CmaCh09G001070 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G001070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_26
Location	Cma_Chr09 : 469987 .. 470208 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCTTTCATCGAATCCGTAAGATACTCGTTCGCTTCGTGTTCTCGCTCCCGTCTCGCGTGCCGTCGAGACAAAGAACAACCTACGACAAGTTGTATGATCCCCCGAAAACGTCATGCAGCTCCTATTACTCTTCGCACTCCCACTACGATGAGGCCATTGCTGATTGTATCGAGTTCTTCAACAAATCGTCCCAAGATCCAAACACTTTGGTATAA

mRNA sequence

ATGAAGCTCTTTCATCGAATCCGTAAGATACTCGTTCGCTTCGTGTTCTCGCTCCCGTCTCGCGTGCCGTCGAGACAAAGAACAACCTACGACAAGTTGTATGATCCCCCGAAAACGTCATGCAGCTCCTATTACTCTTCGCACTCCCACTACGATGAGGCCATTGCTGATTGTATCGAGTTCTTCAACAAATCGTCCCAAGATCCAAACACTTTGGTATAA

Coding sequence (CDS)

ATGAAGCTCTTTCATCGAATCCGTAAGATACTCGTTCGCTTCGTGTTCTCGCTCCCGTCTCGCGTGCCGTCGAGACAAAGAACAACCTACGACAAGTTGTATGATCCCCCGAAAACGTCATGCAGCTCCTATTACTCTTCGCACTCCCACTACGATGAGGCCATTGCTGATTGTATCGAGTTCTTCAACAAATCGTCCCAAGATCCAAACACTTTGGTATAA

Protein sequence

MKLFHRIRKILVRFVFSLPSRVPSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDPNTLV

Homology

[Close]

BLAST of CmaCh09G001070 vs. TrEMBL
Match: A0A0A0LDK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872120 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-24
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1


Query: 1  MKLFHRIRKILVRFVFSLPSRVPS--RQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADC 60
          MKLF RIRK+LVRFVFS+PSRV S  R+RT+YDK +DPPKTSCSSYYSSHSHYDEAIADC
Sbjct: 29 MKLFQRIRKMLVRFVFSIPSRVSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADC 88

Query: 61 IEFFNKSSQD 69
          IEFFNKSSQD
Sbjct: 89 IEFFNKSSQD 98

[Close]

BLAST of CmaCh09G001070 vs. TrEMBL
Match: A0A151TCL3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_019371 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-18
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 1  MKLFHRIRKILVRFVFSLPSRVPSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
          MKLF R RKIL+RFVFS+PSR  S  R      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 1  MKLFQRFRKILMRFVFSVPSRRSSDSRHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 60

Query: 61 FFNKSSQD 69
          FFNKS+QD
Sbjct: 61 FFNKSAQD 68

[Close]

BLAST of CmaCh09G001070 vs. TrEMBL
Match: A0A0S3RAZ7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G028200 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-17
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 1   MKLFHRIRKILVRFVFSLPSRVPSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
           MKLF R RKI +RFVFS+PSR     +      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 43  MKLFQRFRKIFMRFVFSVPSRRSKDSKHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 102

Query: 61  FFNKSSQD 69
           FFNKS+QD
Sbjct: 103 FFNKSAQD 110

[Close]

BLAST of CmaCh09G001070 vs. TrEMBL
Match: A0A0L9VAG4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g031300 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-17
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 1   MKLFHRIRKILVRFVFSLPSRVPSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
           MKLF R RKI +RFVFS+PSR     +      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 43  MKLFQRFRKIFMRFVFSVPSRRSKDSKHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 102

Query: 61  FFNKSSQD 69
           FFNKS+QD
Sbjct: 103 FFNKSAQD 110

[Close]

BLAST of CmaCh09G001070 vs. TrEMBL
Match: W9RNU3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016044 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.3e-17
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 1  MKLFHRIRKILVRFVFSLPSRVPSRQ------RTTYDKLYDPPKTSCSSYYSSHSHYDEA 60
          MKLF+R RK+L+RF+FSLPSR  S        R      ++PPKTSCSSYYSSHSHY+EA
Sbjct: 1  MKLFNRFRKLLMRFIFSLPSRRSSSATQGMTPRHRNSDRFEPPKTSCSSYYSSHSHYNEA 60

Query: 61 IADCIEFFNKSSQD 69
          IADCIEFFNKSSQ+
Sbjct: 61 IADCIEFFNKSSQE 74

[Close]

BLAST of CmaCh09G001070 vs. TAIR10
Match: AT1G75717.1 (AT1G75717.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-13
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MKLFHRIRKILVRFV-FSLPS----RVPSRQRTTYDKLYDPPKTSCSS-YYSSHSHYDEA 60
          MKLFH++ KIL+R + F+L S    +  +  R+   + ++PPK SCSS YYSSH HY EA
Sbjct: 1  MKLFHKLGKILMRLIDFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSEA 60

