CmaCh07G006610 (gene) Cucurbita maxima (Rimu)

NameCmaCh07G006610
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA binding protein, putative
LocationCma_Chr07 : 2889785 .. 2894421 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCTCCGTACACCGGCAAGGCGTGATTCCCTGTCTATTTTGAGGTGTGGGTGTGTGTTGGTACCACATAAATATATCATTACAACCAACGATCTGCTCCCGACCAATGGAGGGAGGGACCAGCACACAATCTCCGGATCCTCCTTCCTTAAATTTAAATTATATTCAATAATAAAATAAAAAACAATCAACATTAGTTTAGAAAATAGGCAATAACTTTAAAGAAGCTCCATCTAATTATTTTGTTTTGAACCATAAGATAGGAGTAAACTTAAAATGAAATCTTCATTAAATTATCTGACATTTATTTCCCACATATGTTACAATAATAAACCCATATAATACAAGATTCTAATACATACAATTTAGACCACTCTTTCCGTGACTTATAATTCTCTTTTGCATGTGATTCGTCTTTCTTTCTATAATTTTCGTAACTTTATAATTACGCCAATATTATTCATTTTAGATTTTTTTTTTTTTTTTTTTGGGTATGAATTTTAAAATTTGAGATTTAAATGGAAAAAAAAAAAAAAAAAGACAAATTTTATTTTAGTAAAAAGATGAAATATTCTTGGAGAAAAGTCCAACAAAGTCGTTATCAAAATTAGGCTTAAAAGTATGTGAAAACCTGAATAAAATATGGAGAAAGAAAAAAGGAAAGGGCTAAGGATGTGAATTATATATATATGAAAGTACTTGGAATCTCGTGCACTGCTGGTGTTGCCTATTTCTGAAGCATATCTTTCACGAAACTTGAAGGAGATTGGCTGGAATCTGACCCCAAACATCGCAGAACTTGGGGGACGTTTCTGTTTCTGTTCATGTTCATGTTCCTGTTCTTGTTCATCTTCCCTTCTTTTTCACTGGGTAAACGAGTGAGAATCTTTTTGTTTCAGCTCATATTATCTTCCTCTTTCCTTTATTTATTCACTATTGCTTTGAGCGGAATGGTGGAGTCCTCCATGTTCCATCGATTTCTGTGCAAACGGATTAGGATTATTGGAGGATATGAAGTTTCTTCTTCTTCTTCTTCTTCGTCATCCTCCATTTCTTCCCTCCTTTTCATCTTAGATTTTGACTTCTTTTGCAGTGTTCTGAAATATTGAAGTTCATGCCAAGCTGCAATTCCATCTGCTGATCGGTCGTTTCGATTACGAGTTATTGTTCAGGTAATTCTATAGGTTTTTTCGAGTTTGCTTTCGTTTTTTTTCTTTTTGTTAGTCTTTCGATTGATCTGAGTTGAATTCGAGGTTCGATCCAACTTCGACATTGTAATCTGTAATTAGTGGTGATCTTCGTTTGGTTTTAATGAATTACAGAGTTTCCATGGAAGCGAATTCTTACCGAGTATAATGATTTTTTTTTGTTTGTTTGTTTGTTTGTTTGGGAGGAGCGCATTAAATGTTCGACGTAATGACTGAATGAGATAGGGAGTATTTTGGATAGCGAACAAAAGACCAATGAAACGTTATCACAAACTTTTATTCATTCGTACTGTACTCCTCTGTCCTCATTATAGAATTGCTACCCAATACATAATTCGTAATGCCGTTGAACAGTGAAATAGCATATATTATATATTTATTTCTTTATCAAACTCGAGACCTTTGGATTAATGATTTTTCAGGCAAGAATTTATTCCAGTAGCAGATTCTGAATTTCTGAGCCGCTTCCTTTTTTATTGATAGTCTTCTTTCTGTTTTTTTTTTCTCTTTATTCCTCAGACTAGATTCAAGACTGCATCAGCTAAAATCCCAATGGAAAAGCTGCCTGAGGTATACGAAAAGGAGTTCATGAGGATGGCTATGTTAAAGCATGAAGAAACATTCAAACAACAGGTTTTTCCCCAATTTTGATCTTCAATTTGCCTTTTATTCTTTTGGTTTTGAGTTAAAAACAGCCATGCAATTATTGAACTGTTAAATGATGCATCTCTTCATTTTTACCACTGGGTTTTTTCAATCTGTCCATCTTAACAAGATCTGATTCAACGGGATCCATAATTTTGATAGTCTTTCCCTTTTTCTTTTAATGGGTGCTTTGAATTTTTTGTGCCATGGCAATGGATGGATTGGATTGATAGTCATTTTCCGTTTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGTATCCTCTCCTAATCTTTTATTCATGTTCTAAGCTTGGGAAGGCATATTGTAGGTACATGAACTTCATCGGCTTTATCGAACCCAAAAGACATTGATGAAAAACATGGAGAAAAGCAGGCAAAGTGGATGGAATCCAGAGAGTTGGGATAAAAGGAATGAGATATGTTTCCGACAAATTTATAAACAGGATGCAAAAACTTACTATAGATCATCAACAACTCATTCGGTCAAAATAGATTTGGAACAGCCTGCTGAAGATGATCAAACAGAATCCAGCAGTGGAGCTCTGCAGACCATAAACGAACCCGAACTGGAACTTACTTTAGGGCCTTCGAGTTACAATACTTCAGATTCAGGAGTAACCCACTCTTCTTCTTCAACAGGGTCCAGCCATGAGGGAAGACGTAGGGATTCAAAGCAAGTTAAGGGTCAGGAAATGGAGGTGTTGGGAGTGATTGAAAATTCTTCAGGCTACCAAAATGGAAGTCATAGGGGTGAGAAGAAGATGATGCTGGATTACCCTCCTTGGATTTTTCAAGTTGTGAGCCCTAACATGACTTAATTTTCAAGGGAAAAAAATATTATTTGAATGAAATTATATGAGAAGATCTTTGATTGCTTCTCATTGACTAATCAACAGTGGAAATTGACGTTTAGTTGTTTTCAAGTTTCTTCTTCATCTCTTGCTGTATATGGAGACGTTGATGTGTAAATACTTTTGTATTTCTAGCTATGATTAATGTGAATGGAGAAATTGAACCCCTAAATCAAATTAAATTGTTAGTCTAATATCCAACTTTGCTGTTGTTTTGAACTAAATTATAATAGAGACGGGTGGGTTATGAGTTCATCAGACTTTCGTTGCGCCACTCTGATTTCCAACAATCTAAGTTCACTATTAGAAGATATTATGTCCACTTTTGACCTGATACCTAACATCGTTAGTCCAATAATTTTAAAACACATCTCCTAAATAAATATTTTTATACTCCTACAATAAATATTTTATTCTCCTCTTAAAATAACGTGGGATTTCATGCTAAGTTAAAAAAGTTATCGAAATATAAAAAAAGTTGATAGAGATTGCGATTTTAATCGAATTCATCTGGGTGGAAGAATAGTAGGGTGGGCAGAAGCTTTCGAACATTTTAATGGTTCCCGATCTTAGCTACAATCAAACCCAACCATTGCTATAGGCGATTTTTTTTAAAAAACCATGTTACTCATATCTTATGGCTTCAACATTTTATTACACTATAGTATTTAACTGACTTCAACGAGAATGTTGTATTCAGAGTTCAATACTTATTTTTATGGCACGTAATTAGTAAAAAAATTCTTAAAAAGTATGGTATAGCTTAAAACTTGTATGCTTAATTTTAGAAATTTTATAAATGAGTAGTCAAAAGGAAACATTGTATTAATAATAACAGTTAATTATTCTAAACAATTTATTAATTATTTAGATCATTTTCATGGAGTAATTATTATTCACCATTTTTTTAATATTTTAATTAAACGATGAGTATACTATAATTTATTAGTTCTCTAAAATTGGACACGTCAACCCATTAAGAAATTAACCGTGAATTGAAGACCTATTTCATATATCTCGAACTTAGATTAATTTACAAAATGTTGAAGATTATTGAGAGCCAGTCCAATTTAATTTGTTAATTTAATGATTTAGGGAATGAACAAGTAAAGCCTCACAAAACTCTGCAATTGCCATTCAGCCCCGCACCCTATCCATTCCTCTTCTACCGCCAACCCATACCAAAGCTCTGCAACAAAGGGCAAAATATTATACTTCGGAGGGAGGATCTGCCCGACCTCACCCGGCAATGTCCACTTTCTTGTAGCCGAAGCTCTCAATGCTCGGCCCTCGACCGTCCGAGTAAACCCACTCAGCGTTATCTTCAGTATCCACCACCAATGGAGCTTTCTTCTTCATTTGTTAAATTCTCATCCTCTACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAACTTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAGATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCATAAAACTTGGACGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAAACGACAATCCTGCAAAACAATTTGACACTCTCTTATATTTGGCCTTCCAGCATCCCTCATGCGAAAGAACAAAGGCACGACACATAA

