CmaCh08G002230 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G002230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Sterile alpha motif (SAM) domain-containing protein
Location	Cma_Chr08 : 1249101 .. 1253932 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAGGTTAAAAAGGCAAAAGATTTTGGAGACGATCTGCGGTTCTCCTGTTCTTTCGATTTCTTCAGCCTCCGATTCATTCTTGAATTTTGTACGAGCACACTTGCAGATTTTGCTCTCGGAACAGGATTTAGGGTTAGGGTTGAGTTTTTGCGTCTCTCGTTTAGTTCTAAAGATGTATGCTGATCGATTGGATGCCGACACTCATAGGTCTATAAAGGACCGCCTCAATGGAAATTCCTCTGACCTTTCTGCCCGCCGGCGGCCGATTACTGGGAAGAGGTTCGTTGTCTTTTTTTTCCTATCTGTTTGGATTTTTGGGCAATTTTTGAGATGTAGGTAGTAATTGTTTTTGGGAATTTTTACTGTTGTTTGTGTTACTCTTAAATTTTTGTACTATGGTGGAGTCGCGAGCTAAGACATTTTGGTCGTGGAGTTTATCATTGGTTGAACTTTCTGGTTTTTGCGATTTTACTTAGACTGAAGGTGTTGCCTATTTTGGGTGTAACTTTGCTGTTCTTCTTGTTCGAGTTGTGTTTGGAATCTTGTAGATTGTATGTATTTAGAGCACCTTCAGCTGTTACAACTTCGATGGAACGCAGTGAGGACTGTTTGGTTACATTAAGCCATCAATCTTCTTTGGTGTATTTGTTATGTTTCTGTGCTTGTTGGTTTGGCTTCATGACTTTATGTGGTTTCCTAGCTTAAGTCTTGTTTTCTATCCAAGCAGGAGTTCCAAGATTATATGCAAAAGCTTTGTTACACATTTGTTATATAGCTTTAATGTGCAATTGGATTTTGGCAATGCCGAGAACTAACTTCGTGGATCTAGCATATATTATTTGTCAAAGATCTTGAATGGTTAGGCTTTTATGCTTATTTGGTGCTTCTCTAGGGTGTAAGTGGTTCGGGTATCTCGGTTTTTTTTGGCTAAAACAATACTGATTCAGGAGGGGAAAAAACTGAATGAAAATGGGCTTTCCTTGAAAGTTGAACTGACTGCTCAAACAAAAAGAAACTTGGGTGCAGTGTGCAACCAAATAAAAAACCAATTAAGACAAGAAAATCTAACACAACAAAGATATTCACAGTTTTAACTTATGTATAGTAGAATCGACCAACACATTTTAACCATACCAATAAAACCGGTTCCCGGTTTATTAAATTTTCTTTTCAGTTTTAAATTTGCTCCTCTAGTTCTCTAGGAACAGTCATTCTCTTATAGTATTCTAGCTTCTCAATGAAAGCCTCATTTTCCATCCAAGAAAAAGTGACCTTCAAGATCATGCTTGAGCATCGGTACTCATTCTTTACATATAATGATAGTGGACTTACCATGCTGGAAACTAATTTGATTGATACTAGCATAGATTATTTTATACAGCGTTTGAAGATTGTTGAAGCTTTTCTTGTATTTGGTGCTTACGAGTGTGCTTTCTTTCGTTGATTTTTAGACGCATGTTGTCTTGTTGCTTTCATAATTTAATTGAGATAGGAATTTGTAACTGATTTTTTTTTATAAGTTTAGGCTTTTGGTTTTCTGAAGTTGTCTTAATGATGTGGATGGCCGTCAATATTCATATACCTTTTTGTGAGAATATTTGATTCTCTTGTTAGCTGGACAGTTAATGGTCTACATGTTATTATTTGTTGAGTGCTCTGTATTCATTATATCATGCCGATACCATGTACATTCCAGGCAAAGACAAGATGACAAGTGGGAGCATGATCTCTACGAGAATGATGAACCACAAACTTCAAGTACGAATTGGGTGTAATTGTATCACACGTCTAAAACCCTTTTGGTTAGATGGGTCTAATCCACTTTATAAGCTCTTGATTATGTTCTATTGGCTTTAAAGATCGCAAAGTTGGTGCTCGAGATCTTCGCTTGAAGCTCCAAAAGAGAAGTCAACAGCAAAGTGGAAATTCATCCTTTTCAGGAGTTCGTGACCTACGTGAAAAGTTGTCTGGCACAATGAAGCCTCAAGCTGTGAATAGCGATCCACCAAAACTAAAATTGGATGTTTCAAAACCGACCAGGAAAAATGATTCTGTTGAAGTTCGCCCTTCAACCACTCAAAAAGTTGTAGCCAACCCTGCTACTAGGAAAAAGGATGCTCAGAAGGCAAGAAACTTCCATTTCTCTTATTTATTTTTTGTTTGTTATCTTTTTAAAGTTTTTATCAGAAAATATGCTTTCTGTCAAACGCACGATAGAGGTTGGTCACTTTAGCATTCAATTTTTGTATCTGGAAAACTTTCTTATCTGTGAAAATAATTTCTTTGAACGTTTAATCGAGTTAGTGCATCTGGTACAGTCTACATATTTCTTAATCCCTTTTGCTGCTTTGCTAATGAATTGCAGAGACGTCCAGCCAAATGCATGTTATGTCTCTACATTTTTAGTTGAATTAAAATTTAATCGAGTTGTAGTAATCAGACTTGGAATTACCGACCTTATGTTACAGTTGATGGGCTGAGTTACCATGCGAACAATTGAAAGTCTGACGTTTTGTTTTCTATAATTTGTCTTTTCTTGATTAACATGACTTTTGATGCAGAGTGATACGTCAGTGGATGACTTCCTGCAGTCCTTGGGCCTTGAAAAATATTCCATCACATTTCAAGCTGAGGAGGTATGAAAATCTTGTGTTTTCAAGGAGTGTAAGCTCCTTGCTTTCAAGCTTTCAGCTTAGCTTCCCTGAACTAATTACAACTTTGAACATCTTTCATATAGGTTGATATGACAGCGCTTGTACACATGGGTGACGAAGATCTCAAGGCTTTAGGAGTACCAATGGTAAACTTGCAAGACCTTGTTTTAATAAGTTTTTTTATTATATATGTTTTTGGCCATCTTTTATCTTTGCTACTTGCGTAGATATGTAGCTTATTTGATCTCACTATTTACCGTTTAGCATATATTTTATAAGAAACAACACCATTGACGTATGAAATTACAAAAGAGGAGGGAGAAGGAAGTTATAAGAGACTTCTCTAATTGGACGGAAGAGACATTTAATAAGAGTGAAATAGAGCTAACAATTTACACAAAACAAAACTAAGTGAATAATGATATCCATTAGGCGACCAAAAGGTTACTCCTTGCTTGCAAAAATCCTTTGATCACTCTCATTCCTAGTAATCCAAAGGAACGCTCGACAAAATTCAACCATGGGTGCTTTTCTTTCTTAAATGGATTGCCTTAGAGTGTAAGGCAAGGAAGTAGTTATGCATCGAGCGGAAAAGGAATTGACCAACCAAATGATTGAAGAATTTCCTTTTAAAAGAAAGATGCAAAGGAGCAAGTGTGGAACATGTGGTCTTGGGTCTATGTGGCGTACTCACAAAACGTGCACCAATTTGGAGAGGCATAGATAAAAGGCAATCACCTTGAAAAAAAATTGTTCCAAATGCTCTCTTGTATCAGATGACAAGAGTGAGCTATTTATGTTTCTTAAGCAACATTATTATTTGAATTCTAATATTTGAACCTATCACGAGTAATAACAGGATGGGTGTGGCCTTTAGAAAATAAAGTATTTGGTCAGTTGTTATCCAATCAAAACTAATAGCAAGGGAGTCTATGTAAGGCTCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGGCCCAACCTTATTGGCACACTCCCTTGTGTCCACCCCCTTTGGGGCTCAACCTCTTCGTTGACACATCGCCTAGTGCCTGGCTCTAATACCATTTGTAACAGTCCAAGCCTACCAGTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCAGGTTTCCCTTCAAGGTTTCTATAACGCGTCTTCTAGGGAGAGGTTTTCACGCCTTTATAAAAAATGCTTCGTTCTCCTCAACTGATGTGAGACCTCACAGTTTACGTGTAAACTCAACCAATGCAGGCTAGTTCTCTCACCTTGCTAACTGTGTACTCTAGTGCTGCAGTGCATATTCTATTATGGAGTTTTACCAAGAACAGAGTGGAACTAACATAGCTATTTGAAGTTCGAAACTCGCCTTAGTCAAGGTCTTTCTTCCAGACTGCGTATAAGATTTGTGGAAGAATCTTTTAAGTTTTCTGTAAAAGGACAGAAGATTCATTAAACCCCTTCATGAGAGAGAACTTAGAAATAAAAAGAATTCTTGTCAATGTCAACGATTCTCAATACCTTAGCAGATTCAATAAAGTAGCGCAACTCCCGTCTTGTTTGTTATCATTTTGTTCCCTCGTTTATTCATTTAATGCTTGGAATCACGAACCTCGTACTTAAGTTATCAGCTCTGATTTCAGGGACCAAGAAAGAAGATCCTGTTGGCATTGGAATCAAGAGTCTGAACCATGGAAAGTGAGTGGAGTAAACTCCTGTTCGCCAGTGTTTTATTTTATTATACCAGCTGTGATACTACTGTGAAGAACAAGTAGGGGCCGTCGGCCATTGTAACTCTGGTTTCCTCTTTTCACTTTTTTCTTTGGCTTCCATTTTTTCGCTGCTTGATGGTGAAGGACCTTAAAAATGTTTAGCTATGGATAGAAATATGGGATTCAGTATATATATATATAGCGGCTCAGCTGAGAGCAACTCTCTTTTGACTCACTTTCCATGCCCATCAGCGTTTGAGGTATTGAGGTCTCTCCTGCTTTTGTGGTGCCTTTCAGTGTTTCAATATTCCATACTTGTTATAAGCAGCACTGCAGAGTTTTTAGGCAATTTGAAATGTTAAAAACTAGTCATTTTGATATTTGTACTTCGAATTTTATTTCCTTTTCGTTGTATCATACTACTCGATGTCTAAATTTATTTTTTGTACTTTTAATTTCAC