Query: 61 IADCIEFFNKSS 67
          IADCIEFFNKSS
Sbjct: 61 IADCIEFFNKSS 72

[Close]

BLAST of CmaCh09G001070 vs. NCBI nr
Match: gi|700204897|gb|KGN60030.1| (hypothetical protein Csa_3G872120 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-24
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1


Query: 1  MKLFHRIRKILVRFVFSLPSRVPS--RQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADC 60
          MKLF RIRK+LVRFVFS+PSRV S  R+RT+YDK +DPPKTSCSSYYSSHSHYDEAIADC
Sbjct: 29 MKLFQRIRKMLVRFVFSIPSRVSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADC 88

Query: 61 IEFFNKSSQD 69
          IEFFNKSSQD
Sbjct: 89 IEFFNKSSQD 98

[Close]

BLAST of CmaCh09G001070 vs. NCBI nr
Match: gi|1012353577|gb|KYP64765.1| (hypothetical protein KK1_019371 [Cajanus cajan])

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-18
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 1  MKLFHRIRKILVRFVFSLPSRVPSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
          MKLF R RKIL+RFVFS+PSR  S  R      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 1  MKLFQRFRKILMRFVFSVPSRRSSDSRHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 60

Query: 61 FFNKSSQD 69
          FFNKS+QD
Sbjct: 61 FFNKSAQD 68

[Close]

BLAST of CmaCh09G001070 vs. NCBI nr
Match: gi|920710405|gb|KOM51654.1| (hypothetical protein LR48_Vigan09g031300 [Vigna angularis])

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-17
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 1   MKLFHRIRKILVRFVFSLPSRVPSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60
           MKLF R RKI +RFVFS+PSR     +      ++PPKTSCSSYYSS+SHY+EAIADCIE
Sbjct: 43  MKLFQRFRKIFMRFVFSVPSRRSKDSKHKVSDRFEPPKTSCSSYYSSYSHYNEAIADCIE 102

Query: 61  FFNKSSQD 69
           FFNKS+QD
Sbjct: 103 FFNKSAQD 110

[Close]

BLAST of CmaCh09G001070 vs. NCBI nr
Match: gi|1009179595|ref|XP_015871165.1| (PREDICTED: uncharacterized protein LOC107408298 [Ziziphus jujuba])

HSP 1 Score: 94.4 bits (233), Expect = 9.0e-17
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1  MKLFHRIRKILVRFVFSLPSR-------------VPSRQRTTYDKLYDPPKTSCSSYYSS 60
          MKLF+R RKIL+R +FSLP R             +  RQR   D+ +DPPKTSCSSYYSS
Sbjct: 1  MKLFNRFRKILMRLIFSLPPRGSCSSSSSSATPGMTPRQRNC-DRSFDPPKTSCSSYYSS 60

Query: 61 HSHYDEAIADCIEFFNKSSQD 69
          HSHY+EAIADCIEFFNKSSQ+
Sbjct: 61 HSHYNEAIADCIEFFNKSSQE 80

[Close]

BLAST of CmaCh09G001070 vs. NCBI nr
Match: gi|703129774|ref|XP_010104445.1| (hypothetical protein L484_016044 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 9.0e-17
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 1  MKLFHRIRKILVRFVFSLPSRVPSRQ------RTTYDKLYDPPKTSCSSYYSSHSHYDEA 60
          MKLF+R RK+L+RF+FSLPSR  S        R      ++PPKTSCSSYYSSHSHY+EA
Sbjct: 1  MKLFNRFRKLLMRFIFSLPSRRSSSATQGMTPRHRNSDRFEPPKTSCSSYYSSHSHYNEA 60

Query: 61 IADCIEFFNKSSQD 69
          IADCIEFFNKSSQ+
Sbjct: 61 IADCIEFFNKSSQE 74

The following BLAST results are available for this feature:

BLAST of CmaCh09G001070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G001070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDK4_CUCSA	1.4e-24	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872120 PE=4 SV=1	[more]
A0A151TCL3_CAJCA	2.6e-18	72.06	Uncharacterized protein OS=Cajanus cajan GN=KK1_019371 PE=4 SV=1	[more]
A0A0S3RAZ7_PHAAN	4.8e-17	67.65	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G028200 PE=...	[more]
A0A0L9VAG4_PHAAN	4.8e-17	67.65	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g031300 PE=4 SV=1	[more]
W9RNU3_9ROSA	6.3e-17	66.22	Uncharacterized protein OS=Morus notabilis GN=L484_016044 PE=4 SV=1	[more]

BLAST of CmaCh09G001070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75717.1	3.8e-13	56.94	unknown protein	[more]