mRNA sequence

ATGCTCCTCCGTACACCGGCAAGGCGTGATTCCCTGTCTATTTTGAGGTGTGGGTGTGTGTTGAACTTGGGGGACGTTTCTGTTTCTGTTCATGTTCATGTTCCTGTTCTTGTTCATCTTCCCTTCTTTTTCACTGGTTCATGCCAAGCTGCAATTCCATCTGCTGATCGGTCGTTTCGATTACGAGTTATTGTTCAGACTAGATTCAAGACTGCATCAGCTAAAATCCCAATGGAAAAGCTGCCTGAGGTATACGAAAAGGAGTTCATGAGGATGGCTATGTTAAAGCATGAAGAAACATTCAAACAACAGGTACATGAACTTCATCGGCTTTATCGAACCCAAAAGACATTGATGAAAAACATGGAGAAAAGCAGGCAAAGTGGATGGAATCCAGAGAGTTGGGATAAAAGGAATGAGATATGTTTCCGACAAATTTATAAACAGGATGCAAAAACTTACTATAGATCATCAACAACTCATTCGGTCAAAATAGATTTGGAACAGCCTGCTGAAGATGATCAAACAGAATCCAGCAGTGGAGCTCTGCAGACCATAAACGAACCCGAACTGGAACTTACTTTAGGGCCTTCGAGTTACAATACTTCAGATTCAGGAGTAACCCACTCTTCTTCTTCAACAGGGTCCAGCCATGAGGGAAGACGTAGGGATTCAAAGCAAGTTAAGGGTCAGGAAATGGAGGTGTTGGGAGTGATTGAAAATTCTTCAGGCTACCAAAATGGAAGTCATAGGGGTGAGAAGAAGATGATGCTGGATTACCCTCCTTGGATTTTTCAAGTTTGGAAATTGACGTTTAGTTGTTTTCAAGTTTCTTCTTCATCTCTTGCTGTATATGGAGACGTTGATGTCCCCGCACCCTATCCATTCCTCTTCTACCGCCAACCCATACCAAAGCTCTGCAACAAAGGGCAAAATATTATACTTCGGAGGGAGGATCTGCCCGACCTCACCCGGCAATGTCCACTTTCTTGTAGCCGAAGCTCTCAATGCTCGGCCCTCGACCGTCCGAGTAAACCCACTCAGCGTTATCTTCAGTATCCACCACCAATGGAGCTTTCTTCTTCATTTGTTAAATTCTCATCCTCTACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAACTTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAGATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCATAAAACTTGGACGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAAACGACAATCCTGCAAAACAATTTGACACTCTCTTATATTTGGCCTTCCAGCATCCCTCATGCGAAAGAACAAAGGCACGACACATAA

Coding sequence (CDS)

ATGCTCCTCCGTACACCGGCAAGGCGTGATTCCCTGTCTATTTTGAGGTGTGGGTGTGTGTTGAACTTGGGGGACGTTTCTGTTTCTGTTCATGTTCATGTTCCTGTTCTTGTTCATCTTCCCTTCTTTTTCACTGGTTCATGCCAAGCTGCAATTCCATCTGCTGATCGGTCGTTTCGATTACGAGTTATTGTTCAGACTAGATTCAAGACTGCATCAGCTAAAATCCCAATGGAAAAGCTGCCTGAGGTATACGAAAAGGAGTTCATGAGGATGGCTATGTTAAAGCATGAAGAAACATTCAAACAACAGGTACATGAACTTCATCGGCTTTATCGAACCCAAAAGACATTGATGAAAAACATGGAGAAAAGCAGGCAAAGTGGATGGAATCCAGAGAGTTGGGATAAAAGGAATGAGATATGTTTCCGACAAATTTATAAACAGGATGCAAAAACTTACTATAGATCATCAACAACTCATTCGGTCAAAATAGATTTGGAACAGCCTGCTGAAGATGATCAAACAGAATCCAGCAGTGGAGCTCTGCAGACCATAAACGAACCCGAACTGGAACTTACTTTAGGGCCTTCGAGTTACAATACTTCAGATTCAGGAGTAACCCACTCTTCTTCTTCAACAGGGTCCAGCCATGAGGGAAGACGTAGGGATTCAAAGCAAGTTAAGGGTCAGGAAATGGAGGTGTTGGGAGTGATTGAAAATTCTTCAGGCTACCAAAATGGAAGTCATAGGGGTGAGAAGAAGATGATGCTGGATTACCCTCCTTGGATTTTTCAAGTTTGGAAATTGACGTTTAGTTGTTTTCAAGTTTCTTCTTCATCTCTTGCTGTATATGGAGACGTTGATGTCCCCGCACCCTATCCATTCCTCTTCTACCGCCAACCCATACCAAAGCTCTGCAACAAAGGGCAAAATATTATACTTCGGAGGGAGGATCTGCCCGACCTCACCCGGCAATGTCCACTTTCTTGTAGCCGAAGCTCTCAATGCTCGGCCCTCGACCGTCCGAGTAAACCCACTCAGCGTTATCTTCAGTATCCACCACCAATGGAGCTTTCTTCTTCATTTGTTAAATTCTCATCCTCTACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAACTTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAGATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCATAAAACTTGGACGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAAACGACAATCCTGCAAAACAATTTGACACTCTCTTATATTTGGCCTTCCAGCATCCCTCATGCGAAAGAACAAAGGCACGACACATAA

