Carg23143 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23143
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome P450 family protein
Location	Cucurbita_argyrosperma_scaffold_194 : 122233 .. 122699 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCGATCTTGAACTCATCGAATTTGGTGTTCGCCACGGCGATGGTGGCGTCGAGCACGCTGATGATCCTGGCATATTTCCGGCATAACAAGGGCGACGGCGCCGCTTCCCGACAGGCCGATGTCCGGATTCTTCGGCCTTGTCTCTGTTCAGGTAGAAAATTAAAATAATAATAAAAAAAAAATTAAAGAATTAGAGAAGAAGAAATTATTGAATAATTTTTGCGTTGCAAACAGGTGGGAATAAAGATCGGAAGAAGAAGCAGAAGAAGGTTCAATTTGCAGAGAACGTGAAGAAGAAAGCGACAGAGGCGGAGGAGATGAAGAAGAAGATCATGGCCAGAAAATTGAAGAAAAATAGATGCAGAAGCAGTTTTCAAGGAAGCCAGATGCCGGAGAATCGTGTCGCTCTTTATAATGGCATTCTCAGAGATCGATCTAATAGAATGGGCTTTTCTTACTGA

mRNA sequence

ATGCCATCGATCTTGAACTCATCGAATTTGGTGTTCGCCACGGCGATGGTGGCGTCGAGCACGCTGATGATCCTGGCATATTTCCGGCATAACAAGGGCGACGGCGCCGCTTCCCGACAGGCCGATGTCCGGATTCTTCGGCCTTGTCTCTGTTCAGGTGGGAATAAAGATCGGAAGAAGAAGCAGAAGAAGGTTCAATTTGCAGAGAACGTGAAGAAGAAAGCGACAGAGGCGGAGGAGATGAAGAAGAAGATCATGGCCAGAAAATTGAAGAAAAATAGATGCAGAAGCAGTTTTCAAGGAAGCCAGATGCCGGAGAATCGTGTCGCTCTTTATAATGGCATTCTCAGAGATCGATCTAATAGAATGGGCTTTTCTTACTGA

Coding sequence (CDS)

ATGCCATCGATCTTGAACTCATCGAATTTGGTGTTCGCCACGGCGATGGTGGCGTCGAGCACGCTGATGATCCTGGCATATTTCCGGCATAACAAGGGCGACGGCGCCGCTTCCCGACAGGCCGATGTCCGGATTCTTCGGCCTTGTCTCTGTTCAGGTGGGAATAAAGATCGGAAGAAGAAGCAGAAGAAGGTTCAATTTGCAGAGAACGTGAAGAAGAAAGCGACAGAGGCGGAGGAGATGAAGAAGAAGATCATGGCCAGAAAATTGAAGAAAAATAGATGCAGAAGCAGTTTTCAAGGAAGCCAGATGCCGGAGAATCGTGTCGCTCTTTATAATGGCATTCTCAGAGATCGATCTAATAGAATGGGCTTTTCTTACTGA

Protein sequence

MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDGAASRQADVRILRPCLCSGGNKDRKKKQKKVQFAENVKKKATEAEEMKKKIMARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSNRMGFSY

Homology

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BLAST of Carg23143 vs. NCBI nr
Match: XP_023004360.1 (uncharacterized protein LOC111497701 [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 2.2e-51
Identity = 121/127 (95.28%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDGAASRQADVRILRPCLCSGGNKDRKK 60
           MPSILNSSNLVFATAMVASSTLMILAYFRHNKGD AA+RQADVRILRPCLCSGGNKDRKK
Sbjct: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDSAATRQADVRILRPCLCSGGNKDRKK 60

Query: 61  KQKKVQFAENVKKXXXXXXXXXXXIMARKLKKNRCRSSFQGSQMPENRVALYNGILRDRS 120
           KQKKVQFAENVK XXXXXXXXXXX   RKLKKNRCRSSFQGSQMPENRVALYNGILRDRS
Sbjct: 61  KQKKVQFAENVKXXXXXXXXXXXXXXXRKLKKNRCRSSFQGSQMPENRVALYNGILRDRS 120

