CmaCh08G011920 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G011920
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLow-density lipoprotein receptor-related
LocationCma_Chr08 : 7330478 .. 7335682 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCGAACCATGTCAACTGCATAGCGGGAATCTCTAAGCTCTGGTAGATCACAGTTTTTCTCGCTCTCTCTCTCTCTTTCTCTCTGTTTCTTTCTGCAAGACAAAGCCACCGGAAGCAATGGCGTCGTCGGCCGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTTAAAGAAGGTGCGTTTAATTTGATGTTAAATTTGTATGTTTATGCTCGCCGGTGATTTGAAATGGAGTTTCAATTCTTTGTGTTGGACCTGCATTTCAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGAAAATCTCAGTTATTTGAATTGTGATTAGTCCTGAGAATTGAATGGTTTCATATGCATTAGTAAAGATAAATCAACGGATCTGGTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTGTCGTAATAAAGTGATATAATGACTGAAGTAGCAACTATTGAATTAATTTAGTTAAATGAAGGTAATGAAGGGTAAAGAAACCGTAATGCTTCAGCGTTCAGCCTTCAGTGTTGACACTATGCATTATTAGTCACTCGGATATTGTGTATAGTGATATTTGTACCTGAGACGTGGTGAACCACTACTTCGTAAAGACTTATTCTTACACAAACAAAAAAGAGGAAGAAGATATAACAAGTTTTTAATCTGGCCTTCCCTCTGAACAGATCCAGATATGTATCTTACATGAGCGACCTTGGCTGATATTGTGAACGAGTATTTATAATTTAAGACAAAAAATATGGTTGAGGTGGAAATGCGTACATAAGATGACAAGAACTGAAGATGGCAGTGGTAGCTTGTGATAGTTTTTGTTACTATGACTTGCTAGTTGGACATTTAGTGCTGATAGAGAAATTCCAAACAAACTCGACTAGTTGAAGTATAATGGAGTAGGCTTCAATAAGCAAATTTTAGAAAATGACATATCTTTGGAACTGTCTAGATAGAACAGAAGACTTTGTGGCACTGTAGTTGACCATAGAAAGAAACCCATTCTGCCCTACTGTCTTGTAATCACGCTTAATTGCTGCTACTCACAAGCTCAAGTGCAGCGAACATGACAAATCTCACTTGCAATAAGTTATTGCCCTCGTGCAAATAATTTATTTTTTCCTGTTATTTATTTTGTGGTAATTCCTTAGTATGAAATAAGTGGTTACCTCTGTCCCAAGTCTTTGAATGTAACTTGTATACCTTCCTCATCTCATCCTTGTAAACATGAGAAGGGAGAGAAGGAAGGATTGTTGCAGAATATTTGAGCATATTGATATGATAATCGTGTCTACAAACTTCTAAGTTTGATGTAACATAGTGTTTTCTAGGAAGTTTCACATTGAAATTCATTGTACTAAGTCTAGACACTTTTCCCCAATCAAGGTACAAGGAAACCTCTGATCCAAGACTTGACGCATTATATGATCCTTGTAGTTAATCAACCCTGTAGCTATGGTAAAGGGTGACTTGTAAATTTCAGAATTAGGATTTTGAATGAGTGAACTAGCTATAATATCTTGGCTTCTAGGGGAAATAGAAGCATTTTGACAATCCTTAGCTCTCTGGAGTCTGAATTGGTTGAGTTGAACAGCTCAAAATCTTTGCATTCTATTGTTCCCCTCCAAGATAACCTAATCTTACAAATCTTCATGCTAGCTGAAAAATATGGACTGCCACTAGAATATGATAAATTTCCAAATTCCACCTTGATATTAAACATAAGAATATCACACATATAATTGTCTCCGTCCCACTCTACATCGAAAAAACCAGAGGAGACTCTAAACTATTAGCAGTTCCTGCAGTTCATCTAAATATTAACCCAAAATAAGCTTAAATGGGATAACATACATCATGAATTGTCAACTACATAGTTCCTCGTTTTATGACAACTTGGAACGAATTATGTTGATCAGTATTGCTGGGGAAAACAAAATTAAACCAAATATAGAATAGCAAACTTGCTTGATGTTACAATCTGCTACTTCAAACATCACCTTCCTTTTCCAACCTTCTGAAAGCTTTTGCTTCTTCTGTCACAAAGTGGTGCATTCTCATCTCGAGGCTTCTCCCTTTCTTTACACTTTGCGTGTGAAAAATTGTTTATATTAATTTTCTTATTGTTCATGTATGGAAAATAGAGATAAATGTGGAGATTTCAGTGGCAGGACTTCCATTACCTCATCTTAGAAAACTTATTGCCAACTTCTGAATGTTTGTATGTATCTGAGTATACCATTATGTTTCGTTTAACTCATGTTTTTATGATTTCTATGTTAGATTAGGACAAGTGGTAGGGGGAAAAAGAACCATTTAAAAAAGTGTGCAAGAAATATTTCTTTGAAATCCTGGCTATGAGCTATTTATAGAAGTCCATTGACAATTCTTAAATTTCCACGTAAATCATTAAGTATTTCTGACACCGAGTTGCCTTATGACAATTCTTTACAAATATCCATGCGGAATAGCTGCACTCAGACACAACTGGTAGAGCTTTTTCTTACCTTTAAAACCAACATGAAAAGAAGAGTCCTCAAATATTTAAAATCACATGCCAAGACAAGTCTTGTTCACAATGTGGAATTCCATTGGAATCTTTAAATACAACCATTTTATAACATTGACATTACCCAGGAAAGTGGCATGGTTTAGAAAATACTTCCTCAGCAGTAAACATTCACACAGGTCTCATCAAATAGAAGAACAGTAATTTCGCAAGGACCTCCGAGAAAACAAAAAGAAAAATAACATTCCCGTCAACTCTAATAACAAGTACTCCAGAAGTATTCTCTAGCCTTTTGTGGATATCAGCAGACTTAGAATAGCAATTCTTTTGTAGGGATTGACCCACCAGCAGCCACAATTTGTTGCTCCATCTGCAATTAACAGATAAAACCTTTAGAAATTAAGAAGGATCTGCTAGCTTTTAAAACAGCAGTCTTATGTACTGACCCTGAATAGATTCTCAAACTTGTTTTTCACCAGGCAGGTCTCTTGCTTTAGTTGTTGCAGATATCTCAGGCACCTGCACCGAACCCAAAAATTCCCTTGTGTTTATAAGCTAATTTCATCCAATATTGCTCATATGTTGTAGGAGCTTTAATAGGAAAAACTTCTGATTTTGTTTAATAATAATACATAAATACCCTTTTTTGATAACTCGGGCCAAAGACGATAAAGAAAAGGTTCAATAATAGTGAAGTATTTCATGGTAAAAAAATTGAGACCTCAAAAAATTTGGGACTGAAAGGAAAAATAGATAAAATTCAAGCACAAAAAAATCGTACTTGAATCTAAGCATCATAACAACCCAGCTTTAGCCTTCAAAAGATAAGAGCTCACTCACCCTTCAATGTTCTGTTCCTCACAGAAGCTGCGGAGGGTAATACAGACATTTTTAACTCTCTGTGCACCTATGCTGTTAACCACAAAAGTCACAAAATCCTTCATTCAGTTTAGTTTTCGGTGCTCAAATTGATGAGTTTTTTTTTCTTTTCTAGAGAGAATACTATTTAATTCTCTTTTAGAGTTCGAAAATGGCAAGCTGCCAAATGAAAATTTTATTCACTCTATGCTTGATAAATTAGGGGGAAAAAAAAAACTGGCTGTTTGGAAGCTATTTACTCAAACTAGCCTTCTTTTTAGACAAAAAAATTAAGCATAAACATGATTATGTAACAGTTTCCCTCAAATATCATTAACTTTTATAAACAAACCCATAAAACTAGTTTTCGAATTAGGCTCCCAAAAGCTCATACATCATCAACACAAGGATATGAGGGAAAAAACGGGGTATTAGAAGTTTGGTGCCTACCTAGAACTGCTTCCTTTAAGCTGGTGAACATGGCCATCAACCTTTTGAAAATCCACATCAGGCTCTTCTCTGTAAAAAAAGGTTCAGAGAAAAAGGAAAACTCATATCAAAACAAAGATCAAAGAAACCCATAGATAGAAAAAGAAAAAGAAAAAAGCTTTGAGAAGCCTCCTCACAAAGCTCTGGTAAGATCATTGAGAAGCCTTTCAGAATCCTCAAAGAAAAGAGACACCACTTCAACAATGAAATCTGGGTTGCCCTCATCTTGCAGTTTCTGCAGCTCTATAAACTGACTGTCCAAGAAACCCTACTCTCTCCAAACACCAGAAACCAAACAATAAATAAATTAAGAAACTGAAACTACAAAGCAAGAAAACAAACCCCATTAAAGATTTGATCTTAGTTTTTGTTTTTTGTTCATACCTCCATGAATAGCGACTTTGTGTACTCAACCCATTGTCTCTGCATCAATCCCACCTCCATGCTTGCTTGCACTACACGCAAGAAACAAATAAAACTCCGTTATCAAAACTGCAACCCAAAATTGCAGATTTTTGAGGAAAGATTGCTTCAGACAAAGGGTTTTGAATGCCAGAAAAAACCTTTCAAAATTTTTGAGTAATAATGCAAAGCTTTTCCCTTTACTTTTAGGTATTATTATTGGTTGCACTTAAACTAGCAGACCAACCCAACTTTCCGTCTTCTCTGGATTTCTGTGCTGCTGCTGATTATTTGTGTCCCCAACCTCCCCAATTTCCTCTCTCTCTCTCTCGGCCTTTGCGCCATTTATTCATTTATGAGCCTCTCAACTCTGAAAGGAGTCCTTGAGCTCAACATTGTTTTCTCTGTTCTGGTTTATTATAATATTCCTTTTGACTGGTCTTTTTTTTTTTTTCTCTTGAGAAACTATTGGTTGTGGTTAATCGTTTTAGTTATAAGCTTGATGTTTATCTGAAAGAAGACTTGAAAGAAGACTTCATGGTTCTTTTCATCTATTGTCCTTGCACTATTACCATATTCTACTTTAGCCCTTGGTCCTTGTACTCCTAATTATTTCTTATTTCAAACCTTAACTTTGTGTGATGGATAGCAAATGATTTTGTATAATATTTTGAACAGTTTAGAACAGTAGAGATTAAGCGTCCCAGTCTAATAAAAGTTGAAGGACTAGAATTAGATTGA