Protein sequence

MLLRTPARRDSLSILRCGCVLNLGDVSVSVHVHVPVLVHLPFFFTGSCQAAIPSADRSFRLRVIVQTRFKTASAKIPMEKLPEVYEKEFMRMAMLKHEETFKQQVHELHRLYRTQKTLMKNMEKSRQSGWNPESWDKRNEICFRQIYKQDAKTYYRSSTTHSVKIDLEQPAEDDQTESSSGALQTINEPELELTLGPSSYNTSDSGVTHSSSSTGSSHEGRRRDSKQVKGQEMEVLGVIENSSGYQNGSHRGEKKMMLDYPPWIFQVWKLTFSCFQVSSSSLAVYGDVDVPAPYPFLFYRQPIPKLCNKGQNIILRREDLPDLTRQCPLSCSRSSQCSALDRPSKPTQRYLQYPPPMELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNAIKLGRTSTCWKPNKPLDTPLSPPIVMETTILQNNLTLSYIWPSSIPHAKEQRHDT
BLAST of CmaCh07G006610 vs. Swiss-Prot
Match: RNC1_ARATH (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana GN=RNC1 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-30
Identity = 82/131 (62.60%), Postives = 94/131 (71.76%), Query Frame = 1

Query: 360 SSSFVKFSSST--NYSFSSSFTPFIVKLHP--NSPNFPNPTSGDLRIFAVAVDPQQELPK 419
           SSS ++  SS+    SFSSS + F  K         F N     LRI A      Q LP+
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSKTQSILTKSRFQN-----LRICASVTAETQGLPR 68

Query: 420 NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 479
           ++PQRLLKELA+RK AT PKKKVPP+R+ILRPPLDDKKLAERFLNSPQL+LKSFPLLSSC
Sbjct: 69  DSPQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSC 128

Query: 480 LPSSRLNNAIK 487
           LPSS+LNNA K
Sbjct: 129 LPSSKLNNADK 134

BLAST of CmaCh07G006610 vs. Swiss-Prot
Match: RNC1_MAIZE (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays GN=RNC1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-22
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = 1

Query: 377 SFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVD------PQQELPKNNPQRLLKELAERKR 436
           + TP    LH +S          +R+ AVA D      P  E P N+P RLL+ELA+RK+
Sbjct: 12  TLTPLPFSLHSSSRR--------VRVLAVAADQTPPPAPPSE-PANSPSRLLRELAQRKK 71

Query: 437 ATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNAIKLGRT 496
           A SPKKK PPRR+IL+PPLDD++L  RFL+SPQL+LK+ PLLSSCLPS+ L+ A +    
Sbjct: 72  AVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMD 131

Query: 497 STCWKPNKPLDTPLSP 507
               +  + L  PL+P
Sbjct: 132 EYLLEAKQALGYPLAP 138

BLAST of CmaCh07G006610 vs. Swiss-Prot
Match: RNC1_ORYSJ (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica GN=RNC1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.1e-22
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 1

Query: 400 LRIFAVAVD---------PQQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLD 459
           +R+ AVA D              P N+P RLL+ELAERK+A SPKKK PPRR+IL+PPLD
Sbjct: 29  VRVLAVAADHTPPPPPSPSSPPEPANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLD 88

Query: 460 DKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNAIKLGRTSTCWKPNKPLDTPLSP 507
           D++L +RFL+SPQL+LK+ PLLSSCLPS+ L+ A +        +  + L  PL+P
Sbjct: 89  DERLTQRFLSSPQLSLKALPLLSSCLPSAPLSAADRTWMDEYLLEAKQALGYPLAP 144

BLAST of CmaCh07G006610 vs. TrEMBL
Match: A0A0A0KIH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494990 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.0e-68
Identity = 146/197 (74.11%), Postives = 166/197 (84.26%), Query Frame = 1

Query: 78  MEKLPEVYEKEFMRMAMLKHEETFKQQVHELHRLYRTQKTLMKNMEKSRQSGWNPESWDK 137
           MEKLP+ YEKE+MRMAMLKHEETFKQQV ELHRLYRTQKTLMKN+EKSR++    ESWDK
Sbjct: 1   MEKLPKAYEKEYMRMAMLKHEETFKQQVQELHRLYRTQKTLMKNVEKSRET----ESWDK 60

