CmaCh08G000390 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G000390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibosomal protein L23, component of cytosolic 80S ribosome and 60S large subunit
LocationCma_Chr08 : 204185 .. 206452 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACCCTAACTTTCGTGCCACCCAGAAACCCTAGAGCTCTGAAAGTGGCGTCATGCATATAAAATGTAGTGGCCATCCAAGAGGCCGCGGGAGAGACGCCGAAGTTCATCAGCAATGTCGAAGCGAGGTTCTCTTCTTCTTCATTACTCTTTGTTCTTACAGGCGTCTCATTGATTAAACTAAATTAAATCTGTGTTATTTTTTGTTCCATTTTGATTCCTATGCTCGAACTAACTTGAATGCTCCCACAGGAAGGGGAGGATCCGCCGGGAACAAATTCCGGATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCAGACAACACAGGAGCTAAGAATCTATACATCATTTCAGTGAAGGGGATCAAAGGTCGCCTCAATAGGTTGCCATCCGCATGTGTCGGCGATATGGTTATGGCCACCGTCAAGAAGGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGGTTTTGCATGTTTCCATCATTTTTTCAATTTTATTTCTTTTGGGTTTTTTTTTTTTCTTTTTTCTTTCCCTCCATTAGGCAGCGCTAAATTGTAAGTCATAAAGAGGCTGAAGGCCTTTTGTTATATTATCGTTCTTGTGTTCTTCTTAAATTGATCTAAGCTGCTTCTTTTTAGCTAATCTAAGTTGTAAGCGTATAGAAAGATAAGTTTACTGATTTTTTTTGTCCAAGCATATAAAAACTGCTGACTTTCATTCTTTAAATTGATTTATTGATTGGGTATATGGTGTGGTTGCAATCAGGAACGCTTCAGTTCTTTGGCTGTTGACATTATTTAGAGTTTAAAATTGTTCATTGTCTATGGTAAATAATTCCCGCATGATCTGAATCGAAGTAATTATAGCTACTGATGTTTGTTTTAAAATGAGTTGGTTTTTTTTTTTTTTCATACCTTGTTTTGCTTCAAAATTTCAAGAAGTAGAAGTCTTGAAATGGGTTACACTCTAAATAGTGCATAGAATGAATACACTGTTTATTTATACTATTTATCGTACTTATATTGCAATTGCAATATCCTACCTTCTTCAAAAATATTTGTTGTGTTTTCTGACATGAATGTATTGTATTTTTTTCTTTCCTCCAGATAACGCTGGTGTTATTGTCAATCCTAAGGGTGAAATGAAAGGTAATGATTATTTTTTTTTGAAATATTAATTTTTATTGTTGTATTTTTATACGATCAAGGCATTGGGTCGGTCTGAAAGGTAATCTCTTTCTGGTCTGGAAGTATAGAATGTTGTAAATATGTGATATGTCACGGTCACGGAAGATGGTAATCTTGAAGGTTTGCAAATTGTTTTTGGAGGATGGGGGGTGGATAAACCACGTTGAATAATCATTTGCTTATCATTTTTTTACAAGTTTCATCCTTTTTAAGAAAACATTCGACTTCTTAGCCAAATTTCAAAAACAAAACAAGAATTTATTTTTGTTTTCCTTTAAGTTTTCATTACTTTGTTTTTTAGAGCGCAATTAAAAAGTAGATGATATAACAAGGAACCTCATAGATGGAATGGGGGCTAATTGTTTTAACTTCATTGTTGAACAATTCACTGGTTTTAATTTCAGCCTCTGCCTAAGAAATATATTTAATGTATTATATCTTTAGGCAATATAGTTGATTGCAAATTAACTGATGGTCTTTCATGAAGCCTGGATACTCTTCATGATGAACCTGTATGTGCTTAAGTTGATAGAAATCCGTACCTATTTCTCTCTTACTGTACGATACTGGCACTGGTAGATTGAAGTATTTACAACGCTGTTTCCTTTGATTGCAGGTTCGGCTATTACCGGCCCCATCGGGAAGGAATGCGCTGATCTGTGGCCAAGAATTGCTAGTGCTGCTAATGCTATTGTGTGAGAATCATTATAGGTTGTACGATGTTTTAGGAGTGAAATTTTGCAATTTTCCTTCCAGGGTCTATTTTGTTTCCTTGGGTTTGCCTCTGCTATGTTAGACACACACAGATGCAAGCTTAGGTTTGAGGTTTCTTAATCTAAATGGATCACTCGAATTGCTGTTGAACGTTTTGCCAGTTCTATAGATACGAAGGACTCCTGTTTTTTTTAGTAAGTTTTTTGCTGTTCTTCATCCGCTCTTGTTGGATACAATGTTACCATTTTCTCCATGAGCTTGATGATGAATTCCCCATCAAACCCCATAACCAC

