CmaCh06G012380 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G012380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RPM1 interacting protein 4 transcript protein
Location	Cma_Chr06 : 8254705 .. 8257674 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCGATGGAAGGGTCACTGTCTGATGATTTGAATTCTCCGGTTGTGAAGTTCTTCGTCTTCAATCATTCGTCATCGCGCTGACCTCATCTTGTTCATTTCCATTTTTCGATACTCTCTCTCTCTTCTTTGTGTTCATTTCTCCAAAAGATTTAGTTAAAAAGTGAAAAATGATGCAAAACTTTTGCTCCAGAAAGTGGAGTGAAAAATGTTGCTGTCAAATCGTTTTCTTCTCCCCAATTTTTTTCATTTTAGTTCACCAAAAGCTTCCGTTAAAAAAGGTCATGAAATTCTACAGATCCGTCTTCCAATTGCAATATTATTCGATTTCCAGAGGGTTTTCACATTAATTTTGGATCATGTTTCGGGTCCTACTTCGAGAATCTAGACTTTCGAGTCAATAATGTCGCTGAGTAAGCCATTAATTTCATGGAAGCTTGCTTTTCTTTAGCTAATTGGTTGATCGTTTTCATGCCAGTGCTCTGTATCTGCTTCTATTATGGCCGTCGCTTTCGCCTAGTGTGGCCAATTTTTGTTTGTTTTAACTTCTGCTGTGCAGGTTGAACTTGGAAGAAGTTAAAATAGGTTGCTCGGTTTGATTTGGGAGTACAGTTTTGAGATTTCTAGCCTCGTCCTTAGGCTAATGGCTGTGAGTTTTCGAAAGTTCTCTACATTCTCTTCGTTTGTTATTTTGTGATTGCCATGTTCTTGACTGGTTCTGAAGCGATGGAGCTTACTGAATTTCTTTCGTCATCTTATTTATAAGTTGCGAACTATTGATATCTATGCTTTGGCCTCATTTTTTGAACTTTATATGCATATTTTTATGAGATCTTTCTTTTTTCGCTTTTCTTGTGTTCTGGCTGTTTATGGATGTATACAATGTAGAATCATATTCAATTGGTGTCGAGTTCAGAGATGAACAAGCTCGTTATTTCGTCGTTGATCTGACTATCTTGGAGTCTAGAACTGATTTGACCTTCTCTTCTCTAGCTTACCTTAATTAATGGGTTCAACCTGTAGGCTACTTTTAATTCTCTTTCCATGACTGAGTCTTTTGAACACATTATGTATCTTACTGAACTTTTTAAAGAAAAAGTAATTAGTTCTGTCTTTCTAAGACTGTGTCAAAGATTCAGTCAAGCCCGTTTCTCCTGTCATAAAGAAGAGACCATTTCCACTCCAAGAATTCCTTTAAGATGTTCAATGCCCATGTTTATTGTTCTGATTCATGTGGGAAATCTTATTGATACACAATTCGTAGGCGGTACCGCCATGGTAATAACACGAATTTGATACTATACTATTTAGAAACTATGGTAAGTAATTGGTATTGCTTTTAATGTCATGGCTGACAGCCTGAAAGAAGATGGTTATCCTTATTTTCCACCATGAGCAAGCTCATCTTTCATGAGTTTTGAATTTGGTTTATATATATAAATTTGTATGCTTCAAAGGTAAAACAATGCGTGCTGATTGCATATCGTCATTTTCTTTCACATGGATGGTTTTGTAACCTTTTCATAGATTTGTTACCATCTAGCTTTTAGGGACTATAAGGAAATTCCCTACCGGAAGTTTTGAGAAGTTGCAGGAATCTGCTTGAATTGGGTGAATTGCATGTAATTTTTAGAATATGCATGAATTCAATCCAGTTTAGAACCATAAATCTAGTTTCTTTGCTTATGGTTGGTCCACTGTAAATGATTTAGTAAGAATGAAAGACATTTTCATCTTCCCCTGCAGCAGAGTTTGCAAGTACCAAAATTTGGGAAGTGGGATGATGGGGAGGATGTCCCGTATACGACCTATTTTGACAATGCAACAAAGGCTATTTCCGAGAGGTTGAATTTAAATGATCCTCTTCAACAAGAGGAGATTTCGAAGCAACACGAAACTAGAGAAGGTGTTGTGAGGAGGCAAGCCGAGTCTCCATTGCACCGGGATGGTTCAGAACTGCCTGGTCAAGATTATGACAGTTTAAAATCAACCACGAGTCGGGGTCAACAAGCATTAAGGCAAAAGTACACTCAAGAACATTCGAGCTTGGAAGATGGTAATGCAAAAAAACACCTTGAATCTCCTTTGGACCATCAAACAAGGAGTTGGGTTAGCTTTAATTCCCCTCTTCATCAACGCCAGGGAAACAACATGGCCACTTTGAGAAATGGCGCAGCTTCTGACAGCAACATAGAAAATCCATCTCTCCATACACGACAGCATCCAAGGACGAAATGGCGCAGCTTCTGACAGCAACATAGAAAATCCATCTCTCCATACACGACAGCATCCAAGGACCGAAGCAAAAAGCGTTGTACCATCTTCGCCGTTACGGGACCGTAGGGGTTTGAGTTCACATAAAGGAGGTTGTCATGATGGTATAACTCCCTTGACTCCTGGAAGATCACGTCAACAATCCGCTCCTCGGGGCAATGAAACTGTAGTTTCTTCTTCTCATTTCCTTTTCTTTGTGTTTAATTGCACAAGTAGAGAGTCATCAAAAGATTTTGGAGATAGTAACAATCAACCAGGGTAAAGGTTGATAAAGAAAATGGTGTTTTGAGTGTCTGAATTTCCAGATTTGTTCTTTAGGTATTATCAGGTCTTTTAAACAAAAGCTGCCTAGAATTTGCTGAAATCAAATGGTTCATGACTTTGAATGACATGATCTCTTATGTTTGAGCTTGCAGCCTGATCGTAGCCCCACAGTTCCAAGATTTGGTGACTGGGATGAGAGCGATCCAACATCATCTGCAGCCTGATCGTAGCCCCACAGTTCCAAGATTTGGTGACTGGGATGAGAGCGATCCAACATCATCTGAGAACTACACAAGTATTTTCACCAGAGTACGTGAGGAGAGACAAACTGAGGAAGAAGGGGGTTTTCCGGTGGGGACTAACATTTCTCATGCTGACCGTCGTAATCGATCCGATGCCGAAAATTCTAGGTTTTCCGGTGGGGACTAA

