CmaCh09G009290 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G009290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Cma_Chr09 : 4642694 .. 4643296 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGAATCCGGCGGCTGCTGCCGGTGTTGTTTCAGCTTCATCTTAACTTCCGGCTTCGCTGCTCTGTTCTTATGGCTCAGCCTTCGAACCCGCAAACCCAAATGCTCGATCGAATCTTTTTACATTCCAGCCTTAAATCAATCCCTAAATTCGCCCTTAAATTCCACCGTCTCCTTCGATCTGCGCCTCAAAAACCAGAACAAAGACAAATCAGTCTTCTACGACTCTCTCAATCTCAACCTCACTCTCGTCGGAGGGCGGCCGCTGGGCAACGTGACAGTGCCCGGATTCCACCAGGGCCGTGGCAAGAAGGCGTTCAGAAACGAGACCATCGAAGCCCGTGGAGTGGATTGGAAGGCGGTTTCCCGGAATGGGTCGGCGATTTTCCGGCTGGATTTGGCGACGGCGGTCCGGTTCAAGATCTTGTTCTGGAATACCAAGAGGGAGAATTTGAGAGTCGGAGCAGAGTTCAAAGTCAACAAGCAGGGAGCGACGGAATACCCAGGGATCACGCTTAGCTCCGGCGCCGCCGTGCCCGACGGCTCGCCGGTGACAGTTATCTGGAGTTCTTGGGTGTTTGTCTTGTGGAAACTTTTCTGA

mRNA sequence

ATGACGGAATCCGGCGGCTGCTGCCGGTGTTGTTTCAGCTTCATCTTAACTTCCGGCTTCGCTGCTCTGTTCTTATGGCTCAGCCTTCGAACCCGCAAACCCAAATGCTCGATCGAATCTTTTTACATTCCAGCCTTAAATCAATCCCTAAATTCGCCCTTAAATTCCACCGTCTCCTTCGATCTGCGCCTCAAAAACCAGAACAAAGACAAATCAGTCTTCTACGACTCTCTCAATCTCAACCTCACTCTCGTCGGAGGGCGGCCGCTGGGCAACGTGACAGTGCCCGGATTCCACCAGGGCCGTGGCAAGAAGGCGTTCAGAAACGAGACCATCGAAGCCCGTGGAGTGGATTGGAAGGCGGTTTCCCGGAATGGGTCGGCGATTTTCCGGCTGGATTTGGCGACGGCGGTCCGGTTCAAGATCTTGTTCTGGAATACCAAGAGGGAGAATTTGAGAGTCGGAGCAGAGTTCAAAGTCAACAAGCAGGGAGCGACGGAATACCCAGGGATCACGCTTAGCTCCGGCGCCGCCGTGCCCGACGGCTCGCCGGTGACAGTTATCTGGAGTTCTTGGGTGTTTGTCTTGTGGAAACTTTTCTGA

Coding sequence (CDS)

ATGACGGAATCCGGCGGCTGCTGCCGGTGTTGTTTCAGCTTCATCTTAACTTCCGGCTTCGCTGCTCTGTTCTTATGGCTCAGCCTTCGAACCCGCAAACCCAAATGCTCGATCGAATCTTTTTACATTCCAGCCTTAAATCAATCCCTAAATTCGCCCTTAAATTCCACCGTCTCCTTCGATCTGCGCCTCAAAAACCAGAACAAAGACAAATCAGTCTTCTACGACTCTCTCAATCTCAACCTCACTCTCGTCGGAGGGCGGCCGCTGGGCAACGTGACAGTGCCCGGATTCCACCAGGGCCGTGGCAAGAAGGCGTTCAGAAACGAGACCATCGAAGCCCGTGGAGTGGATTGGAAGGCGGTTTCCCGGAATGGGTCGGCGATTTTCCGGCTGGATTTGGCGACGGCGGTCCGGTTCAAGATCTTGTTCTGGAATACCAAGAGGGAGAATTTGAGAGTCGGAGCAGAGTTCAAAGTCAACAAGCAGGGAGCGACGGAATACCCAGGGATCACGCTTAGCTCCGGCGCCGCCGTGCCCGACGGCTCGCCGGTGACAGTTATCTGGAGTTCTTGGGTGTTTGTCTTGTGGAAACTTTTCTGA