Query: 138 RNEICFRQIYKQDAKTYYRSSTTHSVKIDLEQPAEDDQTESSSGALQTINEPELELTLGP 197
           RNEICFRQIY+QDAK YYRS  T + K+D+EQPAED+   +++GA Q INE ELELTLGP
Sbjct: 61  RNEICFRQIYEQDAKNYYRS--TRTTKLDMEQPAEDEPETNNNGARQIINETELELTLGP 120

Query: 198 SSYNTSDSG-VTHSSSSTGSSHEGRRRDSKQVKGQEMEVLGVIENSSGYQNGSHRGEKKM 257
           SSYNTSDSG  T+SSSSTGSSH+ R  D+KQVKGQEM  LGV ENSSG QNG++RGEKK 
Sbjct: 121 SSYNTSDSGTTTYSSSSTGSSHDRRCTDTKQVKGQEMAALGVTENSSGCQNGNNRGEKK- 180

Query: 258 MLDYPPWIFQVWKLTFS 274
           MLDYPPW+FQV  L  +
Sbjct: 181 MLDYPPWLFQVVSLNMT 190

BLAST of CmaCh07G006610 vs. TrEMBL
Match: A0A0A0KGG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494980 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 9.3e-57
Identity = 120/150 (80.00%), Postives = 129/150 (86.00%), Query Frame = 1

Query: 357 MELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKN 416
           MELSSSFVK SS +NYSFSSS TPFIVK+HPN P FPNP+S +LR+FAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60

Query: 417 NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 476
           NPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDK+LAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120

Query: 477 PSSRLNNAIKLGRTSTCWKPNKPLDTPLSP 507
           PSSRLNNA K        +  + L  PL P
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEP 150

BLAST of CmaCh07G006610 vs. TrEMBL
Match: W9RN44_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023254 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.4e-44
Identity = 100/150 (66.67%), Postives = 120/150 (80.00%), Query Frame = 1

Query: 357 MELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKN 416
           MELSSSF    + +NYSFSSSF+ F +++   + N   PTS +LRIFAVAVDPQQ+LP+N
Sbjct: 1   MELSSSFTNLPNPSNYSFSSSFSTFPIRISLKTLNPKTPTSRNLRIFAVAVDPQQDLPRN 60

Query: 417 NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 476
           +PQRLLKELAERK+ATSPKKKVPP+R++LRPPLDDK+LAERFLNSPQL+LKSFPLLSSCL
Sbjct: 61  SPQRLLKELAERKKATSPKKKVPPKRFVLRPPLDDKRLAERFLNSPQLSLKSFPLLSSCL 120

Query: 477 PSSRLNNAIKLGRTSTCWKPNKPLDTPLSP 507
           PSSRLNNA +        +  + L  PL P
Sbjct: 121 PSSRLNNADQTWIDEYLLEAKQALGYPLEP 150

BLAST of CmaCh07G006610 vs. TrEMBL
Match: W9QX70_9ROSA (Ribonuclease 3 OS=Morus notabilis GN=L484_005920 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.4e-44
Identity = 100/150 (66.67%), Postives = 120/150 (80.00%), Query Frame = 1

Query: 357 MELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKN 416
           MELSSSF    + +NYSFSSSF+ F +++   + N   PTS +LRIFAVAVDPQQ+LP+N
Sbjct: 1   MELSSSFTNLPNPSNYSFSSSFSTFPIRISLKTLNPKTPTSRNLRIFAVAVDPQQDLPRN 60

Query: 417 NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 476
           +PQRLLKELAERK+ATSPKKKVPP+R++LRPPLDDK+LAERFLNSPQL+LKSFPLLSSCL
Sbjct: 61  SPQRLLKELAERKKATSPKKKVPPKRFVLRPPLDDKRLAERFLNSPQLSLKSFPLLSSCL 120

Query: 477 PSSRLNNAIKLGRTSTCWKPNKPLDTPLSP 507
           PSSRLNNA +        +  + L  PL P
Sbjct: 121 PSSRLNNADQTWIDEYLLEAKQALGYPLEP 150

BLAST of CmaCh07G006610 vs. TrEMBL
Match: M5W445_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004052mg PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.9e-42
Identity = 98/153 (64.05%), Postives = 118/153 (77.12%), Query Frame = 1

Query: 357 MELSSSFVKFSSST---NYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQEL 416
           M+LSSSF++ S+ +   NYSFSSSF+ F  ++   +P    P S +  + AVAVDPQQEL
Sbjct: 1   MDLSSSFIQVSNPSTYNNYSFSSSFSQFPTQIRLKTPKLSFPNSRNFHVLAVAVDPQQEL 60

