CmaCh07G006610 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCCTCCGTACACCGGCAAGGCGTGATTCCCTGTCTATTTTGAGGTGTGGGTGTGTGTTGGTACCACATAAATATATCATTACAACCAACGATCTGCTCCCGACCAATGGAGGGAGGGACCAGCACACAATCTCCGGATCCTCCTTCCTTAAATTTAAATTATATTCAATAATAAAATAAAAAACAATCAACATTAGTTTAGAAAATAGGCAATAACTTTAAAGAAGCTCCATCTAATTATTTTGTTTTGAACCATAAGATAGGAGTAAACTTAAAATGAAATCTTCATTAAATTATCTGACATTTATTTCCCACATATGTTACAATAATAAACCCATATAATACAAGATTCTAATACATACAATTTAGACCACTCTTTCCGTGACTTATAATTCTCTTTTGCATGTGATTCGTCTTTCTTTCTATAATTTTCGTAACTTTATAATTACGCCAATATTATTCATTTTAGATTTTTTTTTTTTTTTTTTTGGGTATGAATTTTAAAATTTGAGATTTAAATGGAAAAAAAAAAAAAAAAAGACAAATTTTATTTTAGTAAAAAGATGAAATATTCTTGGAGAAAAGTCCAACAAAGTCGTTATCAAAATTAGGCTTAAAAGTATGTGAAAACCTGAATAAAATATGGAGAAAGAAAAAAGGAAAGGGCTAAGGATGTGAATTATATATATATGAAAGTACTTGGAATCTCGTGCACTGCTGGTGTTGCCTATTTCTGAAGCATATCTTTCACGAAACTTGAAGGAGATTGGCTGGAATCTGACCCCAAACATCGCAGAACTTGGGGGACGTTTCTGTTTCTGTTCATGTTCATGTTCCTGTTCTTGTTCATCTTCCCTTCTTTTTCACTGGGTAAACGAGTGAGAATCTTTTTGTTTCAGCTCATATTATCTTCCTCTTTCCTTTATTTATTCACTATTGCTTTGAGCGGAATGGTGGAGTCCTCCATGTTCCATCGATTTCTGTGCAAACGGATTAGGATTATTGGAGGATATGAAGTTTCTTCTTCTTCTTCTTCTTCGTCATCCTCCATTTCTTCCCTCCTTTTCATCTTAGATTTTGACTTCTTTTGCAGTGTTCTGAAATATTGAAGTTCATGCCAAGCTGCAATTCCATCTGCTGATCGGTCGTTTCGATTACGAGTTATTGTTCAGGTAATTCTATAGGTTTTTTCGAGTTTGCTTTCGTTTTTTTTCTTTTTGTTAGTCTTTCGATTGATCTGAGTTGAATTCGAGGTTCGATCCAACTTCGACATTGTAATCTGTAATTAGTGGTGATCTTCGTTTGGTTTTAATGAATTACAGAGTTTCCATGGAAGCGAATTCTTACCGAGTATAATGATTTTTTTTTGTTTGTTTGTTTGTTTGTTTGGGAGGAGCGCATTAAATGTTCGACGTAATGACTGAATGAGATAGGGAGTATTTTGGATAGCGAACAAAAGACCAATGAAACGTTATCACAAACTTTTATTCATTCGTACTGTACTCCTCTGTCCTCATTATAGAATTGCTACCCAATACATAATTCGTAATGCCGTTGAACAGTGAAATAGCATATATTATATATTTATTTCTTTATCAAACTCGAGACCTTTGGATTAATGATTTTTCAGGCAAGAATTTATTCCAGTAGCAGATTCTGAATTTCTGAGCCGCTTCCTTTTTTATTGATAGTCTTCTTTCTGTTTTTTTTTTCTCTTTATTCCTCAGACTAGATTCAAGACTGCATCAGCTAAAATCCCAATGGAAAAGCTGCCTGAGGTATACGAAAAGGAGTTCATGAGGATGGCTATGTTAAAGCATGAAGAAACATTCAAACAACAGGTTTTTCCCCAATTTTGATCTTCAATTTGCCTTTTATTCTTTTGGTTTTGAGTTAAAAACAGCCATGCAATTATTGAACTGTTAAATGATGCATCTCTTCATTTTTACCACTGGGTTTTTTCAATCTGTCCATCTTAACAAGATCTGATTCAACGGGATCCATAATTTTGATAGTCTTTCCCTTTTTCTTTTAATGGGTGCTTTGAATTTTTTGTGCCATGGCAATGGATGGATTGGATTGATAGTCATTTTCCGTTTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGTATCCTCTCCTAATCTTTTATTCATGTTCTAAGCTTGGGAAGGCATATTGTAGGTACATGAACTTCATCGGCTTTATCGAACCCAAAAGACATTGATGAAAAACATGGAGAAAAGCAGGCAAAGTGGATGGAATCCAGAGAGTTGGGATAAAAGGAATGAGATATGTTTCCGACAAATTTATAAACAGGATGCAAAAACTTACTATAGATCATCAACAACTCATTCGGTCAAAATAGATTTGGAACAGCCTGCTGAAGATGATCAAACAGAATCCAGCAGTGGAGCTCTGCAGACCATAAACGAACCCGAACTGGAACTTACTTTAGGGCCTTCGAGTTACAATACTTCAGATTCAGGAGTAACCCACTCTTCTTCTTCAACAGGGTCCAGCCATGAGGGAAGACGTAGGGATTCAAAGCAAGTTAAGGGTCAGGAAATGGAGGTGTTGGGAGTGATTGAAAATTCTTCAGGCTACCAAAATGGAAGTCATAGGGGTGAGAAGAAGATGATGCTGGATTACCCTCCTTGGATTTTTCAAGTTGTGAGCCCTAACATGACTTAATTTTCAAGGGAAAAAAATATTATTTGAATGAAATTATATGAGAAGATCTTTGATTGCTTCTCATTGACTAATCAACAGTGGAAATTGACGTTTAGTTGTTTTCAAGTTTCTTCTTCATCTCTTGCTGTATATGGAGACGTTGATGTGTAAATACTTTTGTATTTCTAGCTATGATTAATGTGAATGGAGAAATTGAACCCCTAAATCAAATTAAATTGTTAGTCTAATATCCAACTTTGCTGTTGTTTTGAACTAAATTATAATAGAGACGGGTGGGTTATGAGTTCATCAGACTTTCGTTGCGCCACTCTGATTTCCAACAATCTAAGTTCACTATTAGAAGATATTATGTCCACTTTTGACCTGATACCTAACATCGTTAGTCCAATAATTTTAAAACACATCTCCTAAATAAATATTTTTATACTCCTACAATAAATATTTTATTCTCCTCTTAAAATAACGTGGGATTTCATGCTAAGTTAAAAAAGTTATCGAAATATAAAAAAAGTTGATAGAGATTGCGATTTTAATCGAATTCATCTGGGTGGAAGAATAGTAGGGTGGGCAGAAGCTTTCGAACATTTTAATGGTTCCCGATCTTAGCTACAATCAAACCCAACCATTGCTATAGGCGATTTTTTTTAAAAAACCATGTTACTCATATCTTATGGCTTCAACATTTTATTACACTATAGTATTTAACTGACTTCAACGAGAATGTTGTATTCAGAGTTCAATACTTATTTTTATGGCACGTAATTAGTAAAAAAATTCTTAAAAAGTATGGTATAGCTTAAAACTTGTATGCTTAATTTTAGAAATTTTATAAATGAGTAGTCAAAAGGAAACATTGTATTAATAATAACAGTTAATTATTCTAAACAATTTATTAATTATTTAGATCATTTTCATGGAGTAATTATTATTCACCATTTTTTTAATATTTTAATTAAACGATGAGTATACTATAATTTATTAGTTCTCTAAAATTGGACACGTCAACCCATTAAGAAATTAACCGTGAATTGAAGACCTATTTCATATATCTCGAACTTAGATTAATTTACAAAATGTTGAAGATTATTGAGAGCCAGTCCAATTTAATTTGTTAATTTAATGATTTAGGGAATGAACAAGTAAAGCCTCACAAAACTCTGCAATTGCCATTCAGCCCCGCACCCTATCCATTCCTCTTCTACCGCCAACCCATACCAAAGCTCTGCAACAAAGGGCAAAATATTATACTTCGGAGGGAGGATCTGCCCGACCTCACCCGGCAATGTCCACTTTCTTGTAGCCGAAGCTCTCAATGCTCGGCCCTCGACCGTCCGAGTAAACCCACTCAGCGTTATCTTCAGTATCCACCACCAATGGAGCTTTCTTCTTCATTTGTTAAATTCTCATCCTCTACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAACTTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAGATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCATAAAACTTGGACGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAAACGACAATCCTGCAAAACAATTTGACACTCTCTTATATTTGGCCTTCCAGCATCCCTCATGCGAAAGAACAAAGGCACGACACATAA