CmaCh09G006450 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G006450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP-dependent helicase/nuclease subunit A
Location	Cma_Chr09 : 3054754 .. 3055768 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTAAACACCATCAAGATCAACCTTAAAGCCTGCCTCCAACTAGATTCTTCCTTGCACTTAAAGTTAACCCCATCCTCCATATTATATGTAACCATTTTCACCCCTTTTTTAACACACATACACACACACACACACACAGGGATCGGATAGATATCTCCTTTCATTTCAGCCCTTTTCTCTCTGCAAATCCAAATGAAGAGAAAATGGGAAGACCCACAAGGAGAAACCTTCAATTCTCCCACTGATATTGAGCTCCAGCTCGAGACTCCATTACCTTTGGAGTGGCAACGATGTCTGGATATTCAGGTACTAAACTTTGTTCTCTGTTCTTCATTTTCTATATCGATAACTATATATTTATACAACTTTCTATTCCGATGGTCATCTTTTTGTTTCACAGTCAGGACAGATATATTTCTATAATACCAAGACCCAAAAGAGAACCTCAATGGATCCAAGAAGAAAATGGGAGGGTTCCAACAGTCTTGGAGGTGAGCCCTTGAGCTTGGACCTTGAGCTCAATCTGAATTGCCAATCTATCAGAAACGGTGGTCAGACAAAGAAGAAGAGCGATGGGATTATGGGTGGTGGGTTGGGGAAGGGTTTGAAACAAGGAAATGGGTGTCCTCCATGGTTAAGATTTGAAAGAGGGCAGCAGCAAGAGATGGAGGCCAGAGTTTGCATGCAGTGTCACTTATTGGTTATGCTTTTGAAGTCCTCACCCACATGCCCCAATTGCAAATTCACACACCCAATAACGGACCTACAAAGCCCTCCAACTACAACCTTCTTTATACCAAATTCTCTACCTACTAAGAGTAATCAAACCCACTCCTTAAAGAGTTTCTTCCCAAACGCTATTCAAAATCAAGTCTAATTGTGTTTTATTTATTGAGATTTATTGTTTATGTAGTGAGTTATCAGGGATGGTTAGAGGCAACCCTTTGTTTTTGGGAATATATGTAAATTATATGAGAAAGAATCATTTACATATCCATGCATGTTGTTGCAGC

mRNA sequence

CGTTAAACACCATCAAGATCAACCTTAAAGCCTGCCTCCAACTAGATTCTTCCTTGCACTTAAAGTTAACCCCATCCTCCATATTATATGTAACCATTTTCACCCCTTTTTTAACACACATACACACACACACACACACAGGGATCGGATAGATATCTCCTTTCATTTCAGCCCTTTTCTCTCTGCAAATCCAAATGAAGAGAAAATGGGAAGACCCACAAGGAGAAACCTTCAATTCTCCCACTGATATTGAGCTCCAGCTCGAGACTCCATTACCTTTGGAGTGGCAACGATGTCTGGATATTCAGTCAGGACAGATATATTTCTATAATACCAAGACCCAAAAGAGAACCTCAATGGATCCAAGAAGAAAATGGGAGGGTTCCAACAGTCTTGGAGGTGAGCCCTTGAGCTTGGACCTTGAGCTCAATCTGAATTGCCAATCTATCAGAAACGGTGGTCAGACAAAGAAGAAGAGCGATGGGATTATGGGTGGTGGGTTGGGGAAGGGTTTGAAACAAGGAAATGGGTGTCCTCCATGGTTAAGATTTGAAAGAGGGCAGCAGCAAGAGATGGAGGCCAGAGTTTGCATGCAGTGTCACTTATTGGTTATGCTTTTGAAGTCCTCACCCACATGCCCCAATTGCAAATTCACACACCCAATAACGGACCTACAAAGCCCTCCAACTACAACCTTCTTTATACCAAATTCTCTACCTACTAAGAGTAATCAAACCCACTCCTTAAAGAGTTTCTTCCCAAACGCTATTCAAAATCAAGTCTAATTGTGTTTTATTTATTGAGATTTATTGTTTATGTAGTGAGTTATCAGGGATGGTTAGAGGCAACCCTTTGTTTTTGGGAATATATGTAAATTATATGAGAAAGAATCATTTACATATCCATGCATGTTGTTGCAGC

Coding sequence (CDS)

