAAGGLAPPRYESRYSDHHLRRDRVDYVEDSFRGRSKFDR-LPPSDWSLRDNG 327
           ARDG RE+AAGGLAPPRYESRYSD HLRRDRVDY+EDSFRGRSKFDR LP +DW+LRDNG
Sbjct: 193 ARDGSREMAAGGLAPPRYESRYSD-HLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNG 252

Query: 328 RDDFINERKGFERRPLSPKGFERRPLSPKGFERRPLSPPQLSLLPQRGRWARDVRERSRS 387
           RDDFI ERKGFERRP S                     P L LLPQRGRW+RDVR+RSRS
Sbjct: 253 RDDFITERKGFERRPPS---------------------PPLPLLPQRGRWSRDVRDRSRS 312

Query: 388 PIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVYVERERDDRRGLGRDRDGGPF 439
           PIRGP+RSPLRVPLRSPLS GLPPKD+RRDV+ ERERDDRRGLGRDR+GGPF
Sbjct: 313 PIRGPIRSPLRVPLRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 341

[Close]
BLAST of CmaCh10G006350 vs. NCBI nr
Match: gi|449449529|ref|XP_004142517.1| (PREDICTED: uncharacterized protein LOC101209122 isoform X2 [Cucumis sativus])

HSP 1 Score: 573.2 bits (1476), Expect = 4.0e-160
Identity = 283/339 (83.48%), Postives = 296/339 (87.32%), Query Frame = 1 

Query: 101 GYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGR 160
           GYR+HAGSVSP RRRD HRY+S+FDHS GLTRGREFGGGRDL RYRDTSPHY RRVSGGR
Sbjct: 50  GYRIHAGSVSPPRRRDVHRYVSNFDHSEGLTRGREFGGGRDLDRYRDTSPHYGRRVSGGR 109

Query: 161 PFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT 220
           PFGRG DGP  APGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT
Sbjct: 110 PFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT 169

Query: 221 GAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGL 280
           G GGSPRR GY GPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPR WARDG RE+AAGGL
Sbjct: 170 GGGGSPRR-GYAGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL 229

Query: 281 APPRYESRYSDHHLRRDRVDYVEDSFRGRSKFDR-LPPSDWSLRDNGRDDFINERKGFER 340
           APPRYESRYSD HLRRDRVDY+EDSFRGRSKFDR LP +DW+LRDNGRDDFI ERKGFER
Sbjct: 230 APPRYESRYSD-HLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFER 289

Query: 341 RPLSPKGFERRPLSPKGFERRPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVP 400
           RP S                     P L LLPQRGRW+RDVR+RSRSPIRGP+RSPLRVP
Sbjct: 290 RPPS---------------------PPLPLLPQRGRWSRDVRDRSRSPIRGPIRSPLRVP 349

Query: 401 LRSPLSGGLPPKDYRRDVYVERERDDRRGLGRDRDGGPF 439
           LRSPLS GLPPKD+RRDV+ ERERDDRRGLGRDR+GGPF
Sbjct: 350 LRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 365

[Close]
BLAST of CmaCh10G006350 vs. NCBI nr
Match: gi|659125536|ref|XP_008462734.1| (PREDICTED: uncharacterized protein LOC103501026 isoform X2 [Cucumis melo])

HSP 1 Score: 568.5 bits (1464), Expect = 9.8e-159
Identity = 281/339 (82.89%), Postives = 294/339 (86.73%), Query Frame = 1 

Query: 101 GYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGR 160
           GYR+HAGSVSP RRRD HRYIS+F+HS GL RGREFGGGRDL RYRDTSPHY RRV GGR
Sbjct: 50  GYRIHAGSVSPARRRDVHRYISNFNHSDGLARGREFGGGRDLDRYRDTSPHYGRRVGGGR 109

Query: 161 PFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT 220
           PFGRG DGP  APGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT
Sbjct: 110 PFGRGVDGPRLAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRT 169