Protein sequence

MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSFDLRLKNQNKDKSVFYDSLNLNLTLVGGRPLGNVTVPGFHQGRGKKAFRNETIEARGVDWKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYPGITLSSGAAVPDGSPVTVIWSSWVFVLWKLF

Homology

[Close]

BLAST of CmaCh09G009290 vs. Swiss-Prot
Match: NDR1_ARATH (Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.6e-39
Identity = 94/214 (43.93%), Postives = 127/214 (59.35%), Query Frame = 1


Query: 2   TESG-GCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 61
           TE G  CC CC SFI T+G  +LFLWLSLR  KPKCSI++F+IPAL +  NS  N+T++F
Sbjct: 8   TEGGRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNF 67

Query: 62  DLRLKNQNKDKSVFYDSLNLNLTLVGGRPL--------GNVTVPGFHQGRGKKA------ 121
            +R  N NKDK ++YD ++LN + +    +        GN TVP F+QG  KKA      
Sbjct: 68  MVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQV 127

Query: 122 --FRNETIEARGVDWKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQG 181
               N+T+       +AV  NGSA+FRLDL T VRFKI+FW TKR  + VGA+ +VN  G
Sbjct: 128 KPLNNQTV------LRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG 187

Query: 182 A-TEYPGITL---SSGAAVPDGSPVTVIWSSWVF 195
              +  GI +    S   +    P++V+ +  VF
Sbjct: 188 VKAQKKGIKMKKSDSSFPLRSSFPISVLMNLLVF 215

[Close]

BLAST of CmaCh09G009290 vs. TrEMBL
Match: A0A0A0L886_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418790 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 139/196 (70.92%), Postives = 165/196 (84.18%), Query Frame = 1


Query: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 60
           M ESG CC+CCF FI+T+GF+ALFLWLSLRTRKPKCSIE FYIPALNQSLNS  NS++ F
Sbjct: 1   MAESGWCCKCCFKFIITAGFSALFLWLSLRTRKPKCSIEFFYIPALNQSLNSSSNSSLIF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVG--GRPLGNVTVPGFHQGRGKKAFRNETIEARGVD 120
           DLRLKNQNK+KSV+YD++ LNLTL+    R +GN+TVPGFHQGR KKA R E+ EARGVD
Sbjct: 61  DLRLKNQNKEKSVYYDTIYLNLTLLDETRRLVGNLTVPGFHQGRDKKALRKESFEARGVD 120

Query: 121 WKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYP-GITLSSGA 180
           WKAVSRNGS + RLDLATAVR+KIL W TKRENLR+G E KVN+QG  + P GITL+SGA
Sbjct: 121 WKAVSRNGSTVIRLDLATAVRYKILLWKTKRENLRLGTEVKVNEQGVKDNPHGITLNSGA 180

Query: 181 AVPDGSPVTVIWSSWV 194
           AVP GS ++  W++++
Sbjct: 181 AVPVGS-LSNFWAAFL 195

[Close]

BLAST of CmaCh09G009290 vs. TrEMBL
Match: D2CFI3_COFAR (Non-race specific disease resistance protein 1-like protein b OS=Coffea arabica GN=NDR1b PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 107/205 (52.20%), Postives = 126/205 (61.46%), Query Frame = 1


Query: 2   TESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPL---NSTV 61
           + +GGCCRCC SFILTSG  ALF+WLSLR  KP CSIE FY+P+LN + NS     N T+
Sbjct: 6   SSAGGCCRCCCSFILTSGLTALFMWLSLRGSKPSCSIEDFYVPSLNATDNSTTTRSNHTL 65