ATGAAGAGAAAATGGGAAGACCCACAAGGAGAAACCTTCAATTCTCCCACTGATATTGAGCTCCAGCTCGAGACTCCATTACCTTTGGAGTGGCAACGATGTCTGGATATTCAGTCAGGACAGATATATTTCTATAATACCAAGACCCAAAAGAGAACCTCAATGGATCCAAGAAGAAAATGGGAGGGTTCCAACAGTCTTGGAGGTGAGCCCTTGAGCTTGGACCTTGAGCTCAATCTGAATTGCCAATCTATCAGAAACGGTGGTCAGACAAAGAAGAAGAGCGATGGGATTATGGGTGGTGGGTTGGGGAAGGGTTTGAAACAAGGAAATGGGTGTCCTCCATGGTTAAGATTTGAAAGAGGGCAGCAGCAAGAGATGGAGGCCAGAGTTTGCATGCAGTGTCACTTATTGGTTATGCTTTTGAAGTCCTCACCCACATGCCCCAATTGCAAATTCACACACCCAATAACGGACCTACAAAGCCCTCCAACTACAACCTTCTTTATACCAAATTCTCTACCTACTAAGAGTAATCAAACCCACTCCTTAAAGAGTTTCTTCCCAAACGCTATTCAAAATCAAGTCTAA

Protein sequence

MKRKWEDPQGETFNSPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPRRKWEGSNSLGGEPLSLDLELNLNCQSIRNGGQTKKKSDGIMGGGLGKGLKQGNGCPPWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITDLQSPPTTTFFIPNSLPTKSNQTHSLKSFFPNAIQNQV

Homology

[Close]

BLAST of CmaCh09G006450 vs. TrEMBL
Match: A0A0A0LHX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895830 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 145/227 (63.88%), Postives = 161/227 (70.93%), Query Frame = 1


Query: 1   MKRKWEDPQGETFNSPTD-IELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPRR 60
           MKRKWEDPQG+ FNSPTD IEL LETPLPLEWQRCLDIQSG+I+F+NTKTQKRTSMDPRR
Sbjct: 1   MKRKWEDPQGDNFNSPTDNIELHLETPLPLEWQRCLDIQSGEIHFFNTKTQKRTSMDPRR 60

Query: 61  -KWEGSNSLGG--------EPLSLDLELNLNCQSIRNGGQTKKKSDGIMGGGLGKGLKQG 120
            K EG  +           + LSLDLELNLNCQS +   +    ++   GGGL K     
Sbjct: 61  NKLEGPTTTPNRSFHASDHQALSLDLELNLNCQSKK---KIMSNNNDDTGGGLLKLQANN 120

Query: 121 NGCP-PWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITD----LQSPP- 180
            G   PWLRFER +QQEM ARVCMQCHLLVMLLKSSPTCPNCKF HPITD    LQ+ P 
Sbjct: 121 YGISCPWLRFER-EQQEMVARVCMQCHLLVMLLKSSPTCPNCKFIHPITDHHQYLQNNPP 180

Query: 181 ----------TTTFFIPNSLPTKSN-----QTHSLKSFFPNAIQNQV 197
                     TTTFF+PNSLPT++N     QT SLKSFFPN IQN+V
Sbjct: 181 TTTTTTTTATTTTFFLPNSLPTENNNNHHHQTESLKSFFPNPIQNKV 223

[Close]

BLAST of CmaCh09G006450 vs. TrEMBL
Match: V4T724_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002416mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.5e-36
Identity = 94/165 (56.97%), Postives = 107/165 (64.85%), Query Frame = 1


Query: 12  TFNSPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPRRKWEGSNSLGGEP 71
           T +S  DIELQLETPLPLEW+RCLDIQSG+I+FYNT+T K+TS DPR   E  N   G+ 
Sbjct: 48  TKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNR-AGDH 107

Query: 72  LSLDLELNLNCQSIR-----NGGQTKKKSDGIMGGGLGKGLKQGNG-----CPPWLRFE- 131
           +SLDLELNL C S R     N   +K  S       LG  LK+ +G     CP WL FE 
Sbjct: 108 MSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEG 167

Query: 132 -RGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITDLQSPP 165
               QQEM A  CM+CH+LVML KSSPTCPNCKF HP    QSPP
Sbjct: 168 DHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPD--QSPP 209

