CmaCh08G006220 (gene) Cucurbita maxima (Rimu)

NameCmaCh08G006220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_2
LocationCma_Chr08 : 3490197 .. 3490799 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAACAAAGATATATTTCAAACACAAAATTCAAAAAACCTTCACTCCATTTTCATCCCCTCTTTCAACACGAACACGAACAAGAACAATTGTGTTCGACTTATGCCTTTGGGGAAATCTTCGGTTTGAGGATGCCATCGATCTTGAACTCATCGAATTTGGTGTTCGCCACAGCGATGGTGGCGTCGAGCACGCTGATGATCCTGGCGTATTTCCGGCATAACAAGGGCGACAGCGCCGCTACCCGACAGGCCGATGTTCGGATTCTTCGGCCTTGTCTCTGTTCAGGTAGAAAATTAAAATTAAATATTTAGAGAAAGCAGAAATTATTGATTTTTGCGTTGCAAACAGGTGGAAATAAAGATCGGAAGAAGAAGCAGAAGAAGGTTCAATTTGCAGAGAATGTGAAGAAGAAAGCGACGGAGGCGGAGGAGATGAAGAGGAAGATCACGGCCAGAAAATTGAAGAAAAATAGATGCAGAAGCAGTTTTCAAGGAAGCCAGATGCCGGAGAATCGTGTCGCTCTTTATAATGGCATTCTCAGAGATCGATCTAATAGAATGGGGTTTTCTTACTGAAATACACACACACAAACACTTTCT

mRNA sequence

CAAAAACAAAGATATATTTCAAACACAAAATTCAAAAAACCTTCACTCCATTTTCATCCCCTCTTTCAACACGAACACGAACAAGAACAATTGTGTTCGACTTATGCCTTTGGGGAAATCTTCGGTTTGAGGATGCCATCGATCTTGAACTCATCGAATTTGGTGTTCGCCACAGCGATGGTGGCGTCGAGCACGCTGATGATCCTGGCGTATTTCCGGCATAACAAGGGCGACAGCGCCGCTACCCGACAGGCCGATGTTCGGATTCTTCGGCCTTGTCTCTGTTCAGGTGGAAATAAAGATCGGAAGAAGAAGCAGAAGAAGGTTCAATTTGCAGAGAATGTGAAGAAGAAAGCGACGGAGGCGGAGGAGATGAAGAGGAAGATCACGGCCAGAAAATTGAAGAAAAATAGATGCAGAAGCAGTTTTCAAGGAAGCCAGATGCCGGAGAATCGTGTCGCTCTTTATAATGGCATTCTCAGAGATCGATCTAATAGAATGGGGTTTTCTTACTGAAATACACACACACAAACACTTTCT

Coding sequence (CDS)

ATGCCATCGATCTTGAACTCATCGAATTTGGTGTTCGCCACAGCGATGGTGGCGTCGAGCACGCTGATGATCCTGGCGTATTTCCGGCATAACAAGGGCGACAGCGCCGCTACCCGACAGGCCGATGTTCGGATTCTTCGGCCTTGTCTCTGTTCAGGTGGAAATAAAGATCGGAAGAAGAAGCAGAAGAAGGTTCAATTTGCAGAGAATGTGAAGAAGAAAGCGACGGAGGCGGAGGAGATGAAGAGGAAGATCACGGCCAGAAAATTGAAGAAAAATAGATGCAGAAGCAGTTTTCAAGGAAGCCAGATGCCGGAGAATCGTGTCGCTCTTTATAATGGCATTCTCAGAGATCGATCTAATAGAATGGGGTTTTCTTACTGA

Protein sequence

MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDRKKKQKKVQFAENVKKKATEAEEMKRKITARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSNRMGFSY
BLAST of CmaCh08G006220 vs. TrEMBL
Match: A0A0A0KA62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432590 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-15
Identity = 73/170 (42.94%), Postives = 92/170 (54.12%), Query Frame = 1

Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGD-----------SAATRQADVRILRPC 60
           M S+LNSSNLVFAT MV SST +ILA  R NK D              + ++ ++ILRPC
Sbjct: 1   MSSLLNSSNLVFATVMVVSSTALILALLRQNKPDLSSPPPSQLSGETTSPKSQLQILRPC 60

Query: 61  LCSGGNKDRKKKQKKVQFAEN--------VKKKATEAEEMKRKITARKLKKN-------- 120
           L SGG K +KK  KKVQFAEN        VKKK  + E  + KI    +KKN        
Sbjct: 61  LSSGGKKGKKK--KKVQFAENNNNNTNSDVKKKGIK-EIQREKIMLMMMKKNERLKLVKK 120

Query: 121 -RCR--------------SSFQGSQMPENRVALYNGILRDR-SNRMGFSY 128
            +CR              SS    ++P+NR+ LYN ILRDR ++R+ FSY
Sbjct: 121 VQCRNNNNAKSSSSSSSSSSSSNHRIPQNRLTLYNAILRDRCAHRIQFSY 167

BLAST of CmaCh08G006220 vs. TrEMBL
Match: V4MFV8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011857mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 58/126 (46.03%), Postives = 74/126 (58.73%), Query Frame = 1

Query: 7   SSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDRKKKQKKVQ 66
           S  +V ATAMV SST + LA  R   G+  +  Q D +ILR CLCS   K ++KK+KKV+
Sbjct: 8   SHGVVIATAMVFSSTALFLAISRQFSGNQTSDHQ-DQQILRSCLCSEEKKKQRKKKKKVK 67

Query: 67  FAENVKKKATEAEEMK-----RKITARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSN 126
           FAENVK+     EE +     R+I      K     S   + MP NR+ALYNGILRDR +
Sbjct: 68  FAENVKEPKGNGEEYRKREHLRRIVPEPTIKPEKTGSVCRNDMPANRIALYNGILRDRDH 127

Query: 127 RMGFSY 128
           R+  SY
Sbjct: 128 RIQCSY 132

BLAST of CmaCh08G006220 vs. TrEMBL
Match: A0A067GXT7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033125mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = 1

Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDRKK 60
           M SIL+S  +V ATAM A S  +IL  FR  K       Q   ++LR C+CS GNK R++
Sbjct: 1   MTSILSSQGMVLATAMAAVSGTVILLAFRLQKPSEIPQSQ---QVLRSCICSDGNKKRER 60

Query: 61  KQKKVQFAENVKKKATEAEEMKRKITARKLKKNRCRSSFQGS-QMPENRVALYNGILRDR 120
           K+K+V FAE+V       +E +++   +K   +   S F+ S  MP NRVALYNGILRDR
Sbjct: 61  KKKRVHFAEDVVDPRGNGDEFRKQHVVKKASSSSSSSRFKTSGGMPANRVALYNGILRDR 120

Query: 121 S-NRMGFSY 128
           +  R+ +SY
Sbjct: 121 TVQRLAYSY 126

BLAST of CmaCh08G006220 vs. TrEMBL
Match: V4UP42_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009903mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = 1

Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDRKK 60
           M SIL+S  +V ATAM A S  +IL  FR  K       Q   ++LR C+CS GNK R++
Sbjct: 1   MTSILSSQGMVLATAMAAVSGTVILLAFRLQKPSEIPQSQ---QVLRSCICSDGNKKRER 60

Query: 61  KQKKVQFAENVKKKATEAEEMKRKITARKLKKNRCRSSFQGS-QMPENRVALYNGILRDR 120
           K+K+V FAE+V       +E +++   +K   +   S F+ S  MP NRVALYNGILRDR
Sbjct: 61  KKKRVHFAEDVVDPRGNGDEFRKQHVVKKASSSSSSSRFKTSGGMPANRVALYNGILRDR 120