mRNA sequence

AAGAGAGGTTAAAAAGGCAAAAGATTTTGGAGACGATCTGCGGTTCTCCTGTTCTTTCGATTTCTTCAGCCTCCGATTCATTCTTGAATTTTGTACGAGCACACTTGCAGATTTTGCTCTCGGAACAGGATTTAGGGTTAGGGTTGAGTTTTTGCGTCTCTCGTTTAGTTCTAAAGATGTATGCTGATCGATTGGATGCCGACACTCATAGGTCTATAAAGGACCGCCTCAATGGAAATTCCTCTGACCTTTCTGCCCGCCGGCGGCCGATTACTGGGAAGAGGCAAAGACAAGATGACAAGTGGGAGCATGATCTCTACGAGAATGATGAACCACAAACTTCAAATCGCAAAGTTGGTGCTCGAGATCTTCGCTTGAAGCTCCAAAAGAGAAGTCAACAGCAAAGTGGAAATTCATCCTTTTCAGGAGTTCGTGACCTACGTGAAAAGTTGTCTGGCACAATGAAGCCTCAAGCTGTGAATAGCGATCCACCAAAACTAAAATTGGATGTTTCAAAACCGACCAGGAAAAATGATTCTGTTGAAGTTCGCCCTTCAACCACTCAAAAAGTTGTAGCCAACCCTGCTACTAGGAAAAAGGATGCTCAGAAGAGTGATACGTCAGTGGATGACTTCCTGCAGTCCTTGGGCCTTGAAAAATATTCCATCACATTTCAAGCTGAGGAGGTTGATATGACAGCGCTTGTACACATGGGTGACGAAGATCTCAAGGCTTTAGGAGTACCAATGGGACCAAGAAAGAAGATCCTGTTGGCATTGGAATCAAGAGTCTGAACCATGGAAAGTGAGTGGAGTAAACTCCTGTTCGCCAGTGTTTTATTTTATTATACCAGCTGTGATACTACTGTGAAGAACAAGTAGGGGCCGTCGGCCATTGTAACTCTGGTTTCCTCTTTTCACTTTTTTCTTTGGCTTCCATTTTTTCGCTGCTTGATGGTGAAGGACCTTAAAAATGTTTAGCTATGGATAGAAATATGGGATTCAGTATATATATATATAGCGGCTCAGCTGAGAGCAACTCTCTTTTGACTCACTTTCCATGCCCATCAGCGTTTGAGGTATTGAGGTCTCTCCTGCTTTTGTGGTGCCTTTCAGTGTTTCAATATTCCATACTTGTTATAAGCAGCACTGCAGAGTTTTTAGGCAATTTGAAATGTTAAAAACTAGTCATTTTGATATTTGTACTTCGAATTTTATTTCCTTTTCGTTGTATCATACTACTCGATGTCTAAATTTATTTTTTGTACTTTTAATTTCAC

Coding sequence (CDS)