Query: 417 PKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLS 476
           PKN+PQRLLKEL+ERKRATSPKKKVPP+R+ILRPPLDDK+LA+RFLNSPQL+LKSFPLLS
Sbjct: 61  PKNSPQRLLKELSERKRATSPKKKVPPKRFILRPPLDDKRLAQRFLNSPQLSLKSFPLLS 120

Query: 477 SCLPSSRLNNAIKLGRTSTCWKPNKPLDTPLSP 507
           SCLPSSRLNNA K        +  + L  PL P
Sbjct: 121 SCLPSSRLNNADKAWIEEYMLEAKQALGYPLEP 153

BLAST of CmaCh07G006610 vs. TAIR10
Match: AT4G37510.1 (AT4G37510.1 Ribonuclease III family protein)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-31
Identity = 82/131 (62.60%), Postives = 94/131 (71.76%), Query Frame = 1

Query: 360 SSSFVKFSSST--NYSFSSSFTPFIVKLHP--NSPNFPNPTSGDLRIFAVAVDPQQELPK 419
           SSS ++  SS+    SFSSS + F  K         F N     LRI A      Q LP+
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSKTQSILTKSRFQN-----LRICASVTAETQGLPR 68

Query: 420 NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 479
           ++PQRLLKELA+RK AT PKKKVPP+R+ILRPPLDDKKLAERFLNSPQL+LKSFPLLSSC
Sbjct: 69  DSPQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSC 128

Query: 480 LPSSRLNNAIK 487
           LPSS+LNNA K
Sbjct: 129 LPSSKLNNADK 134

BLAST of CmaCh07G006610 vs. TAIR10
Match: AT5G67390.1 (AT5G67390.1 unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-11
Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 1

Query: 78  MEKLPEVYEKEFMRMAMLKHEETFKQQVHELHRLYRTQKTLMKNMEKSRQSGWNPESWDK 137
           MEKL   Y+K+ M+MAMLKHEETFKQQV+ELHRLY+ QK LMKNME ++ +        K
Sbjct: 1   MEKLLNPYDKQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINKFT-------TK 60

Query: 138 RNEICFRQIYKQDAKTYYRSSTTHSVKIDLEQPAEDDQTESSSGALQTINEPELELTLGP 197
            N +           T+ R      V  ++++PA        +  ++ ++E E+ELTLGP
Sbjct: 61  NNHV------NSGLGTFIR-----RVDNEIDRPA---NFSGGNNNIEIMDESEIELTLGP 120

Query: 198 SSY--------NTSDSGVTHSSSSTGSSHEGRRRDSKQVKG 231
           S Y        N      +      GS + GRR  S    G
Sbjct: 121 SCYGGDEMMRMNKKKKKNSLPEMMDGSLNSGRRSFSSSSTG 140

BLAST of CmaCh07G006610 vs. TAIR10
Match: AT1G26620.1 (AT1G26620.1 Plant protein of unknown function (DUF863))

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-06
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1

Query: 85  YEKEFMRMAMLKHEETFKQQVHELHRLYRTQKTLMKNME 124
           YEK+FM+  ML+HE  FK QVHELHRLYR QK L++ ++
Sbjct: 13  YEKDFMKHTMLEHEAVFKNQVHELHRLYRVQKNLVEEVK 51

BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|659079633|ref|XP_008440360.1| (PREDICTED: uncharacterized protein LOC103484836 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 6.1e-70
Identity = 152/198 (76.77%), Postives = 171/198 (86.36%), Query Frame = 1

Query: 78  MEKLPEVYEKEFMRMAMLKHEETFKQQVHELHRLYRTQKTLMKNMEKSRQSGWNPESWDK 137
           MEKLP+ YEKE+MRMAMLKHEETFKQQVHELHRLYRTQKTLMKN+EKSR++    ESWDK
Sbjct: 1   MEKLPKAYEKEYMRMAMLKHEETFKQQVHELHRLYRTQKTLMKNVEKSRET----ESWDK 60

Query: 138 RNEICFRQIYKQDAKTYYRSSTTHSVKIDLEQPAEDDQTESSSGALQTINEPELELTLGP 197
           RNEICFRQIY+QDAK YYRS  TH+ K+D+EQPAE D+ E+++GA Q INE ELELTLGP
Sbjct: 61  RNEICFRQIYEQDAKNYYRS--THTTKLDMEQPAE-DEPETNNGAPQIINETELELTLGP 120