Query: 62  SFDLRLKNQNKDKSVFYDSLNLNLTLVGGRPLG--NVTVPGFHQGRGKKAFRNETIEARG 121
            FDLRLKN+ KDK V YD LNL    V    LG  N TVP F+QG  KKA R E ++  G
Sbjct: 66  YFDLRLKNEMKDKGVGYDDLNLTFFYVQNGSLGIANYTVPSFYQGHDKKARRKELVQTYG 125

Query: 122 VDWKAVSR---NGSAI-FRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQG-ATEYPGI 181
           V W+A  R   NGS + FR+ L T VR+KILFW TKR  L+VGA   VN  G      GI
Sbjct: 126 VPWEAAYRAVSNGSTVTFRVGLTTRVRYKILFWYTKRHGLKVGANVDVNNSGKKVNKKGI 185

Query: 182 TLSSGAAVPDGSPVTVIWSSWVFVL 197
            L SGA      P  V+ S  ++ L
Sbjct: 186 RLKSGAPESVRCPGLVVISIALYFL 210

[Close]

BLAST of CmaCh09G009290 vs. TrEMBL
Match: A0A068UC03_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021086001 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 107/205 (52.20%), Postives = 125/205 (60.98%), Query Frame = 1


Query: 2   TESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPL---NSTV 61
           +  GGCCRCC SFILTSG  ALF+WLSLR  KP CSIE FY+P+LN + NS     N T+
Sbjct: 6   SSGGGCCRCCCSFILTSGLTALFMWLSLRGSKPSCSIEDFYVPSLNATDNSTTTRSNHTL 65

Query: 62  SFDLRLKNQNKDKSVFYDSLNLNLTLVGGRPLG--NVTVPGFHQGRGKKAFRNETIEARG 121
            FDLRLKN+ KDK V YD LNL    V    LG  N TVP F+QG  KKA R E ++  G
Sbjct: 66  YFDLRLKNEMKDKGVGYDDLNLTFFYVQNGSLGIANYTVPSFYQGHDKKARRKELVQTYG 125

Query: 122 VDWKAVSR---NGSAI-FRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQG-ATEYPGI 181
           V W+A  R   NGS + FR+ L T VR+KILFW TKR  L+VGA   VN  G      GI
Sbjct: 126 VPWEAAYRAVSNGSTVTFRVGLTTRVRYKILFWYTKRHGLKVGANLDVNNSGKKINKKGI 185

Query: 182 TLSSGAAVPDGSPVTVIWSSWVFVL 197
            L SGA      P  V+ S  ++ L
Sbjct: 186 RLKSGAPESVRCPGLVVISIALYCL 210

[Close]

BLAST of CmaCh09G009290 vs. TrEMBL
Match: M5WMU3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026693mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 92/174 (52.87%), Postives = 113/174 (64.94%), Query Frame = 1


Query: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 60
           M ESGGCCRCCFSFI T G  ALF+WLSLRT KP C + S YIPALN++LN   N T+  
Sbjct: 1   MAESGGCCRCCFSFIFTLGLTALFMWLSLRTSKPTCKVRSLYIPALNKTLNDTTNKTLYV 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGG-RPLGNVTVPGFHQGRGKKAFRNETIEARGVDW 120
            LRL+N NKDK ++YD++NLN TL    +P+    V  F+QG  KKA +    E + ++W
Sbjct: 61  TLRLENGNKDKGIYYDAINLNFTLPNATKPIATAVVSSFYQGHQKKATKAAVGEPKELNW 120

Query: 121 KAVSR----NGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYP 170
            AVS     NG+  FR+DL TAVRFKI+FW TKR  L V A+  VN  G    P
Sbjct: 121 TAVSHATYSNGTVHFRVDLVTAVRFKIMFWRTKRRRLMVRADVVVNDSGGYVNP 174