[Close]

BLAST of CmaCh09G006450 vs. TrEMBL
Match: A0A067GQI6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027645mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.5e-36
Identity = 94/165 (56.97%), Postives = 107/165 (64.85%), Query Frame = 1


Query: 12  TFNSPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPRRKWEGSNSLGGEP 71
           T +S  DIELQLETPLPLEW+RCLDIQSG+I+FYNT+T K+TS DPR   E  N   G+ 
Sbjct: 48  TKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNR-AGDH 107

Query: 72  LSLDLELNLNCQSIR-----NGGQTKKKSDGIMGGGLGKGLKQGNG-----CPPWLRFE- 131
           +SLDLELNL C S R     N   +K  S       LG  LK+ +G     CP WL FE 
Sbjct: 108 MSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEG 167

Query: 132 -RGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITDLQSPP 165
               QQEM A  CM+CH+LVML KSSPTCPNCKF HP    QSPP
Sbjct: 168 DHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPD--QSPP 209

[Close]

BLAST of CmaCh09G006450 vs. TrEMBL
Match: E0CRK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05580 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 96/186 (51.61%), Postives = 110/186 (59.14%), Query Frame = 1


Query: 2   KRKWE----------DPQGETFNSPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQK 61
           KRKWE            + ++  S  DIELQLETPLPLEWQRCLDIQSGQI+FYNT+T K
Sbjct: 26  KRKWEKTGTEEVFKLQSKAKSTKSIFDIELQLETPLPLEWQRCLDIQSGQIHFYNTRTHK 85

Query: 62  RTSMDPRRKWEGSNSLGGEPLSLDLELNLNCQSIRNGGQTKKKSDGIMG----------- 121
           RTS DPR   E  +     P+SL+LELNL C S+R     + + D  MG           
Sbjct: 86  RTSRDPRASPEPPSP---GPMSLELELNLPCDSLR-----RNRPDDNMGKWNSGSPSHNS 145

Query: 122 -GGLGKGLKQGNGC-PPWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPIT 165
              L K    G  C P WL FE G  QEM A VC +CH+LVML KSSPTCPNCKF HP  
Sbjct: 146 KESLQKKNPGGVACSPSWLAFE-GDNQEMVAAVCKRCHMLVMLCKSSPTCPNCKFMHPPD 200

[Close]

BLAST of CmaCh09G006450 vs. TrEMBL
Match: B9GUV5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09660g PE=4 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 98/187 (52.41%), Postives = 113/187 (60.43%), Query Frame = 1


Query: 2   KRKWEDPQGETF----------NSPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQK 61
           KRKWEDPQ E             S  +IEL LETPLPLEWQRCLDIQSGQI+FYNT+T K
Sbjct: 25  KRKWEDPQTEGILEKRSNPESRKSFFEIELHLETPLPLEWQRCLDIQSGQIHFYNTRTHK 84

Query: 62  RTSMDPRRKWEGSNSLGGEPLSLDLELNL-----NCQSIRNGGQTKKKSDG-IMG-GGLG 121
           RTS DPR   E  +      +SL+LELNL       +S  +   TK+   G I G G L 
Sbjct: 85  RTSRDPRGSPEPPSP--DHDMSLELELNLPYDQSQRKSYTHDHITKQNPGGSIRGFGDLF 144

Query: 122 KGLKQGNGC-------PPWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPI 165
           K   + NG        P WL FE+  QQEM A VC +CH+LVML +SSPTCPNCKF HP+
Sbjct: 145 KESSRDNGSSGGLTRRPSWLAFEK-DQQEMLATVCTKCHMLVMLCRSSPTCPNCKFLHPL 204

[Close]

BLAST of CmaCh09G006450 vs. TAIR10
Match: AT1G78170.1 (AT1G78170.1 unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-13
Identity = 65/188 (34.57%), Postives = 85/188 (45.21%), Query Frame = 1


Query: 6   EDPQGETFNSPT-DIELQLETPLPLEWQRCLDIQSGQIYFYNTKT-----QKRTSMDPRR 65
           E P+ E+  S T D EL L TPLP +WQ     ++   +    K      Q + S+D   
Sbjct: 43  ERPKSESMRSITFDFELHLHTPLPSDWQTKGYSRTSDEHRAYPKDPVIFGQPKMSLDLEL 102