mRNA sequence

ATGGGGGCGATGGAAGGGTCACTGTCTGATGATTTGAATTCTCCGGTTGTGAAGCGGTACCGCCATGGTAATAACACGAATTTGATACTATACTATTTAGAAACTATGCAGAGTTTGCAAGTACCAAAATTTGGGAAGTGGGATGATGGGGAGGATGTCCCGTATACGACCTATTTTGACAATGCAACAAAGGCTATTTCCGAGAGGTTGAATTTAAATGATCCTCTTCAACAAGAGGAGATTTCGAAGCAACACGAAACTAGAGAAGGTGTTGTGAGGAGGCAAGCCGAGTCTCCATTGCACCGGGATGGTTCAGAACTGCCTGGTCAAGATTATGACAGTTTAAAATCAACCACGAGTCGGGGTCAACAAGCATTAAGGCAAAAGTACACTCAAGAACATTCGAGCTTGGAAGATGGTAATGCAAAAAAACACCTTGAATCTCCTTTGGACCATCAAACAAGGAGTTGGAAAATCCATCTCTCCATACACGACAGCATCCAAGGACGAAATGGCGCAGCTTCTGACAGCAACATAGAAAATCCATCTCTCCATACACGACAGCATCCAAGGACCGAAGCAAAAAGCGTTGTACCATCTTCGCCGTTACGGGACCGTAGGGGTTTGAGTTCACATAAAGGAGGTTGTCATGATGGTATAACTCCCTTGACTCCTGGAAGATCACGTCAACAATCCGCTCCTCGGGGCAATGAAACTCCTGATCGTAGCCCCACAGTTCCAAGATTTGGTGACTGGGATGAGAGCGATCCAACATCATCTGAGAACTACACAAGTATTTTCACCAGAGTACGTGAGGAGAGACAAACTGAGGAAGAAGGGGGTTTTCCGGTGGGGACTAACATTTCTCATGCTGACCGTCGTAATCGATCCGATGCCGAAAATTCTAGGTTTTCCGGTGGGGACTAA

Coding sequence (CDS)