mRNA sequence

GATCGAACCATGTCAACTGCATAGCGGGAATCTCTAAGCTCTGGTAGATCACAGTTTTTCTCGCTCTCTCTCTCTCTTTCTCTCTGTTTCTTTCTGCAAGACAAAGCCACCGGAAGCAATGGCGTCGTCGGCCGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTTAAAGAAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGTTTAGAACAGTAGAGATTAAGCGTCCCAGTCTAATAAAAGTTGAAGGACTAGAATTAGATTGA

Coding sequence (CDS)

ATGGCGTCGTCGGCCGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTTAAAGAAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGTTTAGAACAGTAGAGATTAAGCGTCCCAGTCTAATAAAAGTTGAAGGACTAGAATTAGATTGA

Protein sequence

MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQKSVGWYHDESDSGVHDGADGKKAGSVAARRLLHQFRTVEIKRPSLIKVEGLELD
Homology
[Close]
BLAST of CmaCh08G011920 vs. TrEMBL
Match: A0A0A0KBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.4e-38
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDG DGKKAGS A RRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]
BLAST of CmaCh08G011920 vs. TrEMBL
Match: W9S2S8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-28
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFR+ MVV++LL+ FYVGRPLYWKISATVHDIR+NKQTVKEG SQIV+EAQ+
Sbjct: 1  MASSTAKITFRIAMVVLVLLLFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVMEAQR 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRL 91
          +VGWYHDESDSG  +G  GK   S  +R+L
Sbjct: 61 TVGWYHDESDSGAREGRFGKNLRSATSRKL 90