BLAST of CmaCh09G001070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204897\|gb\|KGN60030.1\|	2.0e-24	85.71	hypothetical protein Csa_3G872120 [Cucumis sativus]	[more]
gi\|1012353577\|gb\|KYP64765.1\|	3.7e-18	72.06	hypothetical protein KK1_019371 [Cajanus cajan]	[more]
gi\|920710405\|gb\|KOM51654.1\|	6.9e-17	67.65	hypothetical protein LR48_Vigan09g031300 [Vigna angularis]	[more]
gi\|1009179595\|ref\|XP_015871165.1\|	9.0e-17	62.96	PREDICTED: uncharacterized protein LOC107408298 [Ziziphus jujuba]	[more]
gi\|703129774\|ref\|XP_010104445.1\|	9.0e-17	66.22	hypothetical protein L484_016044 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G001070.1	CmaCh09G001070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111	FAMILY NOT NAMED	coord: 1..72 score: 1.8
None	No IPR available	PANTHER	PTHR35111:SF2	F10A5.9	coord: 1..72 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G001070	Cla020832	Watermelon (97103) v1	cmawmB026
CmaCh09G001070	ClCG05G018320	Watermelon (Charleston Gray)	cmawcgB021
CmaCh09G001070	CmoCh09G001030	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G001070	Lsi04G017400	Bottle gourd (USVL1VR-Ls)	cmalsiB024
CmaCh09G001070	Cp4.1LG06g00690	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G001070	Cp4.1LG02g07930	Cucurbita pepo (Zucchini)	cmacpeB045
CmaCh09G001070	CsaV3_2G029470	Cucumber (Chinese Long) v3	cmacucB0015
CmaCh09G001070	CsaV3_3G045820	Cucumber (Chinese Long) v3	cmacucB0024
CmaCh09G001070	Cla97C05G099650	Watermelon (97103) v2	cmawmbB026
CmaCh09G001070	Bhi09G001791	Wax gourd	cmawgoB0030
CmaCh09G001070	Carg08681	Silver-seed gourd	carcmaB0134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G001070	Cucumber (Chinese Long) v3	cmacucB0042
CmaCh09G001070	Watermelon (97103) v2	cmawmbB015
CmaCh09G001070	Watermelon (97103) v2	cmawmbB035
CmaCh09G001070	Cucurbita maxima (Rimu)	cmacmaB034
CmaCh09G001070	Cucurbita maxima (Rimu)	cmacmaB051
CmaCh09G001070	Cucurbita maxima (Rimu)	cmacmaB061
CmaCh09G001070	Cucurbita maxima (Rimu)	cmacmaB070
CmaCh09G001070	Cucurbita maxima (Rimu)	cmacmaB067
CmaCh09G001070	Cucumber (Gy14) v1	cgycmaB0920
CmaCh09G001070	Cucurbita moschata (Rifu)	cmacmoB032
CmaCh09G001070	Cucurbita moschata (Rifu)	cmacmoB047
CmaCh09G001070	Cucurbita moschata (Rifu)	cmacmoB057
CmaCh09G001070	Cucurbita moschata (Rifu)	cmacmoB064
CmaCh09G001070	Wild cucumber (PI 183967)	cmacpiB011
CmaCh09G001070	Wild cucumber (PI 183967)	cmacpiB017
CmaCh09G001070	Cucumber (Chinese Long) v2	cmacuB011
CmaCh09G001070	Cucumber (Chinese Long) v2	cmacuB017
CmaCh09G001070	Melon (DHL92) v3.5.1	cmameB023
CmaCh09G001070	Melon (DHL92) v3.5.1	cmameB032
CmaCh09G001070	Watermelon (Charleston Gray)	cmawcgB029
CmaCh09G001070	Watermelon (97103) v1	cmawmB014
CmaCh09G001070	Cucurbita pepo (Zucchini)	cmacpeB036
CmaCh09G001070	Cucurbita pepo (Zucchini)	cmacpeB030
CmaCh09G001070	Cucurbita pepo (Zucchini)	cmacpeB043
CmaCh09G001070	Cucurbita pepo (Zucchini)	cmacpeB065
CmaCh09G001070	Bottle gourd (USVL1VR-Ls)	cmalsiB013
CmaCh09G001070	Bottle gourd (USVL1VR-Ls)	cmalsiB032
CmaCh09G001070	Cucumber (Gy14) v2	cgybcmaB147
CmaCh09G001070	Cucumber (Gy14) v2	cgybcmaB287
CmaCh09G001070	Melon (DHL92) v3.6.1	cmamedB024
CmaCh09G001070	Melon (DHL92) v3.6.1	cmamedB031
CmaCh09G001070	Melon (DHL92) v3.6.1	cmamedB048
CmaCh09G001070	Silver-seed gourd	carcmaB1291
CmaCh09G001070	Silver-seed gourd	carcmaB1345