ATGTATGCTGATCGATTGGATGCCGACACTCATAGGTCTATAAAGGACCGCCTCAATGGAAATTCCTCTGACCTTTCTGCCCGCCGGCGGCCGATTACTGGGAAGAGGCAAAGACAAGATGACAAGTGGGAGCATGATCTCTACGAGAATGATGAACCACAAACTTCAAATCGCAAAGTTGGTGCTCGAGATCTTCGCTTGAAGCTCCAAAAGAGAAGTCAACAGCAAAGTGGAAATTCATCCTTTTCAGGAGTTCGTGACCTACGTGAAAAGTTGTCTGGCACAATGAAGCCTCAAGCTGTGAATAGCGATCCACCAAAACTAAAATTGGATGTTTCAAAACCGACCAGGAAAAATGATTCTGTTGAAGTTCGCCCTTCAACCACTCAAAAAGTTGTAGCCAACCCTGCTACTAGGAAAAAGGATGCTCAGAAGAGTGATACGTCAGTGGATGACTTCCTGCAGTCCTTGGGCCTTGAAAAATATTCCATCACATTTCAAGCTGAGGAGGTTGATATGACAGCGCTTGTACACATGGGTGACGAAGATCTCAAGGCTTTAGGAGTACCAATGGGACCAAGAAAGAAGATCCTGTTGGCATTGGAATCAAGAGTCTGA

Protein sequence

MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKVGARDLRLKLQKRSQQQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTRKNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMGPRKKILLALESRV

Homology

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BLAST of CmaCh08G002230 vs. Swiss-Prot
Match: USH1G_HUMAN (Usher syndrome type-1G protein OS=Homo sapiens GN=USH1G PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.0e-06
Identity = 24/64 (37.50%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 141 KDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMGPRKKILLA 200
           +D +   + ++ FL SL +E ++   + E++D+ AL+   D DL+++ VP+GPRKKIL A
Sbjct: 383 EDLEPETSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPRKKILGA 442

Query: 201 LESR 205
           +  R
Sbjct: 443 VRRR 446

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BLAST of CmaCh08G002230 vs. TrEMBL
Match: A0A0A0K9W5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G341210 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.8e-93
Identity = 180/205 (87.80%), Postives = 192/205 (93.66%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADRL+AD HRSIKDRLNGNSSDLSARRRPITGKRQR+DDKWEHDLYENDEPQTSNR+V
Sbjct: 1   MYADRLEADNHRSIKDRLNGNSSDLSARRRPITGKRQREDDKWEHDLYENDEPQTSNRRV 60

Query: 61  GARDLRLKLQKRSQQQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTRKND 120
           GARDLRLKLQK+SQQQSGN+ FSGVRDLREKLSGTMKPQA N+DPPK KL+V+K  RKND
Sbjct: 61  GARDLRLKLQKKSQQQSGNAPFSGVRDLREKLSGTMKPQAANNDPPKPKLEVTKAPRKND 120

Query: 121 SVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG 180
           ++E   S+TQK VA  ATRKK AQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG
Sbjct: 121 AIEAHTSSTQKAVAKSATRKKAAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG 180

Query: 181 DEDLKALGVPMGPRKKILLALESRV 206
           D+DLKALGVPMGPRKKILLALESRV
Sbjct: 181 DDDLKALGVPMGPRKKILLALESRV 205

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BLAST of CmaCh08G002230 vs. TrEMBL
Match: M5VLG2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011522mg PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.3e-71
Identity = 150/208 (72.12%), Postives = 170/208 (81.73%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADR +ADT RSIKDRLNG+  D S RRR I GKRQRQDDKWEHDLYE+++PQ SNRKV
Sbjct: 1   MYADREEADTKRSIKDRLNGSFRDNSGRRRQIAGKRQRQDDKWEHDLYEDNDPQVSNRKV 60

Query: 61  GARDLRLKLQKRS---QQQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTR 120
            ARDLRLKLQ++S     QSG  S SGVRDLREKLSGTM PQ VN+DPPK KL+ +KP R
Sbjct: 61  DARDLRLKLQRKSFKQSSQSGTRSLSGVRDLREKLSGTMVPQPVNADPPKTKLEAAKPVR 120

Query: 121 KNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALV 180
           ++ +V      T+KV  NPA+RKK +QK+  SVD+FL SL LEKYSITFQAEEVDMTALV
Sbjct: 121 RSTAVGASAQETKKVT-NPASRKKTSQKAGASVDEFLTSLDLEKYSITFQAEEVDMTALV 180

Query: 181 HMGDEDLKALGVPMGPRKKILLALESRV 206
           HM DEDLKALG+PMGPRKKILLALE+RV
Sbjct: 181 HMTDEDLKALGIPMGPRKKILLALETRV 207

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BLAST of CmaCh08G002230 vs. TrEMBL
Match: V4TYJ4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022271mg PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.2e-69
Identity = 149/207 (71.98%), Postives = 167/207 (80.68%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADR++A   +S+K+RLNGNS   S RRR ITGKRQRQDDKWEHDLY +DEP  SNR V
Sbjct: 1   MYADRVEAAAKQSVKERLNGNSVGDSTRRRSITGKRQRQDDKWEHDLYTDDEPNASNRIV 60