Query: 66  KWEGSNSLGG------EPLSLDLELNLNCQSIRNGGQTKKKSDGIMGGGLGKGLKQGNGC 125
               S S         E  S+  E  ++   I+    T KKS  I+G GL +        
Sbjct: 103 NLSPSGSPSRTTTKKYESSSIHNE-TVSSSKIKVLTNTSKKS--IIGTGLSRS------- 162

Query: 126 PPWLRFERGQQ-------QEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITDLQSPPTT 175
           P WL FE G         QEM   VCM+CH+LVML  S+P CPNCKF HP        +T
Sbjct: 163 PSWLAFEGGDDNDVDHKGQEMVTTVCMKCHMLVMLCTSTPVCPNCKFMHP----HDHSST 216

[Close]

BLAST of CmaCh09G006450 vs. TAIR10
Match: AT1G22250.1 (AT1G22250.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-09
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1


Query: 74  LDLELNLNCQSIRNGGQTKKKSDGIMGGGL-----GKGLKQGN----GCPPWLRFE---- 133
           LDL LNL   S  +  +T  + D    GG       K ++ G+      P WL FE    
Sbjct: 85  LDLNLNLYSSSSSSVKKTIMEKDECSKGGTVIISPSKKVRSGDIGLSRSPSWLAFEGDDD 144

Query: 134 -RGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTH 156
              ++QEM   VCM+CH+LVML KS+  CPNCKF H
Sbjct: 145 DNQKKQEMITTVCMKCHMLVMLCKSTLVCPNCKFMH 180

[Close]

BLAST of CmaCh09G006450 vs. TAIR10
Match: AT4G08910.1 (AT4G08910.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 8.9e-09
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1


Query: 124 QQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITD 160
           ++EM ARVCM+CH+LVML K+SP CPNCKF H   D
Sbjct: 162 EEEMVARVCMKCHMLVMLCKASPACPNCKFMHSPED 197

[Close]

BLAST of CmaCh09G006450 vs. NCBI nr
Match: gi|449436864|ref|XP_004136212.1| (PREDICTED: uncharacterized protein LOC101215652 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 2.2e-62
Identity = 145/227 (63.88%), Postives = 161/227 (70.93%), Query Frame = 1


Query: 1   MKRKWEDPQGETFNSPTD-IELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPRR 60
           MKRKWEDPQG+ FNSPTD IEL LETPLPLEWQRCLDIQSG+I+F+NTKTQKRTSMDPRR
Sbjct: 1   MKRKWEDPQGDNFNSPTDNIELHLETPLPLEWQRCLDIQSGEIHFFNTKTQKRTSMDPRR 60

Query: 61  -KWEGSNSLGG--------EPLSLDLELNLNCQSIRNGGQTKKKSDGIMGGGLGKGLKQG 120
            K EG  +           + LSLDLELNLNCQS +   +    ++   GGGL K     
Sbjct: 61  NKLEGPTTTPNRSFHASDHQALSLDLELNLNCQSKK---KIMSNNNDDTGGGLLKLQANN 120

Query: 121 NGCP-PWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITD----LQSPP- 180
            G   PWLRFER +QQEM ARVCMQCHLLVMLLKSSPTCPNCKF HPITD    LQ+ P 
Sbjct: 121 YGISCPWLRFER-EQQEMVARVCMQCHLLVMLLKSSPTCPNCKFIHPITDHHQYLQNNPP 180

Query: 181 ----------TTTFFIPNSLPTKSN-----QTHSLKSFFPNAIQNQV 197
                     TTTFF+PNSLPT++N     QT SLKSFFPN IQN+V
Sbjct: 181 TTTTTTTTATTTTFFLPNSLPTENNNNHHHQTESLKSFFPNPIQNKV 223

[Close]

BLAST of CmaCh09G006450 vs. NCBI nr
Match: gi|659132132|ref|XP_008466035.1| (PREDICTED: uncharacterized protein LOC103503587 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.5e-61
Identity = 147/221 (66.52%), Postives = 160/221 (72.40%), Query Frame = 1


Query: 1   MKRKWEDPQGETFNSPTD-IELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPRR 60
           MKRKWEDPQGE FNSPTD IEL LETPLPLEWQRCLDIQSG+I+F+NTKTQKRTSMDPRR
Sbjct: 83  MKRKWEDPQGENFNSPTDNIELHLETPLPLEWQRCLDIQSGEIHFFNTKTQKRTSMDPRR 142