mRNA sequence

AAAACCCTAACTTTCGTGCCACCCAGAAACCCTAGAGCTCTGAAAGTGGCGTCATGCATATAAAATGTAGTGGCCATCCAAGAGGCCGCGGGAGAGACGCCGAAGTTCATCAGCAATGTCGAAGCGAGGAAGGGGAGGATCCGCCGGGAACAAATTCCGGATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCAGACAACACAGGAGCTAAGAATCTATACATCATTTCAGTGAAGGGGATCAAAGGTCGCCTCAATAGGTTGCCATCCGCATGTGTCGGCGATATGGTTATGGCCACCGTCAAGAAGGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAACGCTGGTGTTATTGTCAATCCTAAGGGTGAAATGAAAGGTTCGGCTATTACCGGCCCCATCGGGAAGGAATGCGCTGATCTGTGGCCAAGAATTGCTAGTGCTGCTAATGCTATTGTGTGAGAATCATTATAGGTTGTACGATGTTTTAGGAGTGAAATTTTGCAATTTTCCTTCCAGGGTCTATTTTGTTTCCTTGGGTTTGCCTCTGCTATGTTAGACACACACAGATGCAAGCTTAGGTTTGAGGTTTCTTAATCTAAATGGATCACTCGAATTGCTGTTGAACGTTTTGCCAGTTCTATAGATACGAAGGACTCCTGTTTTTTTTAGTAAGTTTTTTGCTGTTCTTCATCCGCTCTTGTTGGATACAATGTTACCATTTTCTCCATGAGCTTGATGATGAATTCCCCATCAAACCCCATAACCAC

Coding sequence (CDS)

ATGTCGAAGCGAGGAAGGGGAGGATCCGCCGGGAACAAATTCCGGATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCAGACAACACAGGAGCTAAGAATCTATACATCATTTCAGTGAAGGGGATCAAAGGTCGCCTCAATAGGTTGCCATCCGCATGTGTCGGCGATATGGTTATGGCCACCGTCAAGAAGGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAACGCTGGTGTTATTGTCAATCCTAAGGGTGAAATGAAAGGTTCGGCTATTACCGGCCCCATCGGGAAGGAATGCGCTGATCTGTGGCCAAGAATTGCTAGTGCTGCTAATGCTATTGTGTGA

Protein sequence

MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Homology
[Close]
BLAST of CmaCh08G000390 vs. Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 281.2 bits (718), Expect = 6.3e-75
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.1e-74
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.3e-68
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 139

[Close]
BLAST of CmaCh08G000390 vs. Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-63
Identity = 119/139 (85.61%), Postives = 129/139 (92.81%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAI 140
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]
BLAST of CmaCh08G000390 vs. Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 241.9 bits (616), Expect = 4.2e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAI 140
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]
BLAST of CmaCh08G000390 vs. TrEMBL
Match: I3S209_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. TrEMBL
Match: V7BH47_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G164200g PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. TrEMBL
Match: Q9ATF6_CASSA (Ribosomal protein L17 OS=Castanea sativa PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. TrEMBL
Match: M5WP13_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013088mg PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. TrEMBL
Match: M7ZJF7_TRIUA (60S ribosomal protein L23 OS=Triticum urartu GN=TRIUR3_02289 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-73
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. TAIR10
Match: AT1G04480.1 (AT1G04480.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 281.2 bits (718), Expect = 3.5e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. TAIR10
Match: AT2G33370.1 (AT2G33370.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 281.2 bits (718), Expect = 3.5e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. TAIR10
Match: AT3G04400.1 (AT3G04400.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 281.2 bits (718), Expect = 3.5e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. TAIR10
Match: ATCG00780.1 (ATCG00780.1 ribosomal protein L14)

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-12
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1 

Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIV 67

Query: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 141
           R  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct: 68  RTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122

[Close]
BLAST of CmaCh08G000390 vs. NCBI nr
Match: gi|470120643|ref|XP_004296407.1| (PREDICTED: 60S ribosomal protein L23 [Fragaria vesca subsp. vesca])

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. NCBI nr
Match: gi|568215140|ref|NP_001274965.1| (ribosomal protein L17-like protein [Solanum tuberosum])

HSP 1 Score: 282.7 bits (722), Expect = 3.4e-73
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. NCBI nr
Match: gi|629094248|gb|KCW60243.1| (hypothetical protein EUGRSUZ_H02959 [Eucalyptus grandis])

HSP 1 Score: 282.7 bits (722), Expect = 3.4e-73
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 72  MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 131

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 132 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 191

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 192 IGKECADLWPRIASAANAIV 211

[Close]
BLAST of CmaCh08G000390 vs. NCBI nr
Match: gi|470107295|ref|XP_004289983.1| (PREDICTED: 60S ribosomal protein L23-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 282.7 bits (722), Expect = 3.4e-73
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAV+VRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh08G000390 vs. NCBI nr
Match: gi|32400871|gb|AAP80667.1|AF479048_1 (ribosomal Pr 117, partial [Triticum aestivum])