Query: 61  GARDLRLKLQKRSQQQ---SGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTR 120
           G RDLRLKLQK+S QQ   SG    SGVRDLREKLSGTM  Q VNSDPPK KL+ +K  R
Sbjct: 61  GVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLAR 120

Query: 121 KNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALV 180
           K+ +VE  P    K VA PA++KKD QK++TSVD FL+SLGLEKYSITFQAEEVDMTAL+
Sbjct: 121 KSVAVEA-PEPESKRVAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALL 180

Query: 181 HMGDEDLKALGVPMGPRKKILLALESR 205
           HM DEDLKALG+PMGPRKKILLALESR
Sbjct: 181 HMTDEDLKALGIPMGPRKKILLALESR 206

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BLAST of CmaCh08G002230 vs. TrEMBL
Match: A0A067JR58_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17525 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66
Identity = 144/207 (69.57%), Postives = 166/207 (80.19%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADR++A   RS+K+RLNGNS D S RRR ITGKRQRQDDKWEHDLYE+DEP  S RKV
Sbjct: 1   MYADRVEAAAKRSVKERLNGNSIDDSTRRRQITGKRQRQDDKWEHDLYEDDEPHASYRKV 60

Query: 61  GARDLRLKLQKRSQQQSGNS---SFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTR 120
            A+DLRLKLQ++S  Q+  +   S SG RDLREKLSGTM  Q VN+DPPK KL+ +KP R
Sbjct: 61  SAQDLRLKLQRKSLPQASQTVKGSVSGTRDLREKLSGTMNSQPVNADPPKRKLETAKPAR 120

Query: 121 KNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALV 180
           ++ +VE  P    K VAN ATR+K  QK+D S++ FL+SLGLEKY I+FQAEEVDMTALV
Sbjct: 121 RSVAVEA-PEPEIKKVANVATRQKSQQKTDASMEGFLRSLGLEKYIISFQAEEVDMTALV 180

Query: 181 HMGDEDLKALGVPMGPRKKILLALESR 205
           HM DEDLKALGVPMGPRKKILLALESR
Sbjct: 181 HMTDEDLKALGVPMGPRKKILLALESR 206

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BLAST of CmaCh08G002230 vs. TrEMBL
Match: A0A061DV46_THECC (Sterile alpha motif domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_002879 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.2e-66
Identity = 143/207 (69.08%), Postives = 165/207 (79.71%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADR++A   RS+K+RLNGNS+D S RR  ITGKR R+DDKWEHDLY++D PQ SNRKV
Sbjct: 1   MYADRVEAVGKRSVKERLNGNSADNSIRRHQITGKRLREDDKWEHDLYQDDLPQVSNRKV 60

Query: 61  GARDLRLKLQKRSQQ---QSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTR 120
            ARDLRLKLQ++S Q   QSG  +FSGVRDLREKLSGTM  Q +N DPPK K++ +KP R
Sbjct: 61  DARDLRLKLQRKSLQQVSQSGRGAFSGVRDLREKLSGTMNTQPLNVDPPKPKVETAKPAR 120

Query: 121 KNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALV 180
           K+ +VE       K  AN A RKK  QK+DTSV+ FLQSLG+EKY+I FQAEEVDMTALV
Sbjct: 121 KSVAVET-SEPEPKRAANMAARKKVQQKADTSVEGFLQSLGIEKYTILFQAEEVDMTALV 180

Query: 181 HMGDEDLKALGVPMGPRKKILLALESR 205
           HM DEDLKALG+PMGPRKKILLALE R
Sbjct: 181 HMTDEDLKALGIPMGPRKKILLALEPR 206

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BLAST of CmaCh08G002230 vs. TAIR10
Match: AT3G07170.1 (AT3G07170.1 Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-59
Identity = 124/207 (59.90%), Postives = 159/207 (76.81%), Query Frame = 1


Query: 1   MYADRLDADT--HRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNR 60
           MYAD+L+A++   + +KDR+NG S D+S R R +TGKRQRQDDKWEHDL+ +D+PQ SNR
Sbjct: 1   MYADKLEAESGSRKVVKDRINGGSGDISTRVRQVTGKRQRQDDKWEHDLFSSDKPQLSNR 60

Query: 61  KVGARDLRLKLQKRSQ-QQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTR 120
           +V  RDLRLKLQKR    QSG  + SGVRDLR++LSGTM  Q  NSDPPK K + ++P+ 
Sbjct: 61  RVDPRDLRLKLQKRHHGSQSGREAGSGVRDLRDQLSGTMNQQPKNSDPPKSKAEAARPSM 120

Query: 121 KNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALV 180
           K+ + E    T  +  ++ ATRKK +Q++D+SVD FL+SLGLEKYS  FQ EEVDM AL+
Sbjct: 121 KSVATE----TETRKTSSQATRKK-SQQADSSVDSFLESLGLEKYSTAFQVEEVDMDALM 180