Query: 61  -KWEG-------SNSLGGEPLSLDLELNLNCQSIRNGGQTKKKSDGIMGGGLGKGLKQGN 120
            K EG       S+    + LSLDLELNLNCQS  N       +D    GGL K      
Sbjct: 143 NKLEGPTTTPSRSHVSDHQALSLDLELNLNCQS--NKKILSNNNDDT--GGLMKLQANNY 202

Query: 121 GCP-PWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITD----LQSPP-- 180
           G   PWLRFER +QQEM ARVCMQCHLLVMLLKSSPTCPNCKF HPITD    LQ+ P  
Sbjct: 203 GISCPWLRFER-EQQEMVARVCMQCHLLVMLLKSSPTCPNCKFIHPITDHHQYLQNNPPT 262

Query: 181 ----TTTFFIPNSLPTKS-----NQTHSLKSFFPNAIQNQV 197
               TTTFF+PNSLPT++     +QT SLKSFFPN IQN+V
Sbjct: 263 TTTTTTTFFLPNSLPTENDNNHHHQTESLKSFFPNPIQNKV 298

[Close]

BLAST of CmaCh09G006450 vs. NCBI nr
Match: gi|567882873|ref|XP_006433995.1| (hypothetical protein CICLE_v10002416mg [Citrus clementina])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 94/165 (56.97%), Postives = 107/165 (64.85%), Query Frame = 1


Query: 12  TFNSPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPRRKWEGSNSLGGEP 71
           T +S  DIELQLETPLPLEW+RCLDIQSG+I+FYNT+T K+TS DPR   E  N   G+ 
Sbjct: 48  TKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNR-AGDH 107

Query: 72  LSLDLELNLNCQSIR-----NGGQTKKKSDGIMGGGLGKGLKQGNG-----CPPWLRFE- 131
           +SLDLELNL C S R     N   +K  S       LG  LK+ +G     CP WL FE 
Sbjct: 108 MSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEG 167

Query: 132 -RGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITDLQSPP 165
               QQEM A  CM+CH+LVML KSSPTCPNCKF HP    QSPP
Sbjct: 168 DHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPD--QSPP 209

[Close]

BLAST of CmaCh09G006450 vs. NCBI nr
Match: gi|568837188|ref|XP_006472611.1| (PREDICTED: uncharacterized protein LOC102608787 [Citrus sinensis])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 94/165 (56.97%), Postives = 107/165 (64.85%), Query Frame = 1


Query: 12  TFNSPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPRRKWEGSNSLGGEP 71
           T +S  DIELQLETPLPLEW+RCLDIQSG+I+FYNT+T K+TS DPR   E  N   G+ 
Sbjct: 48  TKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNR-AGDH 107

Query: 72  LSLDLELNLNCQSIR-----NGGQTKKKSDGIMGGGLGKGLKQGNG-----CPPWLRFE- 131
           +SLDLELNL C S R     N   +K  S       LG  LK+ +G     CP WL FE 
Sbjct: 108 MSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEG 167

Query: 132 -RGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITDLQSPP 165
               QQEM A  CM+CH+LVML KSSPTCPNCKF HP    QSPP
Sbjct: 168 DHDDQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPD--QSPP 209

[Close]

BLAST of CmaCh09G006450 vs. NCBI nr
Match: gi|225459312|ref|XP_002284166.1| (PREDICTED: uncharacterized protein LOC100262645 [Vitis vinifera])

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 96/186 (51.61%), Postives = 110/186 (59.14%), Query Frame = 1


Query: 2   KRKWE----------DPQGETFNSPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQK 61
           KRKWE            + ++  S  DIELQLETPLPLEWQRCLDIQSGQI+FYNT+T K
Sbjct: 26  KRKWEKTGTEEVFKLQSKAKSTKSIFDIELQLETPLPLEWQRCLDIQSGQIHFYNTRTHK 85

Query: 62  RTSMDPRRKWEGSNSLGGEPLSLDLELNLNCQSIRNGGQTKKKSDGIMG----------- 121
           RTS DPR   E  +     P+SL+LELNL C S+R     + + D  MG           
Sbjct: 86  RTSRDPRASPEPPSP---GPMSLELELNLPCDSLR-----RNRPDDNMGKWNSGSPSHNS 145

