CmaCh09G012680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G012680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAnkyrin repeat protein
LocationCma_Chr09 : 8666633 .. 8667097 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATGGGTAATGGTTTCAAGCTCTTTCACACCATTTTCTTAGTGATTGTTTGGCAATATTGTGCAAAAGTGGGTGCCACTTTTGGGGATGAAACCGGTGTCATAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCCATTGTTGCACCAATTGGAAGTAGCACAAATGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCCCAAAGGCTTCGTCAACTGAAAGCATTGCTCTAACCCCGGAGGTTGCATCAGTTGAAAGCATTGCTCTAACCCCAGAGGTTGCATCGGTTGAAAGCATTGCTCTAACCCCAGAGGTTGCATCAGTTGAAAGCATTGCTCTAACTCCGAAGGCTGCACGAGTTGGAAGCACTCAAACCACAACCATTACACCAATTGGAAGTAGCACACAAGCATGA

mRNA sequence

ATGGTCATGGGTAATGGTTTCAAGCTCTTTCACACCATTTTCTTAGTGATTGTTTGGCAATATTGTGCAAAAGTGGGTGCCACTTTTGGGGATGAAACCGGTGTCATAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCCATTGTTGCACCAATTGGAAGTAGCACAAATGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCCCAAAGGCTTCGTCAACTGAAAGCATTGCTCTAACCCCGGAGGTTGCATCAGTTGAAAGCATTGCTCTAACCCCAGAGGTTGCATCGGTTGAAAGCATTGCTCTAACCCCAGAGGTTGCATCAGTTGAAAGCATTGCTCTAACTCCGAAGGCTGCACGAGTTGGAAGCACTCAAACCACAACCATTACACCAATTGGAAGTAGCACACAAGCATGA

Coding sequence (CDS)

ATGGTCATGGGTAATGGTTTCAAGCTCTTTCACACCATTTTCTTAGTGATTGTTTGGCAATATTGTGCAAAAGTGGGTGCCACTTTTGGGGATGAAACCGGTGTCATAAATCTCGATCATCAATTTTCATTTCGTGCCTTTGGATCACATGACACACAAGCCCCCATTGTTGCACCAATTGGAAGTAGCACAAATGTTTTAGTGGCAGCACCATTTGGAAGCATCGCTCAAACTCCCGAGGCTCTAACCCCAAAGGCTTCGTCAACTGAAAGCATTGCTCTAACCCCGGAGGTTGCATCAGTTGAAAGCATTGCTCTAACCCCAGAGGTTGCATCGGTTGAAAGCATTGCTCTAACCCCAGAGGTTGCATCAGTTGAAAGCATTGCTCTAACTCCGAAGGCTGCACGAGTTGGAAGCACTCAAACCACAACCATTACACCAATTGGAAGTAGCACACAAGCATGA

Protein sequence

MVMGNGFKLFHTIFLVIVWQYCAKVGATFGDETGVINLDHQFSFRAFGSHDTQAPIVAPIGSSTNVLVAAPFGSIAQTPEALTPKASSTESIALTPEVASVESIALTPEVASVESIALTPEVASVESIALTPKAARVGSTQTTTITPIGSSTQA
Homology
[Close]
BLAST of CmaCh09G012680 vs. TrEMBL
Match: A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 56/151 (37.09%), Postives = 75/151 (49.67%), Query Frame = 1 

Query: 5   NGFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGS 64
           NGFKLFHT+FLV+ WQ C KVGATFGD TG +   LD +   RAFGSH TQA  VAP+ S
Sbjct: 6   NGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSS 65

Query: 65  -STNVLVAAPFGSIAQTPEALTPKASSTESIALTPEVASVESIALTPEVASVESIALTPE 124
               VLV +    I+    A +   S            SV +I+   E++     +    
Sbjct: 66  VGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVV 125

Query: 125 VASVESIALTPKAARVGSTQTTTITPIGSST 153
               ++      ++ V  +Q   IT  GSS+
Sbjct: 126 SHGGKTGVNNGSSSLVAVSQGQEITKKGSSS 156

[Close]
BLAST of CmaCh09G012680 vs. TrEMBL
Match: A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 

Query: 3  MGNGFKLFHTIFLVIVWQYCAKVGATFGDETGVINLD--HQFSFRAFGSHDTQAPIVAPI 62
          M  GFKLF T+FLV  WQ+C KV ATF D TGV+NLD  H FSFR FG      P     
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTP----- 60

Query: 63 GSSTNVLVAAPFGSIAQTPEALTPKASST 90
            +T+  +A+   + A+ P  + P    T
Sbjct: 61 --NTDGSLASTVNNHAEAPTGIAPVGLDT 82

[Close]
BLAST of CmaCh09G012680 vs. TrEMBL
Match: A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-08
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 1   MVMGNGFKLFHTIFLVIVWQY-CAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIV 60
           M M  GFKLF T+ LV  W+Y CA+VGATF D TGV+N  L+HQFSFRAFG      P V
Sbjct: 1   MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