Query: 121 S-NRMGFSY 128
           +  R+ +SY
Sbjct: 121 TVQRLAYSY 126

BLAST of CmaCh08G006220 vs. TrEMBL
Match: A0A078HS86_BRANA (BnaC06g05400D protein OS=Brassica napus GN=BnaC06g05400D PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.7e-14
Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = 1

Query: 1   MPSILNSSN-LVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDRK 60
           M  IL+ S+ +V ATAMV SST + L   R   G++  +   D  ILRPCLCS   K ++
Sbjct: 1   MTCILSCSHGVVIATAMVFSSTALFLTISRQLCGNNQPSDIQDQHILRPCLCSEEKKKQR 60

Query: 61  KKQKKVQFAENVKKKATEAEEMKRKITA--RKLKKNRCRSSFQGS----QMPENRVALYN 120
           KK KKV+FAENVK+     EE +RK  +  R + +   +    GS     MP NR+ALYN
Sbjct: 61  KKNKKVKFAENVKEPKGNGEEYRRKRESLRRNVPEPVIKPDKTGSVCRNNMPANRIALYN 120

Query: 121 GILRDRSNRMGFSY 128
           GILRDR +R+  SY
Sbjct: 121 GILRDRDHRVQCSY 134

BLAST of CmaCh08G006220 vs. TAIR10
Match: AT1G52565.1 (AT1G52565.1 unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-15
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 1

Query: 1   MPSILNSSN-LVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNK-DR 60
           M  IL+ S+ +V ATAMV SST + LA  R   G+  + +Q    ILR CL S   K  R
Sbjct: 1   MTCILSCSHGVVIATAMVFSSTALFLAISRQFSGNQTSDQQ----ILRSCLSSEEKKKQR 60

Query: 61  KKKQKKVQFAENVKKKATEAEEMKRKITARKLKKNRCRSSFQGS----QMPENRVALYNG 120
           K K+KKV+FAENVK+     EE ++K   R + +   +    GS     MP NR+ALYNG
Sbjct: 61  KNKKKKVKFAENVKETKGNGEEYRKKSLRRIVPEQMIKPEKTGSVCRNDMPANRIALYNG 120

Query: 121 ILRDRSNRMGFSY 128
           ILRDR +R+  SY
Sbjct: 121 ILRDRDHRIQCSY 129

BLAST of CmaCh08G006220 vs. TAIR10
Match: AT3G15760.1 (AT3G15760.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 56/131 (42.75%), Postives = 73/131 (55.73%), Query Frame = 1

Query: 6   NSSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVR---ILRPCLCSGGNKDRKKKQ 65
           ++  +V ATAMV SST + LA  R   G+    +  D     ILR CL S   K + KK 
Sbjct: 5   SNGTVVIATAMVCSSTALFLAMARQFHGNHQNPKVLDQTLRPILRSCLSSEETKKQGKKI 64

Query: 66  KKVQFAENVKKKATEAEEMKRKITARK------LKKNRCRSSFQGSQMPENRVALYNGIL 125
           KKV+FA+NVK      EE +R+   RK       K  +  S  + S MP NR+ALYNGIL
Sbjct: 65  KKVRFADNVKDTKGNGEEYRRRELNRKSVPKPVTKPGKTGSMCRISTMPANRMALYNGIL 124

Query: 126 RDRSNRMGFSY 128
           RDR +R+ +SY
Sbjct: 125 RDRDHRVQYSY 135

BLAST of CmaCh08G006220 vs. NCBI nr
Match: gi|1009112810|ref|XP_015870257.1| (PREDICTED: uncharacterized protein LOC107407483 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-17
Identity = 64/141 (45.39%), Postives = 87/141 (61.70%), Query Frame = 1

Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNK----------GDSAATRQADVRILRPCL 60
           M S+L+S  LV ATAM  SST++ LA+ RH            G    ++Q    +LR CL
Sbjct: 1   MSSVLSSQGLVLATAMAVSSTVLFLAFSRHKTTFLPTQFSGTGSYNDSQQPKKHVLRSCL 60