[Close]

BLAST of CmaCh09G009290 vs. TrEMBL
Match: D2CFI2_COFAR (Non-race specific disease resistance protein 1-like protein a OS=Coffea arabica GN=NDR1a PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-43
Identity = 106/205 (51.71%), Postives = 125/205 (60.98%), Query Frame = 1


Query: 2   TESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPL---NSTV 61
           + +GGCCRCC SFILTSG  ALF+WLSLR  KP CSIE FY+P+LN + NS     N T+
Sbjct: 6   SSAGGCCRCCCSFILTSGLTALFMWLSLRGSKPSCSIEDFYVPSLNATDNSTTTRSNHTL 65

Query: 62  SFDLRLKNQNKDKSVFYDSLNLNLTLVGGRPLG--NVTVPGFHQGRGKKAFRNETIEARG 121
            FDLR KN+ KDK V YD LNL    V    LG  N TVP F+QG  KKA R E ++  G
Sbjct: 66  YFDLRFKNEMKDKGVGYDDLNLTFFYVQNGSLGIANYTVPSFYQGHDKKARRKELVQTYG 125

Query: 122 VDWKAVSR---NGSAI-FRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQG-ATEYPGI 181
           V W+A  R   NGS + FR+ L T VR+KILFW TKR  L+VGA   VN  G      GI
Sbjct: 126 VPWEAAYRAVSNGSTVTFRVGLTTRVRYKILFWYTKRHGLKVGANVDVNNSGKKVNKKGI 185

Query: 182 TLSSGAAVPDGSPVTVIWSSWVFVL 197
            L SGA      P  V+ S  ++ L
Sbjct: 186 RLKSGAPESVRCPGLVVISIALYFL 210

[Close]

BLAST of CmaCh09G009290 vs. TAIR10
Match: AT3G20600.1 (AT3G20600.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-40
Identity = 94/214 (43.93%), Postives = 127/214 (59.35%), Query Frame = 1


Query: 2   TESG-GCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 61
           TE G  CC CC SFI T+G  +LFLWLSLR  KPKCSI++F+IPAL +  NS  N+T++F
Sbjct: 8   TEGGRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNF 67

Query: 62  DLRLKNQNKDKSVFYDSLNLNLTLVGGRPL--------GNVTVPGFHQGRGKKA------ 121
            +R  N NKDK ++YD ++LN + +    +        GN TVP F+QG  KKA      
Sbjct: 68  MVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQV 127

Query: 122 --FRNETIEARGVDWKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQG 181
               N+T+       +AV  NGSA+FRLDL T VRFKI+FW TKR  + VGA+ +VN  G
Sbjct: 128 KPLNNQTV------LRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG 187

Query: 182 A-TEYPGITL---SSGAAVPDGSPVTVIWSSWVF 195
              +  GI +    S   +    P++V+ +  VF
Sbjct: 188 VKAQKKGIKMKKSDSSFPLRSSFPISVLMNLLVF 215

[Close]

BLAST of CmaCh09G009290 vs. TAIR10
Match: AT3G20590.1 (AT3G20590.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 145.6 bits (366), Expect = 3.3e-35
Identity = 80/175 (45.71%), Postives = 109/175 (62.29%), Query Frame = 1


Query: 7   CCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSFDLRLKN 66
           CC C F FI T+   AL LWLSLR +KPKCSI++FYIPAL+++L+S  N+T++F +R  N
Sbjct: 14  CCTCFFKFIFTTRLGALILWLSLRAKKPKCSIQNFYIPALSKNLSSRDNTTLNFMVRCDN 73

Query: 67  QNKDKSVFYDSLNLNLTLVGGRP--------LGNVTVPGFHQGRGKKA--------FRNE 126
            NKDK ++YD ++L  + +            + N TVP F+QG  KKA          N+
Sbjct: 74  PNKDKGIYYDDVHLTFSTINTTTTNSSDLVLVANYTVPKFYQGHKKKAKKWGQVWPLNNQ 133

Query: 127 TIEARGVDWKAVSRNGSAIFRLDLATAVRFKILFWNTK-RENLRVGAEFKVNKQG 165
           T+       +AV  NGSA+FRLDL T VRFKI+FW TK    ++VGA+ +VN  G
Sbjct: 134 TV------LRAVLPNGSAVFRLDLKTHVRFKIVFWKTKWYRRIKVGADVEVNGDG 182

[Close]

BLAST of CmaCh09G009290 vs. TAIR10
Match: AT3G20610.1 (AT3G20610.1 non-race specific disease resistance protein, putative)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-26
Identity = 73/184 (39.67%), Postives = 102/184 (55.43%), Query Frame = 1


Query: 13  SFILTSGFAALFLWLSLRTRK-PKCSIESFYIPALNQSLNSPLNSTVSFDLRLKNQNKDK 72
           + +  S   AL LWLS      P+CSI  FYIPALN+SL S  N+T++F +RLKN N  +
Sbjct: 19  TLLYVSFLLALCLWLSTLVHHIPRCSIHYFYIPALNKSLISSDNTTLNFMVRLKNINAKQ 78

Query: 73  SVFYDSLNLNL-TLVGGRPL--GNVTVPGFHQGRGKKA--------FRNETIEARGVDWK 132
            ++Y+ L+L+  T +    L   N TVP F+QG  KKA        F N+T+       +
Sbjct: 79  GIYYEDLHLSFSTRINNSSLLVANYTVPRFYQGHEKKAKKWGQALPFNNQTV------IQ 138

Query: 133 AVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYPGITLSSGAAVP 185
           AV  NGSAIFR+DL   V++K++ W TKR  L+     +VN+ GAT+           + 
Sbjct: 139 AVLPNGSAIFRVDLKMQVKYKVMSWKTKRYKLKASVNLEVNEDGATKVKDKEDGIKMKIS 196

[Close]

BLAST of CmaCh09G009290 vs. TAIR10
Match: AT4G05220.1 (AT4G05220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-09
Identity = 45/168 (26.79%), Postives = 74/168 (44.05%), Query Frame = 1


Query: 11  CFSFILTS---GFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSFDLRLKNQ 70
           C  F+L     G  A  LWLSLR  +P+  I+ F +  L+Q      N+ ++F++ + N 
Sbjct: 47  CAMFLLVLFFVGVIAFILWLSLRPHRPRFHIQDFVVQGLDQPTGVE-NARIAFNVTILNP 106

Query: 71  NKDKSVFYDSLNLNLTL----VGGRPLGNVTVPGFHQGRGKK----AFRNETIEARGVDW 130
           N+   V++DS+  ++      VG  PL N   P F Q              ++      W
Sbjct: 107 NQHMGVYFDSMEGSIYYKDQRVGLIPLLN---PFFQQPTNTTIVTGTLTGASLTVNSNRW 166

Query: 131 KAVSRN---GSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQG 165
              S +   G+  FRLD+ + +RFK+  W +K   +       V + G
Sbjct: 167 TEFSNDRAQGTVGFRLDIVSTIRFKLHRWISKHHRMHANCNIVVGRDG 210

[Close]

BLAST of CmaCh09G009290 vs. NCBI nr
Match: gi|659109091|ref|XP_008454544.1| (PREDICTED: protein NDR1-like [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 9.2e-80
Identity = 153/202 (75.74%), Postives = 171/202 (84.65%), Query Frame = 1


Query: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNST-VS 60
           MTESG CC+CCF FI+T+GFAALFLWLSLRTRKPKCSIESFYIPALNQSLNS  NST + 
Sbjct: 1   MTESGWCCKCCFKFIITAGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSSSNSTTLY 60