Query: 221 GAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGL 280
           G GGSPRR GY GPPSLH+PPRRFAAHPIERSPGRTLNEYRSPPR WARDG RE+AAGGL
Sbjct: 170 GGGGSPRR-GYAGPPSLHTPPRRFAAHPIERSPGRTLNEYRSPPRSWARDGSREMAAGGL 229

Query: 281 APPRYESRYSDHHLRRDRVDYVEDSFRGRSKFDR-LPPSDWSLRDNGRDDFINERKGFER 340
           APPRYESRYSD HLRRDRVDY+EDSFRGRSKFDR LP +DW+LRDNGRDDFI ERKGFER
Sbjct: 230 APPRYESRYSD-HLRRDRVDYLEDSFRGRSKFDRPLPSADWALRDNGRDDFITERKGFER 289

Query: 341 RPLSPKGFERRPLSPKGFERRPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVP 400
           RP S                     P L LLPQRGRW+RDVRERSRSPIRGP+RSPLRVP
Sbjct: 290 RPPS---------------------PPLPLLPQRGRWSRDVRERSRSPIRGPIRSPLRVP 349

Query: 401 LRSPLSGGLPPKDYRRDVYVERERDDRRGLGRDRDGGPF 439
           LRSPLS GLPPKD+RRDV+ ERERDDRRGLGRDR+GGPF
Sbjct: 350 LRSPLSSGLPPKDFRRDVFGERERDDRRGLGRDREGGPF 365