Query: 61  CSGGNKDRK-KKQKKVQFAENVKKKATEAEEMKR--KITARKLKKNRCRSSFQGSQ-MPE 120
           CSG ++ +K +K+KKVQFAENVK+ +   EE K+  K T++  K +  R+   G + MP 
Sbjct: 61  CSGDSRKKKQRKKKKVQFAENVKEPSGNGEEFKKQHKKTSKSEKSSNSRNQMSGIRGMPA 120

Query: 121 NRVALYNGILRDRSNRMGFSY 128
           NR+ALYNGILRDR +RM  SY
Sbjct: 121 NRIALYNGILRDRVHRMECSY 141

BLAST of CmaCh08G006220 vs. NCBI nr
Match: gi|700190044|gb|KGN45277.1| (hypothetical protein Csa_7G432590 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 73/170 (42.94%), Postives = 92/170 (54.12%), Query Frame = 1

Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGD-----------SAATRQADVRILRPC 60
           M S+LNSSNLVFAT MV SST +ILA  R NK D              + ++ ++ILRPC
Sbjct: 1   MSSLLNSSNLVFATVMVVSSTALILALLRQNKPDLSSPPPSQLSGETTSPKSQLQILRPC 60

Query: 61  LCSGGNKDRKKKQKKVQFAEN--------VKKKATEAEEMKRKITARKLKKN-------- 120
           L SGG K +KK  KKVQFAEN        VKKK  + E  + KI    +KKN        
Sbjct: 61  LSSGGKKGKKK--KKVQFAENNNNNTNSDVKKKGIK-EIQREKIMLMMMKKNERLKLVKK 120

Query: 121 -RCR--------------SSFQGSQMPENRVALYNGILRDR-SNRMGFSY 128
            +CR              SS    ++P+NR+ LYN ILRDR ++R+ FSY
Sbjct: 121 VQCRNNNNAKSSSSSSSSSSSSNHRIPQNRLTLYNAILRDRCAHRIQFSY 167

BLAST of CmaCh08G006220 vs. NCBI nr
Match: gi|567917840|ref|XP_006450926.1| (hypothetical protein CICLE_v10009903mg [Citrus clementina])

HSP 1 Score: 85.5 bits (210), Expect = 7.3e-14
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = 1

Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDRKK 60
           M SIL+S  +V ATAM A S  +IL  FR  K       Q   ++LR C+CS GNK R++
Sbjct: 1   MTSILSSQGMVLATAMAAVSGTVILLAFRLQKPSEIPQSQ---QVLRSCICSDGNKKRER 60

Query: 61  KQKKVQFAENVKKKATEAEEMKRKITARKLKKNRCRSSFQGS-QMPENRVALYNGILRDR 120
           K+K+V FAE+V       +E +++   +K   +   S F+ S  MP NRVALYNGILRDR
Sbjct: 61  KKKRVHFAEDVVDPRGNGDEFRKQHVVKKASSSSSSSRFKTSGGMPANRVALYNGILRDR 120

Query: 121 S-NRMGFSY 128
           +  R+ +SY
Sbjct: 121 TVQRLAYSY 126

BLAST of CmaCh08G006220 vs. NCBI nr
Match: gi|1021565265|ref|XP_016173991.1| (PREDICTED: uncharacterized protein LOC107616553 [Arachis ipaensis])

HSP 1 Score: 85.5 bits (210), Expect = 7.3e-14
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 1

Query: 7   SSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDR----KKKQ 66
           S  +VF TAMV SST++ LA+ RH     +   Q++ +ILR CL S   K      KKK+
Sbjct: 5   SQGIVFTTAMVLSSTVLYLAFSRHKIHHHSP--QSNNQILRSCLSSEEKKRERKLSKKKK 64