Query: 121 NRMGFSY 128
           NRMGFSY
Sbjct: 121 NRMGFSY 127

[Close]

BLAST of Carg23143 vs. NCBI nr
Match: XP_022960430.1 (uncharacterized protein LOC111461163 [Cucurbita moschata])

HSP 1 Score: 197.6 bits (501), Expect = 2.6e-47
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 16  MVASSTLMILAYFRHNKGDGAASRQADVRILRPCLCSGGNKDRKKKQKKVQFAENVKKXX 75
           MVASSTLMILAYFRHNKGDGAASRQADVRILRPCLCSGGNKDRKKKQKKVQFAENVKKXX
Sbjct: 1   MVASSTLMILAYFRHNKGDGAASRQADVRILRPCLCSGGNKDRKKKQKKVQFAENVKKXX 60

Query: 76  XXXXXXXXXIMARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSNRMGFSY 128
           XXXXXXXXXIMARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSNRMGFSY
Sbjct: 61  XXXXXXXXXIMARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSNRMGFSY 112

[Close]

BLAST of Carg23143 vs. NCBI nr
Match: XP_023514528.1 (uncharacterized protein LOC111778785 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 103/112 (91.96%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 16  MVASSTLMILAYFRHNKGDGAASRQADVRILRPCLCSGGNKDRKKKQKKVQFAENVKKXX 75
           MVASSTLMILAYFRHNKGDGAASRQ+DVRILRPCLCSGGNKDRKKKQKKVQFAENV  XX
Sbjct: 1   MVASSTLMILAYFRHNKGDGAASRQSDVRILRPCLCSGGNKDRKKKQKKVQFAENVXXXX 60

Query: 76  XXXXXXXXXIMARKLKKNRCRSSFQGSQMPENRVALYNGILRDRSNRMGFSY 128
           XXXXXXXXX     LKKNRCR SFQGSQMPENRVALYNGILRDRSNRMGFSY
Sbjct: 61  XXXXXXXXXXXXXXLKKNRCRGSFQGSQMPENRVALYNGILRDRSNRMGFSY 112

[Close]

BLAST of Carg23143 vs. NCBI nr
Match: XP_007215149.1 (uncharacterized protein LOC18783683 [Prunus persica] >ONI16210.1 hypothetical protein PRUPE_3G084900 [Prunus persica])

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 56/134 (41.79%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNK------GDGAASRQADVR-ILRPCLCSG 60
           M S+L+S  LV ATAM  SSTL+ LA+ R          D   S+Q   +  LR CLCS 
Sbjct: 1   MSSMLSSQGLVLATAMAVSSTLVFLAFSRQKTFLPTQLSDSYNSQQNPKKTALRSCLCS- 60

Query: 61  GNKDRKKKQKKVQFAENVKKXXXXXXXXXXXIMARKLKKNRCRSSFQGSQMPENRVALYN 120
           G+K R++K+KKV FA+NV K               K+++  CR     +++PENR+ALYN
Sbjct: 61  GDKKRERKKKKVHFAKNVVKEPTGGGEEMVMRKQSKVERRSCR-----NEIPENRIALYN 120

Query: 121 GILRDRSNRMGFSY 128
           GIL++R  RM  S+
Sbjct: 121 GILKNRVERMQCSH 128

[Close]

BLAST of Carg23143 vs. NCBI nr
Match: XP_018469584.1 (PREDICTED: uncharacterized protein LOC108841306 [Raphanus sativus])

HSP 1 Score: 80.5 bits (197), Expect = 4.6e-12
Identity = 61/135 (45.19%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 1   MPSILNSSN-LVFATAMVASSTLMILAYFRHNKGDGAASRQADVRILRPCLCS-GGNKDR 60
           M  IL+ S+ +V ATAMV SST + L   R   G+   S   D +ILRPCLCS    K R
Sbjct: 1   MTCILSCSHGVVIATAMVFSSTALFLTISRQLSGNHQTS---DQQILRPCLCSEQTKKQR 60