The following BLAST results are available for this feature:
BLAST of CmaCh10G006350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBP56_HUMAN7.8e-0735.24TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1[more]
FUS_BOVIN3.9e-0630.68RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2[more]
FUS_HUMAN3.9e-0630.68RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1[more]
BLAST of CmaCh10G006350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M3K7_CUCSA1.2e-16080.97Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696450 PE=4 SV=1[more]
W9S109_9ROSA4.6e-13159.32TATA-binding protein-associated factor 2N OS=Morus notabilis GN=L484_001933 PE=4... [more]
A0A061GLL6_THECC4.0e-12757.01RNA-binding protein-related OS=Theobroma cacao GN=TCM_037850 PE=4 SV=1[more]
M5VPV5_PRUPE2.1e-12357.14Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007541mg PE=4 SV=1[more]
F6HH13_VITVI1.2e-11853.06Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03670 PE=4 SV=... [more]
BLAST of CmaCh10G006350 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28990.25.7e-5639.57 RNA-binding protein-related[more]
BLAST of CmaCh10G006350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449527|ref|XP_004142516.1|1.4e-19479.50PREDICTED: uncharacterized protein LOC101209122 isoform X1 [Cucumis sativus][more]
gi|659125534|ref|XP_008462733.1|1.4e-19279.04PREDICTED: uncharacterized protein LOC103501026 isoform X1 [Cucumis melo][more]
gi|778664414|ref|XP_011660290.1|1.8e-16080.97PREDICTED: uncharacterized protein LOC101209122 isoform X3 [Cucumis sativus][more]
gi|449449529|ref|XP_004142517.1|4.0e-16083.48PREDICTED: uncharacterized protein LOC101209122 isoform X2 [Cucumis sativus][more]
gi|659125536|ref|XP_008462734.1|9.8e-15982.89PREDICTED: uncharacterized protein LOC103501026 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G006350.1CmaCh10G006350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeGENE3DG3DSA:4.10.1060.10coord: 184..221
score: 5.1
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 192..218
score: 8.
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 194..215
scor
IPR001876Zinc finger, RanBP2-typePROFILEPS50199ZF_RANBP2_2coord: 190..221
score: 9
IPR001876Zinc finger, RanBP2-typeunknownSSF90209Ran binding protein zinc finger-likecoord: 182..221
score: 1.45
NoneNo IPR availablePANTHERPTHR23238RNA BINDING PROTEINcoord: 369..386
score: 7.1E-67coord: 403..438
score: 7.1E-67coord: 117..352
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh10G006350Cla010661Watermelon (97103) v1cmawmB070
CmaCh10G006350MELO3C024688Melon (DHL92) v3.5.1cmameB061
CmaCh10G006350ClCG06G008760Watermelon (Charleston Gray)cmawcgB070
CmaCh10G006350Lsi06G008560Bottle gourd (USVL1VR-Ls)cmalsiB074
CmaCh10G006350Cp4.1LG04g10230Cucurbita pepo (Zucchini)cmacpeB093
CmaCh10G006350Cp4.1LG18g04220Cucurbita pepo (Zucchini)cmacpeB080
CmaCh10G006350MELO3C024688.2Melon (DHL92) v3.6.1cmamedB063
CmaCh10G006350Cla97C06G118510Watermelon (97103) v2cmawmbB079
CmaCh10G006350Bhi02G000989Wax gourdcmawgoB0093
CmaCh10G006350Carg12208Silver-seed gourdcarcmaB0044
CmaCh10G006350Carg09841Silver-seed gourdcarcmaB0166
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh10G006350Melon (DHL92) v3.6.1cmamedB079
CmaCh10G006350Melon (DHL92) v3.6.1cmamedB058
CmaCh10G006350Melon (DHL92) v3.6.1cmamedB060
CmaCh10G006350Silver-seed gourdcarcmaB0793
CmaCh10G006350Silver-seed gourdcarcmaB1042
CmaCh10G006350Silver-seed gourdcarcmaB1234
CmaCh10G006350Silver-seed gourdcarcmaB1416
CmaCh10G006350Cucumber (Chinese Long) v3cmacucB0064
CmaCh10G006350Cucumber (Chinese Long) v3cmacucB0081
CmaCh10G006350Cucumber (Chinese Long) v3cmacucB0097
CmaCh10G006350Watermelon (97103) v2cmawmbB058
CmaCh10G006350Watermelon (97103) v2cmawmbB088
CmaCh10G006350Wax gourdcmawgoB0052
CmaCh10G006350Wax gourdcmawgoB0071
CmaCh10G006350Wax gourdcmawgoB0076
CmaCh10G006350Cucurbita maxima (Rimu)cmacmaB072
CmaCh10G006350Cucurbita maxima (Rimu)cmacmaB086
CmaCh10G006350Cucurbita maxima (Rimu)cmacmaB097
CmaCh10G006350Cucurbita maxima (Rimu)cmacmaB115
CmaCh10G006350Cucurbita maxima (Rimu)cmacmaB119
CmaCh10G006350Cucumber (Gy14) v1cgycmaB0283
CmaCh10G006350Cucumber (Gy14) v1cgycmaB0976
CmaCh10G006350Cucurbita moschata (Rifu)cmacmoB067
CmaCh10G006350Cucurbita moschata (Rifu)cmacmoB068
CmaCh10G006350Cucurbita moschata (Rifu)cmacmoB080
CmaCh10G006350Cucurbita moschata (Rifu)cmacmoB086
CmaCh10G006350Cucurbita moschata (Rifu)cmacmoB095
CmaCh10G006350Wild cucumber (PI 183967)cmacpiB073
CmaCh10G006350Wild cucumber (PI 183967)cmacpiB080
CmaCh10G006350Cucumber (Chinese Long) v2cmacuB075
CmaCh10G006350Cucumber (Chinese Long) v2cmacuB081
CmaCh10G006350Melon (DHL92) v3.5.1cmameB058
CmaCh10G006350Melon (DHL92) v3.5.1cmameB074
CmaCh10G006350Watermelon (Charleston Gray)cmawcgB042
CmaCh10G006350Watermelon (Charleston Gray)cmawcgB047
CmaCh10G006350Watermelon (97103) v1cmawmB043
CmaCh10G006350Watermelon (97103) v1cmawmB066
CmaCh10G006350Cucurbita pepo (Zucchini)cmacpeB079
CmaCh10G006350Cucurbita pepo (Zucchini)cmacpeB101
CmaCh10G006350Bottle gourd (USVL1VR-Ls)cmalsiB049
CmaCh10G006350Bottle gourd (USVL1VR-Ls)cmalsiB051
CmaCh10G006350Cucumber (Gy14) v2cgybcmaB010
CmaCh10G006350Cucumber (Gy14) v2cgybcmaB154