Query: 67  KKVQFAENVKKKATEAEEMKRKITARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSNR 126
           K+VQFAENVK++  ++EE +RK      + + CR+     +MP NR+ALYNGILRDR +R
Sbjct: 65  KRVQFAENVKERIGKSEEEQRKQNRVSSRSSNCRNV---REMPANRIALYNGILRDRVHR 124

Query: 127 MGFSY 128
           M  SY
Sbjct: 125 MECSY 124

BLAST of CmaCh08G006220 vs. NCBI nr
Match: gi|567132181|ref|XP_006392905.1| (hypothetical protein EUTSA_v10011857mg [Eutrema salsugineum])

HSP 1 Score: 85.5 bits (210), Expect = 7.3e-14
Identity = 58/126 (46.03%), Postives = 74/126 (58.73%), Query Frame = 1

Query: 7   SSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDRKKKQKKVQ 66
           S  +V ATAMV SST + LA  R   G+  +  Q D +ILR CLCS   K ++KK+KKV+
Sbjct: 8   SHGVVIATAMVFSSTALFLAISRQFSGNQTSDHQ-DQQILRSCLCSEEKKKQRKKKKKVK 67

Query: 67  FAENVKKKATEAEEMK-----RKITARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSN 126
           FAENVK+     EE +     R+I      K     S   + MP NR+ALYNGILRDR +
Sbjct: 68  FAENVKEPKGNGEEYRKREHLRRIVPEPTIKPEKTGSVCRNDMPANRIALYNGILRDRDH 127

Query: 127 RMGFSY 128
           R+  SY
Sbjct: 128 RIQCSY 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KA62_CUCSA2.1e-1542.94Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432590 PE=4 SV=1[more]
V4MFV8_EUTSA5.1e-1446.03Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011857mg PE=4 SV=1[more]
A0A067GXT7_CITSI5.1e-1444.19Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033125mg PE=4 SV=1[more]
V4UP42_9ROSI5.1e-1444.19Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009903mg PE=4 SV=1[more]
A0A078HS86_BRANA8.7e-1445.52BnaC06g05400D protein OS=Brassica napus GN=BnaC06g05400D PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G52565.13.2e-1545.11 unknown protein[more]
AT3G15760.11.6e-1442.75 unknown protein[more]
Match NameE-valueIdentityDescription
gi|1009112810|ref|XP_015870257.1|3.2e-1745.39PREDICTED: uncharacterized protein LOC107407483 [Ziziphus jujuba][more]
gi|700190044|gb|KGN45277.1|3.0e-1542.94hypothetical protein Csa_7G432590 [Cucumis sativus][more]
gi|567917840|ref|XP_006450926.1|7.3e-1444.19hypothetical protein CICLE_v10009903mg [Citrus clementina][more]
gi|1021565265|ref|XP_016173991.1|7.3e-1446.40PREDICTED: uncharacterized protein LOC107616553 [Arachis ipaensis][more]
gi|567132181|ref|XP_006392905.1|7.3e-1446.03hypothetical protein EUTSA_v10011857mg [Eutrema salsugineum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G006220.1CmaCh08G006220.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 58..88
scor
NoneNo IPR availablePANTHERPTHR33564FAMILY NOT NAMEDcoord: 1..127
score: 2.9
NoneNo IPR availablePANTHERPTHR33564:SF1SUBFAMILY NOT NAMEDcoord: 1..127
score: 2.9

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G006220Melon (DHL92) v3.6.1cmamedB922
CmaCh08G006220Silver-seed gourdcarcmaB1425
CmaCh08G006220Wax gourdcmawgoB1104
CmaCh08G006220Wax gourdcmawgoB1124
CmaCh08G006220Cucurbita moschata (Rifu)cmacmoB913
CmaCh08G006220Melon (DHL92) v3.5.1cmameB824
CmaCh08G006220Watermelon (97103) v1cmawmB857
CmaCh08G006220Cucurbita pepo (Zucchini)cmacpeB902
CmaCh08G006220Cucurbita pepo (Zucchini)cmacpeB917