Query: 122 -GGLGKGLKQGNGC-PPWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPIT 165
              L K    G  C P WL FE G  QEM A VC +CH+LVML KSSPTCPNCKF HP  
Sbjct: 146 KESLQKKNPGGVACSPSWLAFE-GDNQEMVAAVCKRCHMLVMLCKSSPTCPNCKFMHPPD 200

The following BLAST results are available for this feature:

BLAST of CmaCh09G006450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G006450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHX2_CUCSA	1.6e-62	63.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895830 PE=4 SV=1	[more]
V4T724_9ROSI	9.5e-36	56.97	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002416mg PE=4 SV=1	[more]
A0A067GQI6_CITSI	9.5e-36	56.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027645mg PE=4 SV=1	[more]
E0CRK2_VITVI	1.4e-34	51.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05580 PE=4 SV=...	[more]
B9GUV5_POPTR	1.2e-33	52.41	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09660g PE=4 SV=2	[more]

BLAST of CmaCh09G006450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78170.1	3.5e-13	34.57	unknown protein	[more]
AT1G22250.1	2.3e-09	40.63	unknown protein	[more]
AT4G08910.1	8.9e-09	66.67	unknown protein	[more]

BLAST of CmaCh09G006450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436864\|ref\|XP_004136212.1\|	2.2e-62	63.88	PREDICTED: uncharacterized protein LOC101215652 [Cucumis sativus]	[more]
gi\|659132132\|ref\|XP_008466035.1\|	1.5e-61	66.52	PREDICTED: uncharacterized protein LOC103503587 [Cucumis melo]	[more]
gi\|567882873\|ref\|XP_006433995.1\|	1.4e-35	56.97	hypothetical protein CICLE_v10002416mg [Citrus clementina]	[more]
gi\|568837188\|ref\|XP_006472611.1\|	1.4e-35	56.97	PREDICTED: uncharacterized protein LOC102608787 [Citrus sinensis]	[more]
gi\|225459312\|ref\|XP_002284166.1\|	2.0e-34	51.61	PREDICTED: uncharacterized protein LOC100262645 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G006450.1	CmaCh09G006450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	PROFILE	PS50020	WW_DOMAIN_2	coord: 25..59 score: 9
IPR001202	WW domain	unknown	SSF51045	WW domain	coord: 25..59 score: 7.0
None	No IPR available	GENE3D	G3DSA:2.20.70.10		coord: 24..60 score: 6.
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 9..164 score: 2.4
None	No IPR available	PANTHER	PTHR14791:SF28	SUBFAMILY NOT NAMED	coord: 9..164 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G006450	Cucsa.312690	Cucumber (Gy14) v1	cgycmaB0854
CmaCh09G006450	Csa3G895830	Cucumber (Chinese Long) v2	cmacuB014
CmaCh09G006450	MELO3C003450	Melon (DHL92) v3.5.1	cmameB034
CmaCh09G006450	ClCG11G015290	Watermelon (Charleston Gray)	cmawcgB014
CmaCh09G006450	CSPI03G46260	Wild cucumber (PI 183967)	cmacpiB014
CmaCh09G006450	CmoCh01G014750	Cucurbita moschata (Rifu)	cmacmoB049
CmaCh09G006450	CmoCh09G006280	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G006450	Lsi04G023440	Bottle gourd (USVL1VR-Ls)	cmalsiB022
CmaCh09G006450	Cp4.1LG06g05100	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G006450	MELO3C003450.2	Melon (DHL92) v3.6.1	cmamedB033
CmaCh09G006450	CsaV3_3G048710	Cucumber (Chinese Long) v3	cmacucB0021
CmaCh09G006450	Cla97C11G221320	Watermelon (97103) v2	cmawmbB019
CmaCh09G006450	Bhi09G002191	Wax gourd	cmawgoB0026
CmaCh09G006450	CsGy3G043730	Cucumber (Gy14) v2	cgybcmaB285
CmaCh09G006450	Carg00371	Silver-seed gourd	carcmaB0934
CmaCh09G006450	Carg03055	Silver-seed gourd	carcmaB0889

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh09G006450	CmaCh01G014270	Cucurbita maxima (Rimu)	cmacmaB053

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G006450	Watermelon (97103) v1	cmawmB036
CmaCh09G006450	Cucurbita pepo (Zucchini)	cmacpeB047