Query: 181 HMGDEDLKALGVPMGPRKKILLALESR 205
           HM D+DLKA+ +PMGPRKKILLAL S+
Sbjct: 181 HMTDDDLKAMLIPMGPRKKILLALGSK 202

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BLAST of CmaCh08G002230 vs. TAIR10
Match: AT5G48680.1 (AT5G48680.1 Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-43
Identity = 116/209 (55.50%), Postives = 142/209 (67.94%), Query Frame = 1


Query: 1   MYADRLDADTH--RSIKDRLNGNSSDLSAR--RRPITGKRQRQDD-KWEHDLYEND-EPQ 60
           MY+D + A+T   ++ K+RLNG S D S+R  ++ +T KR RQDD KWEHDL+E+D EP+
Sbjct: 1   MYSDLVVAETKISKTFKNRLNGGSGDFSSRGKQQQVTRKRGRQDDDKWEHDLFEDDDEPR 60

Query: 61  TSNRKVGARDLRLKLQK-RSQQQSGNSSFS-GVRDLREKLSGTMKPQAVNSDPPKLKLDV 120
            S R+V  +DLRLKLQK R   Q G   FS  V DLR+KLS T+ PQ  NS     K + 
Sbjct: 61  LSKRRVDPKDLRLKLQKKRHGSQIGGRVFSVSVADLRDKLSRTVNPQTKNS-----KREA 120

Query: 121 SKPTRKNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVD 180
            +P  K  SV  +P T  +   N AT KKD Q++D SVD FL+SLGLEKYS  FQ EEVD
Sbjct: 121 VRPAIKKVSVGTKPET--RAAPNRAT-KKDPQQNDASVDSFLESLGLEKYSTAFQVEEVD 180

Query: 181 MTALVHMGDEDLKALGVPMGPRKKILLAL 202
           M AL HM D+DLKAL +PMGPRKKILLAL
Sbjct: 181 MDALRHMTDDDLKALLIPMGPRKKILLAL 201

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BLAST of CmaCh08G002230 vs. TAIR10
Match: AT1G70180.2 (AT1G70180.2 Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-12
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 149 SVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMGPRKKILLALES 204
           SVD FL S+GL KYS+ F+ EEVDMT +  M + DLK L +PMGPRKKIL A+ S
Sbjct: 402 SVDGFLNSIGLGKYSLAFKREEVDMTTIKQMKESDLKDLIIPMGPRKKILQAIAS 456

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BLAST of CmaCh08G002230 vs. NCBI nr
Match: gi|659116333|ref|XP_008458022.1| (PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 3.4e-93
Identity = 181/205 (88.29%), Postives = 191/205 (93.17%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADRL+AD HRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNR+V
Sbjct: 1   MYADRLEADNHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRRV 60

Query: 61  GARDLRLKLQKRSQQQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTRKND 120
           GARDLRLKLQK+SQQQSGN+ FSGVRDLREKLSGTMKPQA  +DPPK KL+V+K  RKND
Sbjct: 61  GARDLRLKLQKKSQQQSGNAPFSGVRDLREKLSGTMKPQAAKNDPPKPKLEVTKAPRKND 120

Query: 121 SVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG 180
           ++E  PSTTQK VA  ATRK  AQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG
Sbjct: 121 AIEAHPSTTQKAVAKSATRKNAAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG 180

Query: 181 DEDLKALGVPMGPRKKILLALESRV 206
           D+DLKALGVPMGPRKKILLALESRV
Sbjct: 181 DDDLKALGVPMGPRKKILLALESRV 205

[Close]

BLAST of CmaCh08G002230 vs. NCBI nr
Match: gi|449443732|ref|XP_004139631.1| (PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 9.8e-93
Identity = 180/205 (87.80%), Postives = 192/205 (93.66%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADRL+AD HRSIKDRLNGNSSDLSARRRPITGKRQR+DDKWEHDLYENDEPQTSNR+V
Sbjct: 1   MYADRLEADNHRSIKDRLNGNSSDLSARRRPITGKRQREDDKWEHDLYENDEPQTSNRRV 60

Query: 61  GARDLRLKLQKRSQQQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTRKND 120
           GARDLRLKLQK+SQQQSGN+ FSGVRDLREKLSGTMKPQA N+DPPK KL+V+K  RKND
Sbjct: 61  GARDLRLKLQKKSQQQSGNAPFSGVRDLREKLSGTMKPQAANNDPPKPKLEVTKAPRKND 120

Query: 121 SVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG 180
           ++E   S+TQK VA  ATRKK AQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG
Sbjct: 121 AIEAHTSSTQKAVAKSATRKKAAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG 180