[Close]
BLAST of CmaCh08G011920 vs. TrEMBL
Match: M5XMT6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.1e-27
Identity = 65/94 (69.15%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFR++++ ++LLV+FYVGRPLYWKISAT+H+IR NKQTV++G S+IVLEAQK
Sbjct: 1  MASSAARITFRILIIALVLLVLFYVGRPLYWKISATIHEIRENKQTVQQGLSKIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARR-LLHQ 94
          SVGWYHDESDSG       K  G    RR LLHQ
Sbjct: 61 SVGWYHDESDSGSRVNRVAKNVGLATTRRLLLHQ 94

[Close]
BLAST of CmaCh08G011920 vs. TrEMBL
Match: A0A059B408_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03661 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 62/93 (66.67%), Postives = 80/93 (86.02%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MAS  A+++FRV++ VV +LV+FYVGRPLYWKISATVH+IR NKQTV++GFS+IV EAQK
Sbjct: 1  MASPGAKVSFRVLLAVVAILVLFYVGRPLYWKISATVHEIRENKQTVQQGFSRIVYEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ 94
          SVGW+HDESDSGV    + ++AG+ A+RRLL +
Sbjct: 61 SVGWFHDESDSGVR---EDRRAGASASRRLLRE 90

[Close]
BLAST of CmaCh08G011920 vs. TrEMBL
Match: A0A0D2UVA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G183300 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-26
Identity = 63/91 (69.23%), Postives = 77/91 (84.62%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS +RITFR+V+ ++LLL +FYVGRPLYWKISAT+HDIR NKQTV++G SQI+LEAQK
Sbjct: 1  MASSTSRITFRIVIALLLLLALFYVGRPLYWKISATIHDIRHNKQTVQQGISQIMLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLL 92
          SVGW+ DESDSGVH+    K +   A+RRLL
Sbjct: 61 SVGWFTDESDSGVHE----KTSKQAASRRLL 87

[Close]
BLAST of CmaCh08G011920 vs. TAIR10
Match: AT5G18850.1 (AT5G18850.1 unknown protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-27
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1 

Query: 2  ASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQKS 61
          +S   RI FR V+++ L++V+FYVGRPLYWKISAT+HDIR NKQ+V+EG SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGADGKKAGSVAARRLL 92
          VGWYHDESDSG  +G   KK+G   +RRLL
Sbjct: 66 VGWYHDESDSGFREG-HNKKSGIAVSRRLL 94

[Close]
BLAST of CmaCh08G011920 vs. NCBI nr
Match: gi|778710944|ref|XP_011656652.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 5.3e-40
Identity = 89/108 (82.41%), Postives = 96/108 (88.89%), Query Frame = 1 

Query: 1   MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
           MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61  SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQFRTVEIKRPSLIKVE 109
           SVGWYHDESDSGVHDG DGKKAGS A RRLLHQF+T       L+KVE
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKT-----ECLVKVE 103

[Close]
BLAST of CmaCh08G011920 vs. NCBI nr
Match: gi|659117277|ref|XP_008458515.1| (PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 1.5e-39
Identity = 85/96 (88.54%), Postives = 91/96 (94.79%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQFRT 97
          SVGWYHDESDSGV DG DGKKAGSVA RRLLHQF+T
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQFKT 96

[Close]
BLAST of CmaCh08G011920 vs. NCBI nr
Match: gi|659117275|ref|XP_008458514.1| (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 3.8e-38
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQFR 96
          SVGWYHDESDSGV DG DGKKAGSVA RRLLHQ +
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQVK 95

[Close]
BLAST of CmaCh08G011920 vs. NCBI nr
Match: gi|700190975|gb|KGN46179.1| (hypothetical protein Csa_6G067370 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 4.9e-38
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDG DGKKAGS A RRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]
BLAST of CmaCh08G011920 vs. NCBI nr
Match: gi|778710941|ref|XP_011656651.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 4.9e-38
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDG DGKKAGS A RRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

The following BLAST results are available for this feature:
BLAST of CmaCh08G011920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G011920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBE9_CUCSA3.4e-3889.25Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1[more]
W9S2S8_9ROSA1.5e-2872.22Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1[more]
M5XMT6_PRUPE6.1e-2769.15Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1[more]
A0A059B408_EUCGR3.0e-2666.67Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03661 PE=4 SV=1[more]
A0A0D2UVA1_GOSRA5.2e-2669.23Uncharacterized protein OS=Gossypium raimondii GN=B456_011G183300 PE=4 SV=1[more]
BLAST of CmaCh08G011920 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18850.11.1e-2765.56 unknown protein[more]
BLAST of CmaCh08G011920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710944|ref|XP_011656652.1|5.3e-4082.41PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus][more]
gi|659117277|ref|XP_008458515.1|1.5e-3988.54PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo][more]
gi|659117275|ref|XP_008458514.1|3.8e-3887.37PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo][more]
gi|700190975|gb|KGN46179.1|4.9e-3889.25hypothetical protein Csa_6G067370 [Cucumis sativus][more]
gi|778710941|ref|XP_011656651.1|4.9e-3889.25PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G011920.1CmaCh08G011920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G011920Lsi09G013820Bottle gourd (USVL1VR-Ls)cmalsiB811
CmaCh08G011920Bhi12G001570Wax gourdcmawgoB1097
CmaCh08G011920CsGy6G005210Cucumber (Gy14) v2cgybcmaB865
CmaCh08G011920Carg05474Silver-seed gourdcarcmaB0096
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh08G011920CmaCh17G002940Cucurbita maxima (Rimu)cmacmaB373
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G011920Cucumber (Chinese Long) v3cmacucB1049
CmaCh08G011920Cucumber (Chinese Long) v3cmacucB1066
CmaCh08G011920Watermelon (97103) v2cmawmbB914
CmaCh08G011920Watermelon (97103) v2cmawmbB921
CmaCh08G011920Wax gourdcmawgoB1107
CmaCh08G011920Cucurbita maxima (Rimu)cmacmaB298
CmaCh08G011920Cucurbita maxima (Rimu)cmacmaB554
CmaCh08G011920Cucumber (Gy14) v1cgycmaB0731
CmaCh08G011920Cucumber (Gy14) v1cgycmaB1014
CmaCh08G011920Cucurbita moschata (Rifu)cmacmoB883
CmaCh08G011920Cucurbita moschata (Rifu)cmacmoB887
CmaCh08G011920Cucurbita moschata (Rifu)cmacmoB910
CmaCh08G011920Cucurbita moschata (Rifu)cmacmoB912
CmaCh08G011920Wild cucumber (PI 183967)cmacpiB903
CmaCh08G011920Wild cucumber (PI 183967)cmacpiB916
CmaCh08G011920Wild cucumber (PI 183967)cmacpiB927
CmaCh08G011920Cucumber (Chinese Long) v2cmacuB885
CmaCh08G011920Cucumber (Chinese Long) v2cmacuB896
CmaCh08G011920Cucumber (Chinese Long) v2cmacuB907
CmaCh08G011920Melon (DHL92) v3.5.1cmameB816
CmaCh08G011920Melon (DHL92) v3.5.1cmameB850
CmaCh08G011920Watermelon (Charleston Gray)cmawcgB796
CmaCh08G011920Watermelon (Charleston Gray)cmawcgB804
CmaCh08G011920Watermelon (97103) v1cmawmB869
CmaCh08G011920Watermelon (97103) v1cmawmB878
CmaCh08G011920Cucurbita pepo (Zucchini)cmacpeB895
CmaCh08G011920Cucurbita pepo (Zucchini)cmacpeB916
CmaCh08G011920Cucurbita pepo (Zucchini)cmacpeB928
CmaCh08G011920Cucurbita pepo (Zucchini)cmacpeB931
CmaCh08G011920Bottle gourd (USVL1VR-Ls)cmalsiB834
CmaCh08G011920Cucumber (Gy14) v2cgybcmaB454
CmaCh08G011920Melon (DHL92) v3.6.1cmamedB914
CmaCh08G011920Melon (DHL92) v3.6.1cmamedB950
CmaCh08G011920Silver-seed gourdcarcmaB0458
CmaCh08G011920Silver-seed gourdcarcmaB0850
CmaCh08G011920Silver-seed gourdcarcmaB1156