Query: 198 SSYNTSDSG-VTHSSSSTGSSHEGRR-RDSKQVKGQEMEVLGVIENSSGYQNGSHRGEKK 257
           SSYNTSDSG  T+SSSSTGSSHEGRR  D+KQVKGQEM  LGV ENSSG QNG++RGEKK
Sbjct: 121 SSYNTSDSGTTTYSSSSTGSSHEGRRCTDTKQVKGQEMAALGVTENSSGCQNGNNRGEKK 180

Query: 258 MMLDYPPWIFQVWKLTFS 274
            MLDYPPW+FQV  L  +
Sbjct: 181 -MLDYPPWLFQVVSLNMT 190

BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|778718594|ref|XP_004141880.2| (PREDICTED: uncharacterized protein LOC101207586 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 5.8e-68
Identity = 146/197 (74.11%), Postives = 166/197 (84.26%), Query Frame = 1

Query: 78  MEKLPEVYEKEFMRMAMLKHEETFKQQVHELHRLYRTQKTLMKNMEKSRQSGWNPESWDK 137
           MEKLP+ YEKE+MRMAMLKHEETFKQQV ELHRLYRTQKTLMKN+EKSR++    ESWDK
Sbjct: 1   MEKLPKAYEKEYMRMAMLKHEETFKQQVQELHRLYRTQKTLMKNVEKSRET----ESWDK 60

Query: 138 RNEICFRQIYKQDAKTYYRSSTTHSVKIDLEQPAEDDQTESSSGALQTINEPELELTLGP 197
           RNEICFRQIY+QDAK YYRS  T + K+D+EQPAED+   +++GA Q INE ELELTLGP
Sbjct: 61  RNEICFRQIYEQDAKNYYRS--TRTTKLDMEQPAEDEPETNNNGARQIINETELELTLGP 120

Query: 198 SSYNTSDSG-VTHSSSSTGSSHEGRRRDSKQVKGQEMEVLGVIENSSGYQNGSHRGEKKM 257
           SSYNTSDSG  T+SSSSTGSSH+ R  D+KQVKGQEM  LGV ENSSG QNG++RGEKK 
Sbjct: 121 SSYNTSDSGTTTYSSSSTGSSHDRRCTDTKQVKGQEMAALGVTENSSGCQNGNNRGEKK- 180

Query: 258 MLDYPPWIFQVWKLTFS 274
           MLDYPPW+FQV  L  +
Sbjct: 181 MLDYPPWLFQVVSLNMT 190

BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|659079631|ref|XP_008440359.1| (PREDICTED: uncharacterized protein LOC103484834 [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56
Identity = 124/151 (82.12%), Postives = 130/151 (86.09%), Query Frame = 1

Query: 357 MELSSSFVKFSS-STNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPK 416
           MELSSSFVK SS S NYSFSSS TPFIVK+HPN P FPNP+SG+LRIFAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 417 NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 476
           NNPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 477 LPSSRLNNAIKLGRTSTCWKPNKPLDTPLSP 507
           LPSSRLNNA K        +  + L  PL P
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDP 151

BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|449448248|ref|XP_004141878.1| (PREDICTED: uncharacterized protein LOC101207336 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-56
Identity = 120/150 (80.00%), Postives = 129/150 (86.00%), Query Frame = 1

Query: 357 MELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKN 416
           MELSSSFVK SS +NYSFSSS TPFIVK+HPN P FPNP+S +LR+FAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60

Query: 417 NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 476
           NPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDK+LAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120

Query: 477 PSSRLNNAIKLGRTSTCWKPNKPLDTPLSP 507
           PSSRLNNA K        +  + L  PL P
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEP 150

BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|703129200|ref|XP_010104304.1| (hypothetical protein L484_023254 [Morus notabilis])

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-44
Identity = 100/150 (66.67%), Postives = 120/150 (80.00%), Query Frame = 1

Query: 357 MELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKN 416
           MELSSSF    + +NYSFSSSF+ F +++   + N   PTS +LRIFAVAVDPQQ+LP+N
Sbjct: 1   MELSSSFTNLPNPSNYSFSSSFSTFPIRISLKTLNPKTPTSRNLRIFAVAVDPQQDLPRN 60

Query: 417 NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 476
           +PQRLLKELAERK+ATSPKKKVPP+R++LRPPLDDK+LAERFLNSPQL+LKSFPLLSSCL
Sbjct: 61  SPQRLLKELAERKKATSPKKKVPPKRFVLRPPLDDKRLAERFLNSPQLSLKSFPLLSSCL 120