Query: 61  KKKQKKVQFAENVK------KXXXXXXXXXXXIMARKLKKNRCRSSFQGSQMPENRVALY 120
           KKK KKV+FAENVK      +           I+   + K    SS   + MP NR+ALY
Sbjct: 61  KKKNKKVKFAENVKEPKGNGEEYRRKRESLRRIVPEPVIKPGKTSSVCRNDMPANRIALY 120

Query: 121 NGILRDRSNRMGFSY 128
           NGILRDR +R+  SY
Sbjct: 121 NGILRDRDHRVQCSY 132

[Close]

BLAST of Carg23143 vs. TAIR10
Match: AT3G15760.1 (unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 6   NSSNLVFATAMVASSTLMILAYFRHNKGDGAASRQADVR---ILRPCLCSGGNKDRKKKQ 65
           ++  +V ATAMV SST + LA  R   G+    +  D     ILR CL S   K + KK 
Sbjct: 5   SNGTVVIATAMVCSSTALFLAMARQFHGNHQNPKVLDQTLRPILRSCLSSEETKKQGKKI 64

Query: 66  KKVQFAENVKKXXXXXXXXXXXIMARK------LKKNRCRSSFQGSQMPENRVALYNGIL 125
           KKV+FA+NVK             + RK       K  +  S  + S MP NR+ALYNGIL
Sbjct: 65  KKVRFADNVKDTKGNGEEYRRRELNRKSVPKPVTKPGKTGSMCRISTMPANRMALYNGIL 124

Query: 126 RDRSNRMGFSY 128
           RDR +R+ +SY
Sbjct: 125 RDRDHRVQYSY 135

[Close]

BLAST of Carg23143 vs. TAIR10
Match: AT1G52565.1 (unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 7.5e-09
Identity = 49/133 (36.84%), Postives = 66/133 (49.62%), Query Frame = 0


Query: 1   MPSILNSSN-LVFATAMVASSTLMILAYFRHNKGDGAASRQADVRILRPCL-CSGGNKDR 60
           M  IL+ S+ +V ATAMV SST + LA  R   G    ++ +D +ILR CL         
Sbjct: 1   MTCILSCSHGVVIATAMVFSSTALFLAISRQFSG----NQTSDQQILRSCLXXXXXXXXX 60

Query: 61  KKKQKKVQFAENVKKXXXXXXXXXXXIMARKLKKNRCRSSFQGS----QMPENRVALYNG 120
                  +FAENVK+            + R + +   +    GS     MP NR+ALYNG
Sbjct: 61  XXXXXXXKFAENVKETKGNGEEYRKKSLRRIVPEQMIKPEKTGSVCRNDMPANRIALYNG 120

Query: 121 ILRDRSNRMGFSY 128
           ILRDR +R+  SY
Sbjct: 121 ILRDRDHRIQCSY 129

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BLAST of Carg23143 vs. TrEMBL
Match: tr|A0A2P2PQB5|A0A2P2PQB5_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDGAASRQADVRI----LRPCLCSG--- 60
           M S+++S  LV ATAMV SST++ L + +         +  D R+    LR CLCSG   
Sbjct: 1   MSSMISSQGLVLATAMVVSSTVIYLTFSKQKTMKPQLLKNQDPRLPSQKLRSCLCSGVKE 60

Query: 61  GNKDRKKKQKKVQFAENVKK----XXXXXXXXXXXIMARKLKKN--------RCRSSFQG 120
           G   +KK++K+VQFAENVK+               + AR+ K++         CR+  QG
Sbjct: 61  GKDKKKKREKRVQFAENVKETKGNGEEYRREKENLLFAREEKESLNSRIVDGSCRNETQG 120

Query: 121 SQ-MPENRVALYNGILRDRSNRMGFSY 128
           ++ MP NRVALY+GILRDR +RM  S+
Sbjct: 121 NRGMPANRVALYSGILRDRVHRMQCSH 147