Query: 61  FDLRLKNQNKDKSVFYDSLNLNLTLV--GGRPLGNVTVPGFHQGRGKKAFRNETIEARGV 120
           FDLRLKNQNKDKSV+YD++ LN TL+    RP+GN+TVPGFHQGR KKA R E++EARGV
Sbjct: 61  FDLRLKNQNKDKSVYYDTIYLNFTLLDEARRPVGNLTVPGFHQGRDKKALRKESVEARGV 120

Query: 121 DWKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYP-GITLSSG 180
           DWKAVSRNGS I RLDLATAVR+KIL W TKRENLR+G E KVN QG  + P GITL+SG
Sbjct: 121 DWKAVSRNGSTIVRLDLATAVRYKILLWKTKRENLRLGTEIKVNGQGLKDNPHGITLNSG 180

Query: 181 AAVPDGSPVTVIWSSWVFVLWK 199
           AA+P G+ V VIWS WVFV WK
Sbjct: 181 AAMPGGTLVRVIWSFWVFVWWK 202

[Close]

BLAST of CmaCh09G009290 vs. NCBI nr
Match: gi|449468636|ref|XP_004152027.1| (PREDICTED: protein NDR1-like [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 7.8e-79
Identity = 150/203 (73.89%), Postives = 171/203 (84.24%), Query Frame = 1


Query: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 60
           M ESG CC+CCF FI+T+GF+ALFLWLSLRTRKPKCSIE FYIPALNQSLNS  NS++ F
Sbjct: 1   MAESGWCCKCCFKFIITAGFSALFLWLSLRTRKPKCSIEFFYIPALNQSLNSSSNSSLIF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVG--GRPLGNVTVPGFHQGRGKKAFRNETIEARGVD 120
           DLRLKNQNK+KSV+YD++ LNLTL+    R +GN+TVPGFHQGR KKA R E+ EARGVD
Sbjct: 61  DLRLKNQNKEKSVYYDTIYLNLTLLDETRRLVGNLTVPGFHQGRDKKALRKESFEARGVD 120

Query: 121 WKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYP-GITLSSGA 180
           WKAVSRNGS + RLDLATAVR+KIL W TKRENLR+G E KVN+QG  + P GITL+SGA
Sbjct: 121 WKAVSRNGSTVIRLDLATAVRYKILLWKTKRENLRLGTEVKVNEQGVKDNPHGITLNSGA 180

Query: 181 AVPDGSPVTVIWSSWVFVLWKLF 201
           AVP GS V VIWS WVFVLW +F
Sbjct: 181 AVPVGSLVRVIWSFWVFVLWIIF 203

[Close]

BLAST of CmaCh09G009290 vs. NCBI nr
Match: gi|700202855|gb|KGN57988.1| (hypothetical protein Csa_3G418790 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.6e-71
Identity = 139/196 (70.92%), Postives = 165/196 (84.18%), Query Frame = 1


Query: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 60
           M ESG CC+CCF FI+T+GF+ALFLWLSLRTRKPKCSIE FYIPALNQSLNS  NS++ F
Sbjct: 1   MAESGWCCKCCFKFIITAGFSALFLWLSLRTRKPKCSIEFFYIPALNQSLNSSSNSSLIF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVG--GRPLGNVTVPGFHQGRGKKAFRNETIEARGVD 120
           DLRLKNQNK+KSV+YD++ LNLTL+    R +GN+TVPGFHQGR KKA R E+ EARGVD
Sbjct: 61  DLRLKNQNKEKSVYYDTIYLNLTLLDETRRLVGNLTVPGFHQGRDKKALRKESFEARGVD 120

Query: 121 WKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYP-GITLSSGA 180
           WKAVSRNGS + RLDLATAVR+KIL W TKRENLR+G E KVN+QG  + P GITL+SGA
Sbjct: 121 WKAVSRNGSTVIRLDLATAVRYKILLWKTKRENLRLGTEVKVNEQGVKDNPHGITLNSGA 180