Query: 477 PSSRLNNAIKLGRTSTCWKPNKPLDTPLSP 507
           PSSRLNNA +        +  + L  PL P
Sbjct: 121 PSSRLNNADQTWIDEYLLEAKQALGYPLEP 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RNC1_ARATH3.6e-3062.60Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th... [more]
RNC1_MAIZE1.6e-2247.79Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays GN=RN... [more]
RNC1_ORYSJ8.1e-2250.86Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s... [more]
Match NameE-valueIdentityDescription
A0A0A0KIH1_CUCSA4.0e-6874.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494990 PE=4 SV=1[more]
A0A0A0KGG7_CUCSA9.3e-5780.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494980 PE=4 SV=1[more]
W9RN44_9ROSA2.4e-4466.67Uncharacterized protein OS=Morus notabilis GN=L484_023254 PE=4 SV=1[more]
W9QX70_9ROSA2.4e-4466.67Ribonuclease 3 OS=Morus notabilis GN=L484_005920 PE=4 SV=1[more]
M5W445_PRUPE4.9e-4264.05Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004052mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G37510.12.1e-3162.60 Ribonuclease III family protein[more]
AT5G67390.11.4e-1137.27 unknown protein[more]
AT1G26620.11.3e-0661.54 Plant protein of unknown function (DUF863)[more]
Match NameE-valueIdentityDescription
gi|659079633|ref|XP_008440360.1|6.1e-7076.77PREDICTED: uncharacterized protein LOC103484836 [Cucumis melo][more]
gi|778718594|ref|XP_004141880.2|5.8e-6874.11PREDICTED: uncharacterized protein LOC101207586 [Cucumis sativus][more]
gi|659079631|ref|XP_008440359.1|1.0e-5682.12PREDICTED: uncharacterized protein LOC103484834 [Cucumis melo][more]
gi|449448248|ref|XP_004141878.1|1.3e-5680.00PREDICTED: uncharacterized protein LOC101207336 [Cucumis sativus][more]
gi|703129200|ref|XP_010104304.1|3.4e-4466.67hypothetical protein L484_023254 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006396 RNA processing
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G006610.1CmaCh07G006610.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11207RIBONUCLEASE IIIcoord: 357..484
score: 2.7
NoneNo IPR availablePANTHERPTHR11207:SF4SUBFAMILY NOT NAMEDcoord: 357..484
score: 2.7

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh07G006610CmaCh03G009350Cucurbita maxima (Rimu)cmacmaB523
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G006610Cucumber (Chinese Long) v3cmacucB1006
CmaCh07G006610Cucumber (Chinese Long) v3cmacucB1022
CmaCh07G006610Watermelon (97103) v2cmawmbB902
CmaCh07G006610Watermelon (97103) v2cmawmbB906
CmaCh07G006610Wax gourdcmawgoB1051
CmaCh07G006610Wax gourdcmawgoB1084
CmaCh07G006610Cucurbita maxima (Rimu)cmacmaB071
CmaCh07G006610Cucurbita maxima (Rimu)cmacmaB206
CmaCh07G006610Cucurbita maxima (Rimu)cmacmaB436
CmaCh07G006610Cucumber (Gy14) v1cgycmaB0968
CmaCh07G006610Cucumber (Gy14) v1cgycmaB1096
CmaCh07G006610Cucurbita moschata (Rifu)cmacmoB841
CmaCh07G006610Cucurbita moschata (Rifu)cmacmoB845
CmaCh07G006610Wild cucumber (PI 183967)cmacpiB866
CmaCh07G006610Wild cucumber (PI 183967)cmacpiB869
CmaCh07G006610Wild cucumber (PI 183967)cmacpiB884
CmaCh07G006610Cucumber (Chinese Long) v2cmacuB849
CmaCh07G006610Cucumber (Chinese Long) v2cmacuB852
CmaCh07G006610Cucumber (Chinese Long) v2cmacuB869
CmaCh07G006610Melon (DHL92) v3.5.1cmameB786
CmaCh07G006610Melon (DHL92) v3.5.1cmameB795
CmaCh07G006610Watermelon (Charleston Gray)cmawcgB776
CmaCh07G006610Watermelon (Charleston Gray)cmawcgB773
CmaCh07G006610Watermelon (97103) v1cmawmB816
CmaCh07G006610Watermelon (97103) v1cmawmB823
CmaCh07G006610Cucurbita pepo (Zucchini)cmacpeB866
CmaCh07G006610Cucurbita pepo (Zucchini)cmacpeB888
CmaCh07G006610Bottle gourd (USVL1VR-Ls)cmalsiB803
CmaCh07G006610Bottle gourd (USVL1VR-Ls)cmalsiB809
CmaCh07G006610Cucumber (Gy14) v2cgybcmaB263
CmaCh07G006610Cucumber (Gy14) v2cgybcmaB569
CmaCh07G006610Melon (DHL92) v3.6.1cmamedB888
CmaCh07G006610Melon (DHL92) v3.6.1cmamedB896