[Close]

BLAST of Carg23143 vs. TrEMBL
Match: tr|M5X495|M5X495_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G084900 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 56/134 (41.79%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNK------GDGAASRQADVR-ILRPCLCSG 60
           M S+L+S  LV ATAM  SSTL+ LA+ R          D   S+Q   +  LR CLCS 
Sbjct: 1   MSSMLSSQGLVLATAMAVSSTLVFLAFSRQKTFLPTQLSDSYNSQQNPKKTALRSCLCS- 60

Query: 61  GNKDRKKKQKKVQFAENVKKXXXXXXXXXXXIMARKLKKNRCRSSFQGSQMPENRVALYN 120
           G+K R++K+KKV FA+NV K               K+++  CR     +++PENR+ALYN
Sbjct: 61  GDKKRERKKKKVHFAKNVVKEPTGGGEEMVMRKQSKVERRSCR-----NEIPENRIALYN 120

Query: 121 GILRDRSNRMGFSY 128
           GIL++R  RM  S+
Sbjct: 121 GILKNRVERMQCSH 128

[Close]

BLAST of Carg23143 vs. TrEMBL
Match: tr|A0A2P5EX44|A0A2P5EX44_9ROSA (Cytochrome P450 family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_141390 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.0e-12
Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 0


Query: 4   ILNSSNLVFATAMVASSTLMILAYFRHN--------KGDGAASRQAD-VRILRPCLCSGG 63
           +L S  LV ATAMV SST++ L + R           G+  + + ++  +I RPCL SG 
Sbjct: 1   MLGSQGLVLATAMVVSSTVLFLTFSRQKITSPPTKYSGNHDSEQPSEKTKIPRPCLSSGE 60

Query: 64  NKDRKKKQKKVQFAENVKKXXXXXXXXXXXIMARKLKKNRCRSSFQGSQ-MPENRVALYN 123
            K  ++K+KKV+FAENVK+              R   +  CR+   G Q MP NRVALYN
Sbjct: 61  KKKSERKKKKVKFAENVKEPTGNGEEFRNQHKKRSRVEMNCRNEIPGIQRMPPNRVALYN 120

[Close]

BLAST of Carg23143 vs. TrEMBL
Match: tr|A0A1U7ZYW4|A0A1U7ZYW4_NELNU (uncharacterized protein LOC104595389 OS=Nelumbo nucifera OX=4432 GN=LOC104595389 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.7e-12
Identity = 59/135 (43.70%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDG---AASRQAD--VRILRPCLCSGGN 60
           M SIL+S  +VFATAM  S T+++LAY R     G   A  R +D    +LR C+ S G 
Sbjct: 1   MSSILSSQGVVFATAMAVSGTVILLAYCRQKPLPGTQFAVDRNSDSTAPVLRSCISSDGK 60

Query: 61  KDRKKKQKKVQFAENVKKXXXXXXXXXXXIMARKLKKNR-CRSSFQG--SQMPENRVALY 120
           K R KK+K+V FAE+V                + L  N+ CRS  +     MP NR+ALY
Sbjct: 61  K-RNKKKKRVHFAEDVVDPIGNSEEFRREHHKKSLSLNQVCRSVNRSVVQGMPGNRMALY 120

Query: 121 NGILRDRSNRMGFSY 128
           NGILRDR  RM  SY
Sbjct: 121 NGILRDRVQRMACSY 134

[Close]

BLAST of Carg23143 vs. TrEMBL
Match: tr|V4UP42|V4UP42_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009903mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-11
Identity = 54/129 (41.86%), Postives = 70/129 (54.26%), Query Frame = 0


Query: 1   MPSILNSSNLVFATAMVASSTLMILAYFRHNKGDGAASRQADVRILRPCLCSGGNKDRKK 60
           M SIL+S  +V ATAM A S  +IL  FR  K       Q   ++LR C+CS GNK R++
Sbjct: 1   MTSILSSQGMVLATAMAAVSGTVILLAFRLQKPSEIPQSQ---QVLRSCICSDGNKKRER 60