Query: 181 AVPDGSPVTVIWSSWV 194
           AVP GS ++  W++++
Sbjct: 181 AVPVGS-LSNFWAAFL 195

[Close]

BLAST of CmaCh09G009290 vs. NCBI nr
Match: gi|657987694|ref|XP_008386009.1| (PREDICTED: protein NDR1-like [Malus domestica])

HSP 1 Score: 189.9 bits (481), Expect = 4.3e-45
Identity = 96/169 (56.80%), Postives = 116/169 (68.64%), Query Frame = 1


Query: 3   ESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSFDL 62
           +SGGCCRCCFSFI T G  ALF+WLSLRT  PKC+I SFY+PALN++LN   N+TV   L
Sbjct: 4   QSGGCCRCCFSFIFTLGLTALFVWLSLRTSNPKCTIRSFYLPALNRTLNDTKNTTVFVTL 63

Query: 63  RLKNQNKDKSVFYDSLNLNLTL---VGGRPLGNVTVPGFHQGRGKKAFRNETIEARGVDW 122
           RL N NKDK V+YD++NL   L     G P+    VP F+QG  K A +   +  +G++W
Sbjct: 64  RLGNTNKDKGVYYDAVNLTFRLQPNATGIPVATYAVPRFYQGHKKTATKKVVVGPQGLNW 123

Query: 123 KAVSR----NGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQG 165
            AVS     NGSAIFR+DLATAVRFKI+FW TKR  L VGA+  VN  G
Sbjct: 124 TAVSSGVYPNGSAIFRVDLATAVRFKIMFWRTKRHXLNVGADVLVNDSG 172

[Close]

BLAST of CmaCh09G009290 vs. NCBI nr
Match: gi|645278720|ref|XP_008244361.1| (PREDICTED: protein NDR1-like [Prunus mume])

HSP 1 Score: 186.0 bits (471), Expect = 6.3e-44
Identity = 92/174 (52.87%), Postives = 114/174 (65.52%), Query Frame = 1


Query: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 60
           M ESGGCCRCCFSFI T G  ALF+WLSLRT  P C + S YIPALN++LN   N T+  
Sbjct: 1   MAESGGCCRCCFSFIFTLGLTALFMWLSLRTSNPTCKVRSLYIPALNRTLNDTTNKTLYV 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGG-RPLGNVTVPGFHQGRGKKAFRNETIEARGVDW 120
            LRL+N NKDK ++YD++NLN TL    +P+    V  F+QG  KKA ++   E + ++W
Sbjct: 61  TLRLENHNKDKGIYYDAINLNFTLPNATKPIATAFVRNFYQGHQKKATKSAVGEPKELNW 120

Query: 121 KAVSR----NGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYP 170
            AVS     NG+  FR+DL TAVRFKI+FW TKR  L VGA+  VN  G    P
Sbjct: 121 TAVSNATYSNGTVHFRVDLVTAVRFKIMFWRTKRHRLMVGADVVVNDSGGYVNP 174

The following BLAST results are available for this feature:

BLAST of CmaCh09G009290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDR1_ARATH	3.6e-39	43.93	Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1	[more]

BLAST of CmaCh09G009290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L886_CUCSA	1.1e-71	70.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418790 PE=4 SV=1	[more]
D2CFI3_COFAR	1.3e-43	52.20	Non-race specific disease resistance protein 1-like protein b OS=Coffea arabica ...	[more]
A0A068UC03_COFCA	1.7e-43	52.20	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021086001 PE=4 SV=1	[more]
M5WMU3_PRUPE	1.7e-43	52.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026693mg PE=4 SV=1	[more]
D2CFI2_COFAR	3.7e-43	51.71	Non-race specific disease resistance protein 1-like protein a OS=Coffea arabica ...	[more]