ATGGGGGCGATGGAAGGGTCACTGTCTGATGATTTGAATTCTCCGGTTGTGAAGCGGTACCGCCATGGTAATAACACGAATTTGATACTATACTATTTAGAAACTATGCAGAGTTTGCAAGTACCAAAATTTGGGAAGTGGGATGATGGGGAGGATGTCCCGTATACGACCTATTTTGACAATGCAACAAAGGCTATTTCCGAGAGGTTGAATTTAAATGATCCTCTTCAACAAGAGGAGATTTCGAAGCAACACGAAACTAGAGAAGGTGTTGTGAGGAGGCAAGCCGAGTCTCCATTGCACCGGGATGGTTCAGAACTGCCTGGTCAAGATTATGACAGTTTAAAATCAACCACGAGTCGGGGTCAACAAGCATTAAGGCAAAAGTACACTCAAGAACATTCGAGCTTGGAAGATGGTAATGCAAAAAAACACCTTGAATCTCCTTTGGACCATCAAACAAGGAGTTGGAAAATCCATCTCTCCATACACGACAGCATCCAAGGACGAAATGGCGCAGCTTCTGACAGCAACATAGAAAATCCATCTCTCCATACACGACAGCATCCAAGGACCGAAGCAAAAAGCGTTGTACCATCTTCGCCGTTACGGGACCGTAGGGGTTTGAGTTCACATAAAGGAGGTTGTCATGATGGTATAACTCCCTTGACTCCTGGAAGATCACGTCAACAATCCGCTCCTCGGGGCAATGAAACTCCTGATCGTAGCCCCACAGTTCCAAGATTTGGTGACTGGGATGAGAGCGATCCAACATCATCTGAGAACTACACAAGTATTTTCACCAGAGTACGTGAGGAGAGACAAACTGAGGAAGAAGGGGGTTTTCCGGTGGGGACTAACATTTCTCATGCTGACCGTCGTAATCGATCCGATGCCGAAAATTCTAGGTTTTCCGGTGGGGACTAA

Protein sequence

MGAMEGSLSDDLNSPVVKRYRHGNNTNLILYYLETMQSLQVPKFGKWDDGEDVPYTTYFDNATKAISERLNLNDPLQQEEISKQHETREGVVRRQAESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEHSSLEDGNAKKHLESPLDHQTRSWKIHLSIHDSIQGRNGAASDSNIENPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNETPDRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNRSDAENSRFSGGD

Homology

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BLAST of CmaCh06G012380 vs. TrEMBL
Match: A0A0A0L7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130280 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.0e-85
Identity = 180/289 (62.28%), Postives = 211/289 (73.01%), Query Frame = 1


Query: 37  QSLQVPKFGKWDDGEDVPYTTYFDNATKAISERLNLNDPL-QQEEIS-------KQHETR 96
           +S QVPKFGKWDDG+DVPYTTYFDNATKA  ER+N ND L  +EEIS       +QH+ +
Sbjct: 3   RSSQVPKFGKWDDGDDVPYTTYFDNATKAKFERMNPNDSLPHREEISNTVRSNYEQHKIK 62

Query: 97  EG-VVRRQAESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEHSSLEDGNAKKHLE 156
           EG VVRRQ ESPLH D  EL G+DY+ +KS  SRGQQ  R K+TQE   LED N KK L+
Sbjct: 63  EGGVVRRQPESPLHHDAPELSGRDYNGIKSAKSRGQQVSRPKHTQEDLGLEDSNMKKQLD 122

Query: 157 SPLDHQTRSWKI-----------HLSIHDSIQG--RNGAASDSNIENPSLHTRQHPRTEA 216
           SPLDH++                H S  +S +G  RNG  S+ +IEN  LH+RQHPRTEA
Sbjct: 123 SPLDHRSMGQVSLNSPLHQRQGNHSSTSNSSKGTMRNGTVSECSIENSPLHSRQHPRTEA 182

Query: 217 KSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNETPDRSPTVPRFGDWDE 276
           K+VVPSSPLR+RRG SS +G  H+G+ PLTPGRSRQQS PRGNETPDR  TVP+FGDWDE
Sbjct: 183 KTVVPSSPLRERRGSSSPRGSSHEGLAPLTPGRSRQQSVPRGNETPDRGATVPKFGDWDE 242

Query: 277 SDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNRSDAENSR 304
           SDP+SSENYT+IFTRVR ERQT E+G  P GTN+S    R+RS AENS+
Sbjct: 243 SDPSSSENYTNIFTRVRVERQT-EDGSLPAGTNVSSI--RSRSSAENSK 288

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BLAST of CmaCh06G012380 vs. TrEMBL
Match: M0ZZV4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004571 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.7e-32
Identity = 108/296 (36.49%), Postives = 153/296 (51.69%), Query Frame = 1


Query: 40  QVPKFGKWDDGEDVPYTTYFDNATKAIS-ERLNLNDPLQQEEISKQHETREGV------- 99
           QVPKFG+W+  EDV YTTYF+NA K     ++N NDP   E   K     + V       
Sbjct: 6   QVPKFGEWERDEDVQYTTYFENAAKGKKGSKMNPNDPQYLEAKVKGENGTDSVRQKPERI 65

Query: 100 -------VRRQAESPLHRD--GSELP--------GQDYDSLKST--TSRGQQALRQKYTQ 159
                  +R+   SP+H D  G ++P        G+ Y   KS   T +G + L  ++ +
Sbjct: 66  ASRDDVELRKSTGSPMHPDTMGHKVPTYPSPQRHGEKYGGNKSESETIKGPEILTPRH-E 125