Query: 61  KQKKVQFAENVKKXXXXXXXXXXXIMARKLKKNRCRSSFQGS-QMPENRVALYNGILRDR 120
           K+K+V FAE+V              +            F+ S  MP NRVALYNGILRDR
Sbjct: 61  KKKRVHFAEDVVDPRGNGDEFRKQHVXXXXXXXXXXXRFKTSGGMPANRVALYNGILRDR 120

Query: 121 S-NRMGFSY 128
           +  R+ +SY
Sbjct: 121 TVQRLAYSY 126

The following BLAST results are available for this feature:

BLAST of Carg23143 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004360.1	2.2e-51	95.28	uncharacterized protein LOC111497701 [Cucurbita maxima]	[more]
XP_022960430.1	2.6e-47	100.00	uncharacterized protein LOC111461163 [Cucurbita moschata]	[more]
XP_023514528.1	7.2e-42	91.96	uncharacterized protein LOC111778785 [Cucurbita pepo subsp. pepo]	[more]
XP_007215149.1	2.7e-12	41.79	uncharacterized protein LOC18783683 [Prunus persica] >ONI16210.1 hypothetical pr...	[more]
XP_018469584.1	4.6e-12	45.19	PREDICTED: uncharacterized protein LOC108841306 [Raphanus sativus]	[more]

BLAST of Carg23143 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15760.1	1.0e-13	40.46	unknown protein	[more]
AT1G52565.1	7.5e-09	36.84	unknown protein	[more]

BLAST of Carg23143 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23143 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P2PQB5\|A0A2P2PQB5_RHIMU	1.0e-12	40.14	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|M5X495\|M5X495_PRUPE	1.8e-12	41.79	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G084900 PE=4 SV=1	[more]
tr\|A0A2P5EX44\|A0A2P5EX44_9ROSA	4.0e-12	41.09	Cytochrome P450 family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_141390...	[more]
tr\|A0A1U7ZYW4\|A0A1U7ZYW4_NELNU	6.7e-12	43.70	uncharacterized protein LOC104595389 OS=Nelumbo nucifera OX=4432 GN=LOC104595389...	[more]
tr\|V4UP42\|V4UP42_9ROSI	3.3e-11	41.86	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009903mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23143-RA	Carg23143-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..88
None	No IPR available	PANTHER	PTHR33564:SF1	SUBFAMILY NOT NAMED	coord: 1..127
None	No IPR available	PANTHER	PTHR33564	FAMILY NOT NAMED	coord: 1..127

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23143	Csa7G432590	Cucumber (Chinese Long) v2	carcuB0160
Carg23143	ClCG09G002860	Watermelon (Charleston Gray)	carwcgB0140
Carg23143	CSPI07G20630	Wild cucumber (PI 183967)	carcpiB0166
Carg23143	CmaCh08G006220	Cucurbita maxima (Rimu)	carcmaB0193
Carg23143	Lsi02G027170	Bottle gourd (USVL1VR-Ls)	carlsiB130
Carg23143	CsGy7G018910	Cucumber (Gy14) v2	carcgybB0158
Carg23143	MELO3C029251.2	Melon (DHL92) v3.6.1	carmedB0151
Carg23143	CsaV3_7G032470	Cucumber (Chinese Long) v3	carcucB0167

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23143	Silver-seed gourd	carcarB170
Carg23143	Cucurbita maxima (Rimu)	carcmaB0192
Carg23143	Cucurbita moschata (Rifu)	carcmoB0198
Carg23143	Cucurbita moschata (Rifu)	carcmoB0199
Carg23143	Cucurbita pepo (Zucchini)	carcpeB0209
Carg23143	Cucurbita pepo (Zucchini)	carcpeB0210
Carg23143	Melon (DHL92) v3.5.1	carmeB0148
Carg23143	Watermelon (97103) v1	carwmB0139
Carg23143	Watermelon (97103) v2	carwmbB0152
Carg23143	Wax gourd	carwgoB0183