Query: 181 DEDLKALGVPMGPRKKILLALESRV 206
           D+DLKALGVPMGPRKKILLALESRV
Sbjct: 181 DDDLKALGVPMGPRKKILLALESRV 205

[Close]

BLAST of CmaCh08G002230 vs. NCBI nr
Match: gi|645259639|ref|XP_008235457.1| (PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Prunus mume])

HSP 1 Score: 275.8 bits (704), Expect = 6.2e-71
Identity = 150/208 (72.12%), Postives = 170/208 (81.73%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADR +ADT RSIKDRLNG+  D S RRR I GKRQRQDDKWEHDLYE+++PQ SNRKV
Sbjct: 1   MYADREEADTKRSIKDRLNGSFRDNSGRRRQIAGKRQRQDDKWEHDLYEDNDPQVSNRKV 60

Query: 61  GARDLRLKLQKRS---QQQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTR 120
            ARDLRLKLQ++S     QSG  S SGVRDLREKLSGTM PQ VN+DPPK K++ +KP R
Sbjct: 61  DARDLRLKLQRKSFKQSSQSGTRSLSGVRDLREKLSGTMVPQPVNADPPKTKVEAAKPVR 120

Query: 121 KNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALV 180
           ++ +V      T+KV  NPA+RKK +QK+  SVD+FL SL LEKYSITFQAEEVDMTALV
Sbjct: 121 RSTAVGASAQETKKVT-NPASRKKTSQKAGASVDEFLTSLDLEKYSITFQAEEVDMTALV 180

Query: 181 HMGDEDLKALGVPMGPRKKILLALESRV 206
           HM DEDLKALG+PMGPRKKILLALESRV
Sbjct: 181 HMTDEDLKALGIPMGPRKKILLALESRV 207

[Close]

BLAST of CmaCh08G002230 vs. NCBI nr
Match: gi|595793547|ref|XP_007200522.1| (hypothetical protein PRUPE_ppa011522mg [Prunus persica])

HSP 1 Score: 275.8 bits (704), Expect = 6.2e-71
Identity = 150/208 (72.12%), Postives = 170/208 (81.73%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADR +ADT RSIKDRLNG+  D S RRR I GKRQRQDDKWEHDLYE+++PQ SNRKV
Sbjct: 1   MYADREEADTKRSIKDRLNGSFRDNSGRRRQIAGKRQRQDDKWEHDLYEDNDPQVSNRKV 60

Query: 61  GARDLRLKLQKRS---QQQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTR 120
            ARDLRLKLQ++S     QSG  S SGVRDLREKLSGTM PQ VN+DPPK KL+ +KP R
Sbjct: 61  DARDLRLKLQRKSFKQSSQSGTRSLSGVRDLREKLSGTMVPQPVNADPPKTKLEAAKPVR 120

Query: 121 KNDSVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALV 180
           ++ +V      T+KV  NPA+RKK +QK+  SVD+FL SL LEKYSITFQAEEVDMTALV
Sbjct: 121 RSTAVGASAQETKKVT-NPASRKKTSQKAGASVDEFLTSLDLEKYSITFQAEEVDMTALV 180

Query: 181 HMGDEDLKALGVPMGPRKKILLALESRV 206
           HM DEDLKALG+PMGPRKKILLALE+RV
Sbjct: 181 HMTDEDLKALGIPMGPRKKILLALETRV 207

[Close]

BLAST of CmaCh08G002230 vs. NCBI nr
Match: gi|694314592|ref|XP_009371834.1| (PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Pyrus x bretschneideri])

HSP 1 Score: 269.6 bits (688), Expect = 4.4e-69
Identity = 148/205 (72.20%), Postives = 168/205 (81.95%), Query Frame = 1


Query: 1   MYADRLDADTHRSIKDRLNGNSSDLSARRRPITGKRQRQDDKWEHDLYENDEPQTSNRKV 60
           MYADR +ADT  S KDRLNG   + S RRR I GKRQRQD KWEHDLY+ D+PQ SNRKV
Sbjct: 1   MYADREEADTKLSAKDRLNGGFREDSGRRRQIAGKRQRQDGKWEHDLYQ-DDPQVSNRKV 60

Query: 61  GARDLRLKLQKRSQQQSGNSSFSGVRDLREKLSGTMKPQAVNSDPPKLKLDVSKPTRKND 120
            ARDLRLKLQK+S ++SGN S SGVRDLREKLSGTM PQ +N+DPPK K++  KP R++ 
Sbjct: 61  DARDLRLKLQKKSFKKSGNRSLSGVRDLREKLSGTMNPQPMNTDPPKPKVEAGKPARRSI 120