BLAST of CmaCh09G009290 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20600.1	2.0e-40	43.93	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G20590.1	3.3e-35	45.71	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G20610.1	3.7e-26	39.67	non-race specific disease resistance protein, putative	[more]
AT4G05220.1	3.1e-09	26.79	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of CmaCh09G009290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109091\|ref\|XP_008454544.1\|	9.2e-80	75.74	PREDICTED: protein NDR1-like [Cucumis melo]	[more]
gi\|449468636\|ref\|XP_004152027.1\|	7.8e-79	73.89	PREDICTED: protein NDR1-like [Cucumis sativus]	[more]
gi\|700202855\|gb\|KGN57988.1\|	1.6e-71	70.92	hypothetical protein Csa_3G418790 [Cucumis sativus]	[more]
gi\|657987694\|ref\|XP_008386009.1\|	4.3e-45	56.80	PREDICTED: protein NDR1-like [Malus domestica]	[more]
gi\|645278720\|ref\|XP_008244361.1\|	6.3e-44	52.87	PREDICTED: protein NDR1-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G009290.1	CmaCh09G009290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 62..149 score: 1.
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 5..189 score: 1.8
None	No IPR available	PANTHER	PTHR31415:SF22	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED	coord: 5..189 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G009290	Cucsa.267030	Cucumber (Gy14) v1	cgycmaB0746
CmaCh09G009290	Cla004211	Watermelon (97103) v1	cmawmB030
CmaCh09G009290	Csa3G418790	Cucumber (Chinese Long) v2	cmacuB015
CmaCh09G009290	MELO3C018104	Melon (DHL92) v3.5.1	cmameB033
CmaCh09G009290	ClCG05G014750	Watermelon (Charleston Gray)	cmawcgB025
CmaCh09G009290	CSPI03G23340	Wild cucumber (PI 183967)	cmacpiB015
CmaCh09G009290	CmoCh09G009260	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G009290	Lsi04G012380	Bottle gourd (USVL1VR-Ls)	cmalsiB026
CmaCh09G009290	Cp4.1LG06g08970	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G009290	MELO3C018104.2	Melon (DHL92) v3.6.1	cmamedB032
CmaCh09G009290	CsaV3_3G023120	Cucumber (Chinese Long) v3	cmacucB0022
CmaCh09G009290	Cla97C03G056190	Watermelon (97103) v2	cmawmbB025
CmaCh09G009290	Cla97C05G095960	Watermelon (97103) v2	cmawmbB030
CmaCh09G009290	Bhi09G001634	Wax gourd	cmawgoB0037
CmaCh09G009290	Carg12798	Silver-seed gourd	carcmaB1240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G009290	Silver-seed gourd	carcmaB1407
CmaCh09G009290	Cucumber (Chinese Long) v3	cmacucB0026
CmaCh09G009290	Cucumber (Chinese Long) v3	cmacucB0045
CmaCh09G009290	Watermelon (97103) v2	cmawmbB018
CmaCh09G009290	Cucurbita maxima (Rimu)	cmacmaB038
CmaCh09G009290	Cucurbita maxima (Rimu)	cmacmaB041
CmaCh09G009290	Cucurbita maxima (Rimu)	cmacmaB069
CmaCh09G009290	Cucurbita maxima (Rimu)	cmacmaB052
CmaCh09G009290	Cucurbita maxima (Rimu)	cmacmaB062
CmaCh09G009290	Cucurbita moschata (Rifu)	cmacmoB048
CmaCh09G009290	Cucurbita moschata (Rifu)	cmacmoB036
CmaCh09G009290	Cucurbita moschata (Rifu)	cmacmoB039
CmaCh09G009290	Wild cucumber (PI 183967)	cmacpiB009
CmaCh09G009290	Wild cucumber (PI 183967)	cmacpiB019
CmaCh09G009290	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G009290	Bottle gourd (USVL1VR-Ls)	cmalsiB030
CmaCh09G009290	Cucumber (Gy14) v2	cgybcmaB286
CmaCh09G009290	Melon (DHL92) v3.6.1	cmamedB046