Query: 160 EHSSLEDGNAKKHLESPLDHQTRSWKIHL-SIHDSIQGRNGAAS-----------DSNIE 219
              S E+G  +K  +SPL ++    +  + S H    G +G A+           D +IE
Sbjct: 126 RRPSREEGYLRKPTDSPLRNENMGRRTPMESPHHRYGGLSGGATPKRASQQSVGPDRSIE 185

Query: 220 NPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNETP 279
           +  LH   H R   K  V SSP  +R+  S    G H G+ P TPGRSR +SA +G++TP
Sbjct: 186 HSPLHPHSHGRPGGKGGVVSSPSWERKASSE---GTH-GLAPSTPGRSRLRSAAKGDDTP 245

Query: 280 DRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNR 297
           D SP VP+FGDWDE+DP S+E YT IF +VREE+QT         T+ S+++ + R
Sbjct: 246 DDSPAVPKFGDWDENDPASAEGYTQIFNKVREEKQTGSAKVPSTSTDTSYSNSQKR 296

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BLAST of CmaCh06G012380 vs. TrEMBL
Match: A0A0V0I1U9_SOLCH (Putative RPM1-interacting protein 4-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 108/303 (35.64%), Postives = 155/303 (51.16%), Query Frame = 1


Query: 40  QVPKFGKWDDGEDVPYTTYFDNATKAIS-ERLNLNDPLQQEEISKQHETREGV------- 99
           QVPKFG+W+  EDV YT+YF+NA K     ++N NDP   E   K     +GV       
Sbjct: 6   QVPKFGEWERDEDVQYTSYFENAAKGKKGSKMNPNDPQYLEAKVKGENGTDGVRQKPEPI 65

Query: 100 -------VRRQAESPLHRD--GSELP--------GQDYDSLKST--TSRGQQALRQKYTQ 159
                  +R+    P+H D  G ++P        G+ Y   KS   T +G   L  ++ +
Sbjct: 66  ASRDDVELRKSTGYPMHPDTMGHKVPTYPSPQRHGEKYGGNKSESETMKGPDILTPRH-E 125

Query: 160 EHSSLEDGNAKKHLESPLDHQTRSWKIHL-SIHDSIQGRNGAAS-----------DSNIE 219
              S E+G  +K  +SPL ++    +  + S H    G +G A+           D +IE
Sbjct: 126 RRPSREEGYLRKPTDSPLRNENMGRRTPMESPHHRYGGLSGGATPKRASQQSVGPDRSIE 185

Query: 220 NPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNETP 279
           +  LH   H R   K  V SSP  +R+  S    G H G+ PLTPGRSR +S  +G++TP
Sbjct: 186 HSPLHPHSHGRPGGKGGVVSSPSWERKASSE---GTH-GLAPLTPGRSRLRSIAKGDDTP 245

Query: 280 DRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNRSDAE 304
           D SP VP+FGDWDE+DP S+E YT IF +VREE+QT         T+ S+++ + R   +
Sbjct: 246 DDSPAVPKFGDWDENDPASAEGYTQIFNKVREEKQTGSAKVPSSSTDTSYSNSQKRYGND 303

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BLAST of CmaCh06G012380 vs. TrEMBL
Match: A0A068URU8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033204001 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 111/302 (36.75%), Postives = 154/302 (50.99%), Query Frame = 1


Query: 37  QSLQVPKFGKWDDGEDVPYTTYFDNATKAIS-ERLNLNDPLQQEEISKQ----------- 96
           Q  QVPKFG W+  EDVPYT YFDNA K     ++N NDP  QE++  +           
Sbjct: 3   QRSQVPKFGNWESEEDVPYTVYFDNARKGKKGSKMNTNDP--QEDLDAETKGQKRPEATR 62

Query: 97  -----HETRE-GVVRRQAESPLHRDG------SELPGQDYDSLK-------STTSRGQQA 156
                H +RE G +R+  +SPLH D       +E P      LK       S  S+G   
Sbjct: 63  AKHVRHTSREDGDLRKSIDSPLHSDAMSQKSANESPHHKQGGLKHGSRKPESEGSKGTDT 122

Query: 157 LRQKYTQEHSSLEDGNAKKHLESPL-----DHQTRSWKIH-----LSIHDSIQ--GRNGA 216
           +R +    H S E+G+ ++  +SPL     + +T     H     LS  ++ +   R   
Sbjct: 123 VRPR----HESREEGDLRRPTDSPLRNETGNRRTSHDSPHHRHGGLSAGETPKRVARQSV 182

Query: 217 ASDSNIENPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSA 276
            SD +I+   LH     RT  +    SSP  +R+G  S +GG   G+ P TPG SR +S 
Sbjct: 183 GSDRSIDQSPLHPHSQVRTGGRGSGVSSPSWERKG--SSEGGL--GLAPSTPGGSRLKSV 242

Query: 277 PRGNETPDRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQT--EEEGGFPVGTNISHA 294
            RG+ETPD SP VP+FGDWDE+DP S+E YT IF +VREER +   +  G P  ++ S+ 
Sbjct: 243 TRGDETPDHSPAVPKFGDWDETDPASAEGYTHIFNKVREERHSGAGKVPGMPTESSYSNG 294

[Close]

BLAST of CmaCh06G012380 vs. TrEMBL
Match: K4DHL7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.4e-30
Identity = 107/297 (36.03%), Postives = 151/297 (50.84%), Query Frame = 1


Query: 40  QVPKFGKWDDGEDVPYTTYFDNATKAIS-ERLNLNDPLQQEEISKQHETREGVVRRQAE- 99
           QVPKFG+W+  EDV YTTYF+NA K     ++N NDP Q  E   + E     VR++ E 
Sbjct: 6   QVPKFGEWESDEDVQYTTYFENAAKGKKGSKMNPNDP-QYLEAKVKGENGTDTVRQKPER 65

Query: 100 --------------SPLHRD--GSELP--------GQDYDSLKST--TSRGQQALRQKYT 159
                         SP+H D  G ++P        G  Y   KS   T +  + L  ++ 
Sbjct: 66  IASRDDVELRKSTGSPMHPDTMGHKVPTYPSPQRHGAKYGGNKSESETMKSTEILTPRH- 125

Query: 160 QEHSSLEDGNAKKHLESPLDHQTRSWKIHL-SIHDSIQGRNGAAS-----------DSNI 219
           +   S E+G  +K  +SPL ++    +  + S H    G +G A+           D +I
Sbjct: 126 ERRPSREEGYLRKPTDSPLRNENMGRRTPMESPHHRYGGLSGGATPKRASQQSVGPDRSI 185

Query: 220 ENPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNET 279
           E+  LH   H R   K  V SSP  +R+  S    G H G+ P TPGRSR +   +G++T
Sbjct: 186 EHSPLHPHSHGRPGGKGGVVSSPSWERKASSE---GSH-GLAPSTPGRSRLRPVAKGDDT 245

Query: 280 PDRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNR 297
           PD SP VP+FGDWDE+DP S+E YT IF +VREE+QT         T+ S+++ + R
Sbjct: 246 PDDSPAVPKFGDWDENDPASAEGYTQIFNKVREEKQTGSAKVPSSSTDTSYSNSQKR 296

[Close]

BLAST of CmaCh06G012380 vs. TAIR10
Match: AT3G25070.1 (AT3G25070.1 RPM1 interacting protein 4)

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-07
Identity = 56/189 (29.63%), Postives = 89/189 (47.09%), Query Frame = 1


Query: 112 YDSLKSTTSRGQQALRQKYTQEHSSLEDGNAKKHLESP------LDHQTRSWKIHLSIHD 171
           +D  + T + G + +      E++S     A  H  S       +D   RS +   S  +
Sbjct: 24  FDKARKTRAPGSKIMNPN-DPEYNSDSQSQAPPHPPSSRTKPEQVDTVRRSREHMRSREE 83

Query: 172 SIQGRNGAASDSNIENPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTP 231
           S   + G A  S+  N + + RQ   ++  S    SPL        HK   +DG      
Sbjct: 84  SELKQFGDAGGSS--NEAANKRQGRASQNNSYDNKSPL--------HKNS-YDGT----- 143

Query: 232 GRSRQQSAP-RGNETPDRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQTEEEGGFPV 291
           G+SR +    R +E+P++   VP+FGDWDE++P+S++ YT IF +VREER +        
Sbjct: 144 GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSS-------- 187

Query: 292 GTNISHADR 294
           G N+S + R
Sbjct: 204 GANVSGSSR 187

[Close]

BLAST of CmaCh06G012380 vs. NCBI nr
Match: gi|449432400|ref|XP_004133987.1| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 8.6e-85
Identity = 180/289 (62.28%), Postives = 211/289 (73.01%), Query Frame = 1


Query: 37  QSLQVPKFGKWDDGEDVPYTTYFDNATKAISERLNLNDPL-QQEEIS-------KQHETR 96
           +S QVPKFGKWDDG+DVPYTTYFDNATKA  ER+N ND L  +EEIS       +QH+ +
Sbjct: 3   RSSQVPKFGKWDDGDDVPYTTYFDNATKAKFERMNPNDSLPHREEISNTVRSNYEQHKIK 62

Query: 97  EG-VVRRQAESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEHSSLEDGNAKKHLE 156
           EG VVRRQ ESPLH D  EL G+DY+ +KS  SRGQQ  R K+TQE   LED N KK L+
Sbjct: 63  EGGVVRRQPESPLHHDAPELSGRDYNGIKSAKSRGQQVSRPKHTQEDLGLEDSNMKKQLD 122

Query: 157 SPLDHQTRSWKI-----------HLSIHDSIQG--RNGAASDSNIENPSLHTRQHPRTEA 216
           SPLDH++                H S  +S +G  RNG  S+ +IEN  LH+RQHPRTEA
Sbjct: 123 SPLDHRSMGQVSLNSPLHQRQGNHSSTSNSSKGTMRNGTVSECSIENSPLHSRQHPRTEA 182

Query: 217 KSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNETPDRSPTVPRFGDWDE 276
           K+VVPSSPLR+RRG SS +G  H+G+ PLTPGRSRQQS PRGNETPDR  TVP+FGDWDE
Sbjct: 183 KTVVPSSPLRERRGSSSPRGSSHEGLAPLTPGRSRQQSVPRGNETPDRGATVPKFGDWDE 242

Query: 277 SDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNRSDAENSR 304
           SDP+SSENYT+IFTRVR ERQT E+G  P GTN+S    R+RS AENS+
Sbjct: 243 SDPSSSENYTNIFTRVRVERQT-EDGSLPAGTNVSSI--RSRSSAENSK 288

[Close]

BLAST of CmaCh06G012380 vs. NCBI nr
Match: gi|659075812|ref|XP_008438343.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 1.9e-79
Identity = 173/289 (59.86%), Postives = 207/289 (71.63%), Query Frame = 1


Query: 37  QSLQVPKFGKWDDGEDVPYTTYFDNATKAISERLNLNDPL-QQEEISK----QHETRE-- 96
           +S QVPKFGKWDDG+DVPYTTYFDNATKA  ER+N NDPL  +EEIS+     +E ++  
Sbjct: 3   RSSQVPKFGKWDDGDDVPYTTYFDNATKAKFERMNPNDPLPHREEISETVRSNYENQKIK 62

Query: 97  --GVVRRQAESPLHRDGSELPGQDYDSLKSTTSRGQQALRQKYTQEHSSLEDGNAKKHLE 156
             GVVRRQ ESPLH D  E+ G+DY+ +KS   RGQQ    K+TQE  S+EDGN KK L 
Sbjct: 63  EGGVVRRQPESPLHHDAPEMSGRDYNGIKSAKRRGQQLSGPKHTQEDLSMEDGNMKKQLG 122

Query: 157 SPLDHQT-----------RSWKIHLSIHDSIQG--RNGAASDSNIENPSLHTRQHPRTEA 216
           SPLDH++           +    + S  +S +G  RNG  S+ +IEN  LH+RQHPRTE 
Sbjct: 123 SPLDHRSIGQVSFNSPLHQRQGNNSSTSNSSKGTMRNGTVSECSIENSPLHSRQHPRTEP 182

Query: 217 KSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNETPDRSPTVPRFGDWDE 276
           K+ VPSSPLRDRRG SS +   H+G+ PLT GRSR +S PRGNETPDR  TVPRFGDWDE
Sbjct: 183 KTAVPSSPLRDRRGSSSPRESSHEGLAPLTLGRSRLRSVPRGNETPDRGATVPRFGDWDE 242

Query: 277 SDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNRSDAENSR 304
           SDP+SSENYT+IFTRVREERQT E+G  P GTN+S    R+RS AENS+
Sbjct: 243 SDPSSSENYTNIFTRVREERQT-EDGSLPAGTNVSSI--RSRSGAENSK 288

[Close]

BLAST of CmaCh06G012380 vs. NCBI nr
Match: gi|565366485|ref|XP_006349918.1| (PREDICTED: RPM1-interacting protein 4-like [Solanum tuberosum])

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 108/296 (36.49%), Postives = 153/296 (51.69%), Query Frame = 1


Query: 40  QVPKFGKWDDGEDVPYTTYFDNATKAIS-ERLNLNDPLQQEEISKQHETREGV------- 99
           QVPKFG+W+  EDV YTTYF+NA K     ++N NDP   E   K     + V       
Sbjct: 6   QVPKFGEWERDEDVQYTTYFENAAKGKKGSKMNPNDPQYLEAKVKGENGTDSVRQKPERI 65

Query: 100 -------VRRQAESPLHRD--GSELP--------GQDYDSLKST--TSRGQQALRQKYTQ 159
                  +R+   SP+H D  G ++P        G+ Y   KS   T +G + L  ++ +
Sbjct: 66  ASRDDVELRKSTGSPMHPDTMGHKVPTYPSPQRHGEKYGGNKSESETIKGPEILTPRH-E 125

Query: 160 EHSSLEDGNAKKHLESPLDHQTRSWKIHL-SIHDSIQGRNGAAS-----------DSNIE 219
              S E+G  +K  +SPL ++    +  + S H    G +G A+           D +IE
Sbjct: 126 RRPSREEGYLRKPTDSPLRNENMGRRTPMESPHHRYGGLSGGATPKRASQQSVGPDRSIE 185