ATGCTCCTCCGTACACCGGCAAGGCGTGATTCCCTGTCTATTTTGAGGTGTGGGTGTGTGTTGAACTTGGGGGACGTTTCTGTTTCTGTTCATGTTCATGTTCCTGTTCTTGTTCATCTTCCCTTCTTTTTCACTGGTTCATGCCAAGCTGCAATTCCATCTGCTGATCGGTCGTTTCGATTACGAGTTATTGTTCAGACTAGATTCAAGACTGCATCAGCTAAAATCCCAATGGAAAAGCTGCCTGAGGTATACGAAAAGGAGTTCATGAGGATGGCTATGTTAAAGCATGAAGAAACATTCAAACAACAGGTACATGAACTTCATCGGCTTTATCGAACCCAAAAGACATTGATGAAAAACATGGAGAAAAGCAGGCAAAGTGGATGGAATCCAGAGAGTTGGGATAAAAGGAATGAGATATGTTTCCGACAAATTTATAAACAGGATGCAAAAACTTACTATAGATCATCAACAACTCATTCGGTCAAAATAGATTTGGAACAGCCTGCTGAAGATGATCAAACAGAATCCAGCAGTGGAGCTCTGCAGACCATAAACGAACCCGAACTGGAACTTACTTTAGGGCCTTCGAGTTACAATACTTCAGATTCAGGAGTAACCCACTCTTCTTCTTCAACAGGGTCCAGCCATGAGGGAAGACGTAGGGATTCAAAGCAAGTTAAGGGTCAGGAAATGGAGGTGTTGGGAGTGATTGAAAATTCTTCAGGCTACCAAAATGGAAGTCATAGGGGTGAGAAGAAGATGATGCTGGATTACCCTCCTTGGATTTTTCAAGTTTGGAAATTGACGTTTAGTTGTTTTCAAGTTTCTTCTTCATCTCTTGCTGTATATGGAGACGTTGATGTCCCCGCACCCTATCCATTCCTCTTCTACCGCCAACCCATACCAAAGCTCTGCAACAAAGGGCAAAATATTATACTTCGGAGGGAGGATCTGCCCGACCTCACCCGGCAATGTCCACTTTCTTGTAGCCGAAGCTCTCAATGCTCGGCCCTCGACCGTCCGAGTAAACCCACTCAGCGTTATCTTCAGTATCCACCACCAATGGAGCTTTCTTCTTCATTTGTTAAATTCTCATCCTCTACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAACTTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAGATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCATAAAACTTGGACGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAAACGACAATCCTGCAAAACAATTTGACACTCTCTTATATTTGGCCTTCCAGCATCCCTCATGCGAAAGAACAAAGGCACGACACATAA ATGCTCCTCCGTACACCGGCAAGGCGTGATTCCCTGTCTATTTTGAGGTGTGGGTGTGTGTTGAACTTGGGGGACGTTTCTGTTTCTGTTCATGTTCATGTTCCTGTTCTTGTTCATCTTCCCTTCTTTTTCACTGGTTCATGCCAAGCTGCAATTCCATCTGCTGATCGGTCGTTTCGATTACGAGTTATTGTTCAGACTAGATTCAAGACTGCATCAGCTAAAATCCCAATGGAAAAGCTGCCTGAGGTATACGAAAAGGAGTTCATGAGGATGGCTATGTTAAAGCATGAAGAAACATTCAAACAACAGGTACATGAACTTCATCGGCTTTATCGAACCCAAAAGACATTGATGAAAAACATGGAGAAAAGCAGGCAAAGTGGATGGAATCCAGAGAGTTGGGATAAAAGGAATGAGATATGTTTCCGACAAATTTATAAACAGGATGCAAAAACTTACTATAGATCATCAACAACTCATTCGGTCAAAATAGATTTGGAACAGCCTGCTGAAGATGATCAAACAGAATCCAGCAGTGGAGCTCTGCAGACCATAAACGAACCCGAACTGGAACTTACTTTAGGGCCTTCGAGTTACAATACTTCAGATTCAGGAGTAACCCACTCTTCTTCTTCAACAGGGTCCAGCCATGAGGGAAGACGTAGGGATTCAAAGCAAGTTAAGGGTCAGGAAATGGAGGTGTTGGGAGTGATTGAAAATTCTTCAGGCTACCAAAATGGAAGTCATAGGGGTGAGAAGAAGATGATGCTGGATTACCCTCCTTGGATTTTTCAAGTTTGGAAATTGACGTTTAGTTGTTTTCAAGTTTCTTCTTCATCTCTTGCTGTATATGGAGACGTTGATGTCCCCGCACCCTATCCATTCCTCTTCTACCGCCAACCCATACCAAAGCTCTGCAACAAAGGGCAAAATATTATACTTCGGAGGGAGGATCTGCCCGACCTCACCCGGCAATGTCCACTTTCTTGTAGCCGAAGCTCTCAATGCTCGGCCCTCGACCGTCCGAGTAAACCCACTCAGCGTTATCTTCAGTATCCACCACCAATGGAGCTTTCTTCTTCATTTGTTAAATTCTCATCCTCTACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAACTTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAGATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCATAAAACTTGGACGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAAACGACAATCCTGCAAAACAATTTGACACTCTCTTATATTTGGCCTTCCAGCATCCCTCATGCGAAAGAACAAAGGCACGACACATAA