CmaCh08G004400 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G004400
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr08 : 2480995 .. 2481288 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTTTCCGGAAGCGGGAGGAGAACTATTACTACTTTGTCGAGCAAAGAACCAAAATTTCCCGACCACTGCAAAAGGTCGCAAACGACGGCGAGCTTCACCACCTCCCTTGGCGTACGAACAACTTTGATCACGATCTGTTCTTCAATTACCCGGCCCCGTCCCGTGTCGGAGAAGTTAGGAGCACCATTGATAGCAAAGAGGCCGCTGAGAGGTACGGCGGAATTTCCATCATCGATTACTACATCACCAAGAAACCTGCGGCGGCGGCGGCCAGATTTCGCAATTAG

mRNA sequence

ATGGCAACTTTCCGGAAGCGGGAGGAGAACTATTACTACTTTGTCGAGCAAAGAACCAAAATTTCCCGACCACTGCAAAAGGTCGCAAACGACGGCGAGCTTCACCACCTCCCTTGGCGTACGAACAACTTTGATCACGATCTGTTCTTCAATTACCCGGCCCCGTCCCGTGTCGGAGAAGTTAGGAGCACCATTGATAGCAAAGAGGCCGCTGAGAGGTACGGCGGAATTTCCATCATCGATTACTACATCACCAAGAAACCTGCGGCGGCGGCGGCCAGATTTCGCAATTAG

Coding sequence (CDS)

ATGGCAACTTTCCGGAAGCGGGAGGAGAACTATTACTACTTTGTCGAGCAAAGAACCAAAATTTCCCGACCACTGCAAAAGGTCGCAAACGACGGCGAGCTTCACCACCTCCCTTGGCGTACGAACAACTTTGATCACGATCTGTTCTTCAATTACCCGGCCCCGTCCCGTGTCGGAGAAGTTAGGAGCACCATTGATAGCAAAGAGGCCGCTGAGAGGTACGGCGGAATTTCCATCATCGATTACTACATCACCAAGAAACCTGCGGCGGCGGCGGCCAGATTTCGCAATTAG

Protein sequence

MATFRKREENYYYFVEQRTKISRPLQKVANDGELHHLPWRTNNFDHDLFFNYPAPSRVGEVRSTIDSKEAAERYGGISIIDYYITKKPAAAAARFRN
Homology
[Close]
BLAST of CmaCh08G004400 vs. TrEMBL
Match: A0A0A0K673_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G404810 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 1 

Query: 1   MATFRKREENYYYFVEQRTKI--SR------PLQKVAN-DGELHHLPWRTNNFDHDLFF- 60
           MA F K+EE Y+YF  +RT+   SR      PL K +  +GE+ HL    NN DH L F 
Sbjct: 1   MAAFFKKEE-YHYFSFERTRAITSRSPQPPPPLHKKSPYEGEIQHLRRSKNNCDHTLIFE 60

Query: 61  ---NYPAPSRVGEVRSTIDSKEAAERYGGISIIDYYITKKPAAAAARFR 97
              N  A   V E ++TI+SK+AA+ YGGI+I+D++ TKKPA     FR
Sbjct: 61  CSVNSAAAPNVREAKTTINSKQAAQMYGGINIVDFW-TKKPATTTGEFR 107

[Close]
BLAST of CmaCh08G004400 vs. NCBI nr
Match: gi|700189740|gb|KGN44973.1| (hypothetical protein Csa_7G404810 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 49/109 (44.95%), Postives = 65/109 (59.63%), Query Frame = 1 

Query: 1   MATFRKREENYYYFVEQRTKI--SR------PLQKVAN-DGELHHLPWRTNNFDHDLFF- 60
           MA F K+EE Y+YF  +RT+   SR      PL K +  +GE+ HL    NN DH L F 
Sbjct: 1   MAAFFKKEE-YHYFSFERTRAITSRSPQPPPPLHKKSPYEGEIQHLRRSKNNCDHTLIFE 60

Query: 61  ---NYPAPSRVGEVRSTIDSKEAAERYGGISIIDYYITKKPAAAAARFR 97
              N  A   V E ++TI+SK+AA+ YGGI+I+D++ TKKPA     FR
Sbjct: 61  CSVNSAAAPNVREAKTTINSKQAAQMYGGINIVDFW-TKKPATTTGEFR 107

The following BLAST results are available for this feature:
BLAST of CmaCh08G004400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G004400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K673_CUCSA1.5e-1044.95Uncharacterized protein OS=Cucumis sativus GN=Csa_7G404810 PE=4 SV=1[more]
BLAST of CmaCh08G004400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G004400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189740|gb|KGN44973.1|2.2e-1044.95hypothetical protein Csa_7G404810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G004400.1CmaCh08G004400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G004400Cla015100Watermelon (97103) v1cmawmB856
CmaCh08G004400Csa7G404810Cucumber (Chinese Long) v2cmacuB914
CmaCh08G004400MELO3C015965Melon (DHL92) v3.5.1cmameB831
CmaCh08G004400ClCG09G005550Watermelon (Charleston Gray)cmawcgB786
CmaCh08G004400CSPI07G17770Wild cucumber (PI 183967)cmacpiB934
CmaCh08G004400Lsi02G024320Bottle gourd (USVL1VR-Ls)cmalsiB822
CmaCh08G004400Cp4.1LG17g07200Cucurbita pepo (Zucchini)cmacpeB917
CmaCh08G004400MELO3C015965.2Melon (DHL92) v3.6.1cmamedB930
CmaCh08G004400Cla97C09G168040Watermelon (97103) v2cmawmbB940
CmaCh08G004400Bhi09G000755Wax gourdcmawgoB1119
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G004400Cucumber (Chinese Long) v3cmacucB1062
CmaCh08G004400Cucumber (Chinese Long) v3cmacucB1084
CmaCh08G004400Wax gourdcmawgoB1087
CmaCh08G004400Cucurbita maxima (Rimu)cmacmaB293
CmaCh08G004400Cucurbita maxima (Rimu)cmacmaB382
CmaCh08G004400Cucurbita maxima (Rimu)cmacmaB440
CmaCh08G004400Cucumber (Gy14) v1cgycmaB0206
CmaCh08G004400Cucumber (Gy14) v1cgycmaB0608
CmaCh08G004400Cucurbita moschata (Rifu)cmacmoB896
CmaCh08G004400Cucurbita moschata (Rifu)cmacmoB905
CmaCh08G004400Cucurbita moschata (Rifu)cmacmoB913
CmaCh08G004400Wild cucumber (PI 183967)cmacpiB913
CmaCh08G004400Cucumber (Chinese Long) v2cmacuB894
CmaCh08G004400Melon (DHL92) v3.5.1cmameB854
CmaCh08G004400Watermelon (Charleston Gray)cmawcgB792
CmaCh08G004400Watermelon (97103) v1cmawmB862
CmaCh08G004400Cucurbita pepo (Zucchini)cmacpeB902
CmaCh08G004400Cucurbita pepo (Zucchini)cmacpeB924
CmaCh08G004400Bottle gourd (USVL1VR-Ls)cmalsiB831
CmaCh08G004400Cucumber (Gy14) v2cgybcmaB577
CmaCh08G004400Cucumber (Gy14) v2cgybcmaB973
CmaCh08G004400Silver-seed gourdcarcmaB0148
CmaCh08G004400Silver-seed gourdcarcmaB0792
CmaCh08G004400Silver-seed gourdcarcmaB1060
CmaCh08G004400Silver-seed gourdcarcmaB1136