HSP 1 Score: 282.7 bits (722), Expect = 3.4e-73
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 8   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 67

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 68  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 127

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 128 IGKECADLWPRIASAANAIV 147

The following BLAST results are available for this feature:
BLAST of CmaCh08G000390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL23_ARATH6.3e-7598.5760S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3[more]
RL23_TOBAC3.1e-7497.1460S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1[more]
RL23_TORRU3.3e-6890.7160S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1[more]
RL23_DANRE1.9e-6385.6160S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1[more]
RL23_BOVIN4.2e-6384.8960S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2[more]
BLAST of CmaCh08G000390 vs. TrEMBL
Match NameE-valueIdentityDescription
I3S209_LOTJA1.4e-73100.00Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
V7BH47_PHAVU1.4e-73100.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G164200g PE=3 SV=1[more]
Q9ATF6_CASSA1.4e-73100.00Ribosomal protein L17 OS=Castanea sativa PE=2 SV=1[more]
M5WP13_PRUPE1.4e-73100.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013088mg PE=3 SV=1[more]
M7ZJF7_TRIUA2.4e-7399.2960S ribosomal protein L23 OS=Triticum urartu GN=TRIUR3_02289 PE=3 SV=1[more]
BLAST of CmaCh08G000390 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04480.13.5e-7698.57 Ribosomal protein L14p/L23e family protein[more]
AT2G33370.13.5e-7698.57 Ribosomal protein L14p/L23e family protein[more]
AT3G04400.13.5e-7698.57 Ribosomal protein L14p/L23e family protein[more]
ATCG00780.14.7e-1233.61ATCG00780.1 ribosomal protein L14[more]
BLAST of CmaCh08G000390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|470120643|ref|XP_004296407.1|2.0e-73100.00PREDICTED: 60S ribosomal protein L23 [Fragaria vesca subsp. vesca][more]
gi|568215140|ref|NP_001274965.1|3.4e-7399.29ribosomal protein L17-like protein [Solanum tuberosum][more]
gi|629094248|gb|KCW60243.1|3.4e-7399.29hypothetical protein EUGRSUZ_H02959 [Eucalyptus grandis][more]
gi|470107295|ref|XP_004289983.1|3.4e-7398.57PREDICTED: 60S ribosomal protein L23-like [Fragaria vesca subsp. vesca][more]
gi|32400871|gb|AAP80667.1|AF479048_13.4e-7399.29ribosomal Pr 117, partial [Triticum aestivum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0006412 translation
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006554 lysine catabolic process
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0005694 chromosome
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G000390.1CmaCh08G000390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G000390Cucsa.348930Cucumber (Gy14) v1cgycmaB0955
CmaCh08G000390Cla007069Watermelon (97103) v1cmawmB879
CmaCh08G000390Csa6G088070Cucumber (Chinese Long) v2cmacuB903
CmaCh08G000390MELO3C022386Melon (DHL92) v3.5.1cmameB817
CmaCh08G000390ClCG06G001470Watermelon (Charleston Gray)cmawcgB805
CmaCh08G000390ClCG07G001340Watermelon (Charleston Gray)cmawcgB810
CmaCh08G000390CSPI06G07050Wild cucumber (PI 183967)cmacpiB923
CmaCh08G000390CmoCh08G000400Cucurbita moschata (Rifu)cmacmoB913
CmaCh08G000390Lsi05G010470Bottle gourd (USVL1VR-Ls)cmalsiB837
CmaCh08G000390Lsi09G017960Bottle gourd (USVL1VR-Ls)cmalsiB812
CmaCh08G000390Cp4.1LG17g09530Cucurbita pepo (Zucchini)cmacpeB914
CmaCh08G000390MELO3C022386.2Melon (DHL92) v3.6.1cmamedB915
CmaCh08G000390CsaV3_6G007430Cucumber (Chinese Long) v3cmacucB1072
CmaCh08G000390Cla97C06G110770Watermelon (97103) v2cmawmbB922
CmaCh08G000390CsGy6G007060Cucumber (Gy14) v2cgybcmaB871
CmaCh08G000390CsGy3G024990Cucumber (Gy14) v2cgybcmaB457
CmaCh08G000390Carg11543Silver-seed gourdcarcmaB0023
CmaCh08G000390Carg08944Silver-seed gourdcarcmaB1090
CmaCh08G000390Carg03791Silver-seed gourdcarcmaB1361
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh08G000390CmaCh17G013780Cucurbita maxima (Rimu)cmacmaB384
CmaCh08G000390CmaCh19G001130Cucurbita maxima (Rimu)cmacmaB466
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G000390Cucurbita moschata (Rifu)cmacmoB899
CmaCh08G000390Cucurbita pepo (Zucchini)cmacpeB905
CmaCh08G000390Melon (DHL92) v3.6.1cmamedB936
CmaCh08G000390Wax gourdcmawgoB1096