MLLRTPARRDSLSILRCGCVLNLGDVSVSVHVHVPVLVHLPFFFTGSCQAAIPSADRSFRLRVIVQTRFKTASAKIPMEKLPEVYEKEFMRMAMLKHEETFKQQVHELHRLYRTQKTLMKNMEKSRQSGWNPESWDKRNEICFRQIYKQDAKTYYRSSTTHSVKIDLEQPAEDDQTESSSGALQTINEPELELTLGPSSYNTSDSGVTHSSSSTGSSHEGRRRDSKQVKGQEMEVLGVIENSSGYQNGSHRGEKKMMLDYPPWIFQVWKLTFSCFQVSSSSLAVYGDVDVPAPYPFLFYRQPIPKLCNKGQNIILRREDLPDLTRQCPLSCSRSSQCSALDRPSKPTQRYLQYPPPMELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNAIKLGRTSTCWKPNKPLDTPLSPPIVMETTILQNNLTLSYIWPSSIPHAKEQRHDT
BLAST of CmaCh07G006610 vs. Swiss-Prot
Match: RNC1_ARATH (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana GN=RNC1 PE=2 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 3.6e-30 Identity = 82/131 (62.60%), Postives = 94/131 (71.76%), Query Frame = 1
BLAST of CmaCh07G006610 vs. Swiss-Prot
Match: RNC1_MAIZE (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays GN=RNC1 PE=1 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.6e-22 Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = 1
BLAST of CmaCh07G006610 vs. Swiss-Prot
Match: RNC1_ORYSJ (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica GN=RNC1 PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 8.1e-22 Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 1
BLAST of CmaCh07G006610 vs. TrEMBL
Match: A0A0A0KIH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494990 PE=4 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 4.0e-68 Identity = 146/197 (74.11%), Postives = 166/197 (84.26%), Query Frame = 1
BLAST of CmaCh07G006610 vs. TrEMBL
Match: A0A0A0KGG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494980 PE=4 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 9.3e-57 Identity = 120/150 (80.00%), Postives = 129/150 (86.00%), Query Frame = 1
BLAST of CmaCh07G006610 vs. TrEMBL
Match: W9RN44_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023254 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 2.4e-44 Identity = 100/150 (66.67%), Postives = 120/150 (80.00%), Query Frame = 1
BLAST of CmaCh07G006610 vs. TrEMBL