Query: 220 NPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNETP 279
           +  LH   H R   K  V SSP  +R+  S    G H G+ P TPGRSR +SA +G++TP
Sbjct: 186 HSPLHPHSHGRPGGKGGVVSSPSWERKASSE---GTH-GLAPSTPGRSRLRSAAKGDDTP 245

Query: 280 DRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNR 297
           D SP VP+FGDWDE+DP S+E YT IF +VREE+QT         T+ S+++ + R
Sbjct: 246 DDSPAVPKFGDWDENDPASAEGYTQIFNKVREEKQTGSAKVPSTSTDTSYSNSQKR 296

[Close]

BLAST of CmaCh06G012380 vs. NCBI nr
Match: gi|661885190|emb|CDP11146.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 144.4 bits (363), Expect = 3.2e-31
Identity = 111/302 (36.75%), Postives = 154/302 (50.99%), Query Frame = 1


Query: 37  QSLQVPKFGKWDDGEDVPYTTYFDNATKAIS-ERLNLNDPLQQEEISKQ----------- 96
           Q  QVPKFG W+  EDVPYT YFDNA K     ++N NDP  QE++  +           
Sbjct: 3   QRSQVPKFGNWESEEDVPYTVYFDNARKGKKGSKMNTNDP--QEDLDAETKGQKRPEATR 62

Query: 97  -----HETRE-GVVRRQAESPLHRDG------SELPGQDYDSLK-------STTSRGQQA 156
                H +RE G +R+  +SPLH D       +E P      LK       S  S+G   
Sbjct: 63  AKHVRHTSREDGDLRKSIDSPLHSDAMSQKSANESPHHKQGGLKHGSRKPESEGSKGTDT 122

Query: 157 LRQKYTQEHSSLEDGNAKKHLESPL-----DHQTRSWKIH-----LSIHDSIQ--GRNGA 216
           +R +    H S E+G+ ++  +SPL     + +T     H     LS  ++ +   R   
Sbjct: 123 VRPR----HESREEGDLRRPTDSPLRNETGNRRTSHDSPHHRHGGLSAGETPKRVARQSV 182

Query: 217 ASDSNIENPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSA 276
            SD +I+   LH     RT  +    SSP  +R+G  S +GG   G+ P TPG SR +S 
Sbjct: 183 GSDRSIDQSPLHPHSQVRTGGRGSGVSSPSWERKG--SSEGGL--GLAPSTPGGSRLKSV 242

Query: 277 PRGNETPDRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQT--EEEGGFPVGTNISHA 294
            RG+ETPD SP VP+FGDWDE+DP S+E YT IF +VREER +   +  G P  ++ S+ 
Sbjct: 243 TRGDETPDHSPAVPKFGDWDETDPASAEGYTHIFNKVREERHSGAGKVPGMPTESSYSNG 294

[Close]

BLAST of CmaCh06G012380 vs. NCBI nr
Match: gi|460415284|ref|XP_004252989.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum lycopersicum])

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 107/297 (36.03%), Postives = 151/297 (50.84%), Query Frame = 1


Query: 40  QVPKFGKWDDGEDVPYTTYFDNATKAIS-ERLNLNDPLQQEEISKQHETREGVVRRQAE- 99
           QVPKFG+W+  EDV YTTYF+NA K     ++N NDP Q  E   + E     VR++ E 
Sbjct: 6   QVPKFGEWESDEDVQYTTYFENAAKGKKGSKMNPNDP-QYLEAKVKGENGTDTVRQKPER 65

Query: 100 --------------SPLHRD--GSELP--------GQDYDSLKST--TSRGQQALRQKYT 159
                         SP+H D  G ++P        G  Y   KS   T +  + L  ++ 
Sbjct: 66  IASRDDVELRKSTGSPMHPDTMGHKVPTYPSPQRHGAKYGGNKSESETMKSTEILTPRH- 125

Query: 160 QEHSSLEDGNAKKHLESPLDHQTRSWKIHL-SIHDSIQGRNGAAS-----------DSNI 219
           +   S E+G  +K  +SPL ++    +  + S H    G +G A+           D +I
Sbjct: 126 ERRPSREEGYLRKPTDSPLRNENMGRRTPMESPHHRYGGLSGGATPKRASQQSVGPDRSI 185

Query: 220 ENPSLHTRQHPRTEAKSVVPSSPLRDRRGLSSHKGGCHDGITPLTPGRSRQQSAPRGNET 279
           E+  LH   H R   K  V SSP  +R+  S    G H G+ P TPGRSR +   +G++T
Sbjct: 186 EHSPLHPHSHGRPGGKGGVVSSPSWERKASSE---GSH-GLAPSTPGRSRLRPVAKGDDT 245

Query: 280 PDRSPTVPRFGDWDESDPTSSENYTSIFTRVREERQTEEEGGFPVGTNISHADRRNR 297
           PD SP VP+FGDWDE+DP S+E YT IF +VREE+QT         T+ S+++ + R
Sbjct: 246 PDDSPAVPKFGDWDENDPASAEGYTQIFNKVREEKQTGSAKVPSSSTDTSYSNSQKR 296

The following BLAST results are available for this feature:

BLAST of CmaCh06G012380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G012380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7W9_CUCSA	6.0e-85	62.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G130280 PE=4 SV=1	[more]
M0ZZV4_SOLTU	7.7e-32	36.49	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004571 PE=4 SV=1	[more]
A0A0V0I1U9_SOLCH	2.2e-31	35.64	Putative RPM1-interacting protein 4-like OS=Solanum chacoense PE=4 SV=1	[more]
A0A068URU8_COFCA	2.2e-31	36.75	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033204001 PE=4 SV=1	[more]
K4DHL7_SOLLC	9.4e-30	36.03	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmaCh06G012380 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25070.1	5.9e-07	29.63	RPM1 interacting protein 4	[more]

BLAST of CmaCh06G012380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432400\|ref\|XP_004133987.1\|	8.6e-85	62.28	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]	[more]
gi\|659075812\|ref\|XP_008438343.1\|	1.9e-79	59.86	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
gi\|565366485\|ref\|XP_006349918.1\|	1.1e-31	36.49	PREDICTED: RPM1-interacting protein 4-like [Solanum tuberosum]	[more]
gi\|661885190\|emb\|CDP11146.1\|	3.2e-31	36.75	unnamed protein product [Coffea canephora]	[more]
gi\|460415284\|ref\|XP_004252989.1\|	1.4e-29	36.03	PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G012380.1	CmaCh06G012380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 240..276 score: 5.2
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 32..296 score: 4.1
None	No IPR available	PANTHER	PTHR33159:SF6	RPM1-INTERACTING PROTEIN 4	coord: 32..296 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G012380	Cucsa.256560	Cucumber (Gy14) v1	cgycmaB0726
CmaCh06G012380	Cla021409	Watermelon (97103) v1	cmawmB804
CmaCh06G012380	Csa3G130280	Cucumber (Chinese Long) v2	cmacuB832
CmaCh06G012380	MELO3C006302	Melon (DHL92) v3.5.1	cmameB773
CmaCh06G012380	ClCG05G003210	Watermelon (Charleston Gray)	cmawcgB743
CmaCh06G012380	CSPI03G10730	Wild cucumber (PI 183967)	cmacpiB845
CmaCh06G012380	CmoCh06G012440	Cucurbita moschata (Rifu)	cmacmoB834
CmaCh06G012380	CmoCh14G019560	Cucurbita moschata (Rifu)	cmacmoB796
CmaCh06G012380	Lsi05G018530	Bottle gourd (USVL1VR-Ls)	cmalsiB762
CmaCh06G012380	Cp4.1LG03g18010	Cucurbita pepo (Zucchini)	cmacpeB836
CmaCh06G012380	Cp4.1LG08g02830	Cucurbita pepo (Zucchini)	cmacpeB851
CmaCh06G012380	MELO3C006302.2	Melon (DHL92) v3.6.1	cmamedB874
CmaCh06G012380	CsaV3_3G010840	Cucumber (Chinese Long) v3	cmacucB0981
CmaCh06G012380	Cla97C05G083850	Watermelon (97103) v2	cmawmbB863
CmaCh06G012380	Bhi01G000152	Wax gourd	cmawgoB1020
CmaCh06G012380	CsGy3G010800	Cucumber (Gy14) v2	cgybcmaB445
CmaCh06G012380	Carg06299	Silver-seed gourd	carcmaB1324
CmaCh06G012380	Carg24771	Silver-seed gourd	carcmaB0235

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G012380	CmaCh14G019030	Cucurbita maxima (Rimu)	cmacmaB282

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G012380	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G012380	Watermelon (97103) v2	cmawmbB856
CmaCh06G012380	Watermelon (97103) v2	cmawmbB865
CmaCh06G012380	Wax gourd	cmawgoB1007
CmaCh06G012380	Cucurbita maxima (Rimu)	cmacmaB369
CmaCh06G012380	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G012380	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G012380	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G012380	Cucurbita moschata (Rifu)	cmacmoB837
CmaCh06G012380	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G012380	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G012380	Melon (DHL92) v3.5.1	cmameB760
CmaCh06G012380	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G012380	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G012380	Watermelon (Charleston Gray)	cmawcgB745
CmaCh06G012380	Watermelon (97103) v1	cmawmB798
CmaCh06G012380	Watermelon (97103) v1	cmawmB811
CmaCh06G012380	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G012380	Bottle gourd (USVL1VR-Ls)	cmalsiB764
CmaCh06G012380	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G012380	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G012380	Silver-seed gourd	carcmaB0236
CmaCh06G012380	Silver-seed gourd	carcmaB1325
CmaCh06G012380	Silver-seed gourd	carcmaB1494