Query: 121 SVEVRPSTTQKVVANPATRKKDAQKSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMG 180
           +V   P+T  K VANPA RKK +QK+ +SVD+FL SL LEKYSITFQAEEVDMTALVHM 
Sbjct: 121 AVGT-PATETKKVANPAPRKKASQKAGSSVDEFLTSLDLEKYSITFQAEEVDMTALVHMT 180

Query: 181 DEDLKALGVPMGPRKKILLALESRV 206
           DEDLKALG+PMGPRKKILLALESRV
Sbjct: 181 DEDLKALGIPMGPRKKILLALESRV 203

The following BLAST results are available for this feature:

BLAST of CmaCh08G002230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
USH1G_HUMAN	9.0e-06	37.50	Usher syndrome type-1G protein OS=Homo sapiens GN=USH1G PE=1 SV=1	[more]

BLAST of CmaCh08G002230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9W5_CUCSA	6.8e-93	87.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G341210 PE=4 SV=1	[more]
M5VLG2_PRUPE	4.3e-71	72.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011522mg PE=4 SV=1	[more]
V4TYJ4_9ROSI	5.2e-69	71.98	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022271mg PE=4 SV=1	[more]
A0A067JR58_JATCU	1.1e-66	69.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17525 PE=4 SV=1	[more]
A0A061DV46_THECC	4.2e-66	69.08	Sterile alpha motif domain-containing protein isoform 1 OS=Theobroma cacao GN=TC...	[more]

BLAST of CmaCh08G002230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07170.1	2.6e-59	59.90	Sterile alpha motif (SAM) domain-containing protein	[more]
AT5G48680.1	1.2e-43	55.50	Sterile alpha motif (SAM) domain-containing protein	[more]
AT1G70180.2	4.0e-12	61.82	Sterile alpha motif (SAM) domain-containing protein	[more]

BLAST of CmaCh08G002230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116333\|ref\|XP_008458022.1\|	3.4e-93	88.29	PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Cucumis melo]	[more]
gi\|449443732\|ref\|XP_004139631.1\|	9.8e-93	87.80	PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Cucumis sativus]	[more]
gi\|645259639\|ref\|XP_008235457.1\|	6.2e-71	72.12	PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Prunus mume]	[more]
gi\|595793547\|ref\|XP_007200522.1\|	6.2e-71	72.12	hypothetical protein PRUPE_ppa011522mg [Prunus persica]	[more]
gi\|694314592\|ref\|XP_009371834.1\|	4.4e-69	72.20	PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Pyrus x bretschne...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001660	SAM
IPR013761	SAM/pointed_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G002230.1	CmaCh08G002230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001660	Sterile alpha motif domain	PFAM	PF00536	SAM_1	coord: 145..202 score: 1.5
IPR001660	Sterile alpha motif domain	SMART	SM00454	SAM_4	coord: 142..205 score: 2.
IPR001660	Sterile alpha motif domain	PROFILE	PS50105	SAM_DOMAIN	coord: 145..205 score: 10
IPR013761	Sterile alpha motif/pointed domain	GENE3D	G3DSA:1.10.150.50		coord: 147..202 score: 1.9
IPR013761	Sterile alpha motif/pointed domain	unknown	SSF47769	SAM/Pointed domain	coord: 148..203 score: 1.55
None	No IPR available	PANTHER	PTHR23509	FAMILY NOT NAMED	coord: 78..204 score: 4.1
None	No IPR available	PANTHER	PTHR23509:SF1	SUBFAMILY NOT NAMED	coord: 78..204 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G002230	Cla014941	Watermelon (97103) v1	cmawmB856
CmaCh08G002230	MELO3C021054	Melon (DHL92) v3.5.1	cmameB826
CmaCh08G002230	ClCG09G008850	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G002230	CmoCh08G002220	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G002230	Lsi02G020980	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G002230	Cp4.1LG17g11160	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G002230	Cp4.1LG12g11120	Cucurbita pepo (Zucchini)	cmacpeB896
CmaCh08G002230	MELO3C021054.2	Melon (DHL92) v3.6.1	cmamedB924
CmaCh08G002230	Cla97C09G171640	Watermelon (97103) v2	cmawmbB940
CmaCh08G002230	Bhi09G001115	Wax gourd	cmawgoB1130
CmaCh08G002230	Carg05046	Silver-seed gourd	carcmaB0112

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G002230	CmaCh17G012700	Cucurbita maxima (Rimu)	cmacmaB374

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G002230	Cucurbita moschata (Rifu)	cmacmoB888
CmaCh08G002230	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G002230	Cucumber (Gy14) v2	cgybcmaB973
CmaCh08G002230	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G002230	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G002230	Cucumber (Gy14) v1	cgycmaB0144