Query: 61  APIGSST---NVLVAAPFGSIAQTPEALTPKASSTESIAL 95
               +ST    +   AP G      E +  K    +S  L
Sbjct: 61  DGSITSTVKKQIHAEAPAGIAPVGLETMINKEDKVQSYDL 100

[Close]
BLAST of CmaCh09G012680 vs. NCBI nr
Match: gi|659101536|ref|XP_008451657.1| (PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-14
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 6  GFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGSS 65
          GFKLFHT+FLV+VWQ C KVGATFGD TG +   +D++F FRAFGSH  QAP VAP+ S 
Sbjct: 5  GFKLFHTLFLVLVWQCCGKVGATFGDFTGSVEPAVDNKFPFRAFGSHGKQAPAVAPVSSV 64

Query: 66 TNVLVAAPFGSIAQT 79
             ++    G    T
Sbjct: 65 GGKILVVSHGHETST 79

[Close]
BLAST of CmaCh09G012680 vs. NCBI nr
Match: gi|659101534|ref|XP_008451656.1| (PREDICTED: cell wall protein AWA1-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 6  GFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGSS 65
          GFKLFHT+FLV+VWQ C KV ATFGD TG +   +D +F FRAFGSH T  P VAP+ S 
Sbjct: 5  GFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSSV 64

Query: 66 TNVLVAAPFGSIAQT 79
             ++    G    T
Sbjct: 65 GGKILVVSHGHETST 79

[Close]
BLAST of CmaCh09G012680 vs. NCBI nr
Match: gi|700189732|gb|KGN44965.1| (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1 

Query: 3  MGNGFKLFHTIFLVIVWQYCAKVGATFGDETGVINLD--HQFSFRAFGSHDTQAPIVAPI 62
          M  GFKLF T+FLV  WQ+C KV ATF D TGV+NLD  H FSFR FG      P     
Sbjct: 1  MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTP----- 60

Query: 63 GSSTNVLVAAPFGSIAQTPEALTPKASST 90
            +T+  +A+   + A+ P  + P    T
Sbjct: 61 --NTDGSLASTVNNHAEAPTGIAPVGLDT 82

[Close]
BLAST of CmaCh09G012680 vs. NCBI nr
Match: gi|700189730|gb|KGN44963.1| (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 56/151 (37.09%), Postives = 75/151 (49.67%), Query Frame = 1 

Query: 5   NGFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGS 64
           NGFKLFHT+FLV+ WQ C KVGATFGD TG +   LD +   RAFGSH TQA  VAP+ S
Sbjct: 6   NGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSS 65

Query: 65  -STNVLVAAPFGSIAQTPEALTPKASSTESIALTPEVASVESIALTPEVASVESIALTPE 124
               VLV +    I+    A +   S            SV +I+   E++     +    
Sbjct: 66  VGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVV 125

Query: 125 VASVESIALTPKAARVGSTQTTTITPIGSST 153
               ++      ++ V  +Q   IT  GSS+
Sbjct: 126 SHGGKTGVNNGSSSLVAVSQGQEITKKGSSS 156

[Close]
BLAST of CmaCh09G012680 vs. NCBI nr
Match: gi|700189736|gb|KGN44969.1| (hypothetical protein Csa_7G399280 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 1   MVMGNGFKLFHTIFLVIVWQY-CAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIV 60
           M M  GFKLF T+ LV  W+Y CA+VGATF D TGV+N  L+HQFSFRAFG      P V
Sbjct: 1   MEMARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

Query: 61  APIGSST---NVLVAAPFGSIAQTPEALTPKASSTESIAL 95
               +ST    +   AP G      E +  K    +S  L
Sbjct: 61  DGSITSTVKKQIHAEAPAGIAPVGLETMINKEDKVQSYDL 100

The following BLAST results are available for this feature:
BLAST of CmaCh09G012680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K662_CUCSA2.7e-0937.09Ankyrin repeat protein OS=Cucumis sativus GN=Csa_7G398740 PE=4 SV=1[more]
A0A0A0K5J0_CUCSA2.7e-0943.82Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1[more]
A0A0A0K7W7_CUCSA3.0e-0845.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1[more]
BLAST of CmaCh09G012680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101536|ref|XP_008451657.1|5.2e-1456.00PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Cucumis melo... [more]
gi|659101534|ref|XP_008451656.1|1.3e-1253.33PREDICTED: cell wall protein AWA1-like [Cucumis melo][more]
gi|700189732|gb|KGN44965.1|3.9e-0943.82hypothetical protein Csa_7G398750 [Cucumis sativus][more]
gi|700189730|gb|KGN44963.1|3.9e-0937.09Ankyrin repeat protein [Cucumis sativus][more]
gi|700189736|gb|KGN44969.1|4.3e-0845.00hypothetical protein Csa_7G399280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012680.1CmaCh09G012680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G012680Cucurbita moschata (Rifu)cmacmoB028
CmaCh09G012680Melon (DHL92) v3.5.1cmameB010
CmaCh09G012680Cucurbita pepo (Zucchini)cmacpeB062