Match: W9QX70_9ROSA (Ribonuclease 3 OS=Morus notabilis GN=L484_005920 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 2.4e-44 Identity = 100/150 (66.67%), Postives = 120/150 (80.00%), Query Frame = 1
BLAST of CmaCh07G006610 vs. TrEMBL
Match: M5W445_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004052mg PE=4 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 4.9e-42 Identity = 98/153 (64.05%), Postives = 118/153 (77.12%), Query Frame = 1
BLAST of CmaCh07G006610 vs. TAIR10
Match: AT4G37510.1 (AT4G37510.1 Ribonuclease III family protein) HSP 1 Score: 134.4 bits (337), Expect = 2.1e-31 Identity = 82/131 (62.60%), Postives = 94/131 (71.76%), Query Frame = 1
BLAST of CmaCh07G006610 vs. TAIR10
Match: AT5G67390.1 (AT5G67390.1 unknown protein) HSP 1 Score: 68.6 bits (166), Expect = 1.4e-11 Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 1
BLAST of CmaCh07G006610 vs. TAIR10
Match: AT1G26620.1 (AT1G26620.1 Plant protein of unknown function (DUF863)) HSP 1 Score: 52.0 bits (123), Expect = 1.3e-06 Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1
BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|659079633|ref|XP_008440360.1| (PREDICTED: uncharacterized protein LOC103484836 [Cucumis melo]) HSP 1 Score: 273.9 bits (699), Expect = 6.1e-70 Identity = 152/198 (76.77%), Postives = 171/198 (86.36%), Query Frame = 1
BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|778718594|ref|XP_004141880.2| (PREDICTED: uncharacterized protein LOC101207586 [Cucumis sativus]) HSP 1 Score: 267.3 bits (682), Expect = 5.8e-68 Identity = 146/197 (74.11%), Postives = 166/197 (84.26%), Query Frame = 1
BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|659079631|ref|XP_008440359.1| (PREDICTED: uncharacterized protein LOC103484834 [Cucumis melo]) HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56 Identity = 124/151 (82.12%), Postives = 130/151 (86.09%), Query Frame = 1
BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|449448248|ref|XP_004141878.1| (PREDICTED: uncharacterized protein LOC101207336 [Cucumis sativus]) HSP 1 Score: 229.6 bits (584), Expect = 1.3e-56 Identity = 120/150 (80.00%), Postives = 129/150 (86.00%), Query Frame = 1
BLAST of CmaCh07G006610 vs. NCBI nr
Match: gi|703129200|ref|XP_010104304.1| (hypothetical protein L484_023254 [Morus notabilis]) HSP 1 Score: 188.3 bits (477), Expect = 3.4e-44 Identity = 100/150 (66.67%), Postives = 120/150 (80.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |