CmaCh06G009860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G009860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	oxidoreductases, acting on NADH or NADPH
Location	Cma_Chr06 : 6680645 .. 6682668 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACACTTTTTATTTTCACTATGGCGGGTCGTCTTCGTCGCTCCATGTTTCGTCTTTCTTCCATTAAGCGACCTTTTATCCATGGTGGCAGTAATTCAAGACAAGATTCAGGTCCATATCCTTCAACCAGCAAAGAGTCGTCGATGGAACCACGGGCTCGCTCACCGTCGCTTTCACCCAAGAGAGAGTCCGTTGCTGCTTCTCCGATGTACTCTGTGAAGAAGGTTGCTTCACCATCTCCTTCTCCATCGTATGGAGGTTCAGCTGGAGGAGTGATCAACTCACAACCGAAGGCTGTAGATGAATACCTTAAGGATAAACCTACTACTCAACCCAGGTTGGATACACTAAACTCAAACACTTCTATATGTTAGTCATCATCTATATGCTAAGGACCATTGGTTGCACGTCAATAGTGGTTTATATTAAAAAAACAAAATTTGCATGTAGATAGATTTTTTTATAAGAGTTAGAAATCTGTCTTGTGGAGTTTTAAAAACTTTGAGGCAAAGTCTCGAAAGGACAATATCTATTAGCGATGTGTTTGGCCGTTACGAATGGTATTAGAGCTAGATATCGAGAGATGTGCTACTAAGCTTCGAAGAGGGTGGACACGAGGCAATGTGCTAGGACGTTGGGCTCTGAAGGAGTGGACACAAAGTAGTGTGCCAGCAAAGACACTGGACCCCAAGGGGTGGACATGAAGTGGTGTGCCAGCAAGGACGTTGGACCTCGAAACGGGTGGACACAAAGGAGTGTGCCAGCAAAGACGCTGGGCCCCAAAGGGTGGACACAAAACAGTGTGCTAGCAAAGACGCTAGGCCTCGATGGGGGTGGACACAATGCAATGTGCCAACAAGGACTCTGGGCCACGAAGAGGATGGATTTGGTGGGTTTCACATCGATTGGAGAAGGGAACGAGTACCAGTGAGGACGTTGGGCCCTGAAGGGGATGGATCGTGAGATACCAGTTCGGGTGGAGAACAAAGACGTTAGGCCCTGAAGGGGTGGATTGTGAGATCTCAATTGGGGTGGAGAACGAAAAAAAGTGGAAACATTTCCCAGACATACGCGTTTTAAAAACCTCATGGAGAAGTCCGAAAGGGAAAACTCGAAGAGGAGAAGCGGTTATATTATATATTATTAAATTCAAAACCTTAATTAAGTTGACAAACTCTAACATATTTAGTCATTTACTCTGTATTCTTGACACAGATCTCCTGAAACCGAGCCTAAAGCGGTGGTCGGAAAAGCCATGAAGAAAGTGATTGATTCGGATTGTCACGGCGAGTCGAGCAAAACGACGATGACATCCCACAAGCATGAGCCAAATACAATAAAGATTGCAGGAGAAAATCATGGAGCAGTAATGGAAATCTTCGAGTTAAAAGGGGAAGGGGGAGATATGATAGAGAAGAAAGAGACATTTAGAAGAACATCAAACAGAAAGGCAAAGGATCAAAACAAGGAAGGGTGTAAGGAGAAGAAGGGCGAAAGCACTTATTTGAACAGCAATGTTCAGGGCGTAAACAATTCTATTCTTTACGGTGCTTCTTTGGCTCACCATGACCCGGGTTTGCACCACGCTCTCTCCTTAAAACCATGAGTAACCTCATGATTGGAGTCGGGAAATGTAATCACATGATTAAAGATATTTAGTACTAATATCATATTTGAGGATATCTTTGCATTTATTGTTTTTTCCAATTATTACTATTTTCATATTCTTGTAATTTATTTGATTATAAATAGAGAACTTTTACTTTCTTCATCATGGCCTTGAACTCTTGAACTCTAATTTCCAGTTCGAGCGAAAATTGGATGTGCAGTATTTCTCTACCCACAGCATACGCATACACACATGGACTCTACAAGGTGAGCCTATACGTGGTCTAAGTCTGCCCTTCAATTAGCCATGCTCATGCAGCTGGAACCATGGAGGGAAAGGAGTCTGCATAATATCATGGGGTACATAGATATCATAATGTATTTGTTCGTACTAATCATAACGGAGAAGTATCCC

mRNA sequence

CAAACACTTTTTATTTTCACTATGGCGGGTCGTCTTCGTCGCTCCATGTTTCGTCTTTCTTCCATTAAGCGACCTTTTATCCATGGTGGCAGTAATTCAAGACAAGATTCAGGTCCATATCCTTCAACCAGCAAAGAGTCGTCGATGGAACCACGGGCTCGCTCACCGTCGCTTTCACCCAAGAGAGAGTCCGTTGCTGCTTCTCCGATGTACTCTGTGAAGAAGGTTGCTTCACCATCTCCTTCTCCATCGTATGGAGGTTCAGCTGGAGGAGTGATCAACTCACAACCGAAGGCTGTAGATGAATACCTTAAGGATAAACCTACTACTCAACCCAGATCTCCTGAAACCGAGCCTAAAGCGGTGGTCGGAAAAGCCATGAAGAAAGTGATTGATTCGGATTGTCACGGCGAGTCGAGCAAAACGACGATGACATCCCACAAGCATGAGCCAAATACAATAAAGATTGCAGGAGAAAATCATGGAGCAGTAATGGAAATCTTCGAGTTAAAAGGGGAAGGGGGAGATATGATAGAGAAGAAAGAGACATTTAGAAGAACATCAAACAGAAAGGCAAAGGATCAAAACAAGGAAGGGTGTAAGGAGAAGAAGGGCGAAAGCACTTATTTGAACAGCAATGTTCAGGGCGTAAACAATTCTATTCTTTACGGTGCTTCTTTGGCTCACCATGACCCGGGTTTGCACCACGCTCTCTCCTTAAAACCATGAGTAACCTCATGATTGGAGTCGGGAAATGTAATCACATGATTAAAGATATTTAGTACTAATATCATATTTGAGGATATCTTTGCATTTATTGTTTTTTCCAATTATTACTATTTTCATATTCTTGTAATTTATTTGATTATAAATAGAGAACTTTTACTTTCTTCATCATGGCCTTGAACTCTTGAACTCTAATTTCCAGTTCGAGCGAAAATTGGATGTGCAGTATTTCTCTACCCACAGCATACGCATACACACATGGACTCTACAAGGTGAGCCTATACGTGGTCTAAGTCTGCCCTTCAATTAGCCATGCTCATGCAGCTGGAACCATGGAGGGAAAGGAGTCTGCATAATATCATGGGGTACATAGATATCATAATGTATTTGTTCGTACTAATCATAACGGAGAAGTATCCC

Coding sequence (CDS)

ATGGCGGGTCGTCTTCGTCGCTCCATGTTTCGTCTTTCTTCCATTAAGCGACCTTTTATCCATGGTGGCAGTAATTCAAGACAAGATTCAGGTCCATATCCTTCAACCAGCAAAGAGTCGTCGATGGAACCACGGGCTCGCTCACCGTCGCTTTCACCCAAGAGAGAGTCCGTTGCTGCTTCTCCGATGTACTCTGTGAAGAAGGTTGCTTCACCATCTCCTTCTCCATCGTATGGAGGTTCAGCTGGAGGAGTGATCAACTCACAACCGAAGGCTGTAGATGAATACCTTAAGGATAAACCTACTACTCAACCCAGATCTCCTGAAACCGAGCCTAAAGCGGTGGTCGGAAAAGCCATGAAGAAAGTGATTGATTCGGATTGTCACGGCGAGTCGAGCAAAACGACGATGACATCCCACAAGCATGAGCCAAATACAATAAAGATTGCAGGAGAAAATCATGGAGCAGTAATGGAAATCTTCGAGTTAAAAGGGGAAGGGGGAGATATGATAGAGAAGAAAGAGACATTTAGAAGAACATCAAACAGAAAGGCAAAGGATCAAAACAAGGAAGGGTGTAAGGAGAAGAAGGGCGAAAGCACTTATTTGAACAGCAATGTTCAGGGCGTAAACAATTCTATTCTTTACGGTGCTTCTTTGGCTCACCATGACCCGGGTTTGCACCACGCTCTCTCCTTAAAACCATGA

Protein sequence

MAGRLRRSMFRLSSIKRPFIHGGSNSRQDSGPYPSTSKESSMEPRARSPSLSPKRESVAASPMYSVKKVASPSPSPSYGGSAGGVINSQPKAVDEYLKDKPTTQPRSPETEPKAVVGKAMKKVIDSDCHGESSKTTMTSHKHEPNTIKIAGENHGAVMEIFELKGEGGDMIEKKETFRRTSNRKAKDQNKEGCKEKKGESTYLNSNVQGVNNSILYGASLAHHDPGLHHALSLKP

Homology

[Close]

BLAST of CmaCh06G009860 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.5e-38
Identity = 121/253 (47.83%), Postives = 152/253 (60.08%), Query Frame = 1


Query: 1   MAGRLRRSMFRLSSIKRPFIHGGSNSRQDSGPY-----PSTSKESSMEPRARSPSLSPKR 60
           MAGR    ++R SS  RP     + S QDS  Y     PS+++++S+EPR+  P ++ +R
Sbjct: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYPSSARDTSLEPRSSPPRVALRR 60

Query: 61  ES--VAASPMYSVKKVASPSPSPSYGGSAGGVINSQPKAVDEYLKDKPTTQPRSPETEPK 120
           +   + ASP YS+KK  SP  SPSY   A   I+S  K VDEY K KP TQPRSPE + K
Sbjct: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120

Query: 121 AVV--GKAMKKVIDSDCHGESSKTTMTSHKH--EPNTIKIAGENHGAVMEIFE-LKGEGG 180
             +     ++KV  SD + ESSK T++SHK   +PN I I GEN GAVMEI E  K EGG
Sbjct: 121 PGIFHKSTVEKVTKSDRYHESSK-TLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGG 180

Query: 181 DMIEK-KETFR--RTSNRKAKDQNKEGCKEKKGE---STYLNSNVQGVNNSILYGASLAH 236
            MI+K KET R    +N  A DQN E  K        +T+LNSN Q VNNS+LY A+L H
Sbjct: 181 HMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTH 240

[Close]

BLAST of CmaCh06G009860 vs. TrEMBL
Match: A0A0B2Q4C1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_033820 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 42/104 (40.38%), Postives = 55/104 (52.88%), Query Frame = 1


Query: 147 IKIAGENHGAVMEIFEL-----------KGEGG---DMIEKKETFRRTSNRKAKDQNKEG 206
           I IAGEN GA ME+ +            KG      D +E + +         KD+N++G
Sbjct: 60  ITIAGENRGAYMELIQSPKKHDPKYLHKKGNSNINVDGVESEGSSAEEGTVNKKDKNQKG 119

Query: 207 CKEKKGE-STYLNSNVQGVNNSILYGASLAHHDPGLHHALSLKP 236
                   S Y+NSNVQ VNNS+LY AS +HHDPG+  +LS KP
Sbjct: 120 TSSSSFPMSAYMNSNVQCVNNSLLYHASCSHHDPGVRLSLSKKP 163

[Close]

BLAST of CmaCh06G009860 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 78/251 (31.08%), Postives = 113/251 (45.02%), Query Frame = 1


Query: 10  FRLSSIKRPFIHGGSNSRQDSGPYPSTSKESSMEPRARSPSLSP----------KRESVA 69
           F+ S IK+      S  ++ S P PS+ K S     +    LSP          +R S  
Sbjct: 50  FQTSPIKQRTPRLSSPVKKFSSP-PSSPKYSGAGTVSPRKPLSPPPVHNRYEGERRTSAT 109

Query: 70  ASPMYSVKKVASPSPSPS---YGGSAGGVINSQPKAVDE-YLKDKP--TTQPRSP-ETEP 129
            SP        SP PSPS   +      V    P A+    ++ +P  + +PRSP E E 
Sbjct: 110 TSPKTFKPTHISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQ 169

Query: 130 KAVVGKAMKK--------VIDSDCHGESSKTTMTSHKH-EPNTIKIAGENHGAVMEIFEL 189
           K ++ +               +D +G S       H+  + + I I GEN GAVM I + 
Sbjct: 170 KKILYQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQ- 229

Query: 190 KGEGGDMIEKKETFRRTSNRKAKDQNKEGCKEKKGESTYLNSNVQGVNNSILYGASLAHH 235
             +G ++I+KK T  ++   + K          K   +++NSN QGVNNSILY +SL+H 
Sbjct: 230 SSDGSEVIKKKPTVGQSKENEEKTNKSNSNYPGK---SFMNSNFQGVNNSILYNSSLSHR 289

[Close]

BLAST of CmaCh06G009860 vs. TrEMBL
Match: B9GR50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17590g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 71/241 (29.46%), Postives = 99/241 (41.08%), Query Frame = 1


Query: 24  SNSRQDSGPYPSTSKESSMEPRARSPSLSPKRESVAASPMYSVKKVASPSPSPSYGGSAG 83
           +N+ +   P PS     +++P  ++P  SPK    A  P         PS   SY     
Sbjct: 208 TNATRVPSPGPSLR---TIKPAVQTPPQSPKPRPTAPPPS---PLTLPPSQVKSYADLEP 267

Query: 84  GV--INSQPKAVDEYLKDKPTTQPRSPETEPKAV---VGKAMKKVIDSDCH----GESSK 143
            +  +  Q   + +   DKP     S      ++   + +  K+    D      G   K
Sbjct: 268 KIPLVAEQKTVLVQKTFDKPKVARDSQRDFADSLSSGIARLAKQETTKDVQTKEKGNRKK 327

Query: 144 TTMTSHKHEPNTIKIAGENHGAVMEIFEL-------------------KGEGGDMIEKKE 203
            +  S       I IAGEN GA ME+                      K EG D    +E
Sbjct: 328 NSSDSEDGGMKVITIAGENKGAFMEVIRSPKKQVFEGTSHFLHKKGNPKSEGSDSSSSEE 387

Query: 204 TFRRTSNRKAKDQNKEG-CKEKKGESTYLNSNVQGVNNSILYGASLAHHDPGLHHALSLK 236
                 N K KD+N  G        S+++NSNVQGVNNSI+Y +S +HHDPG+H ALS K
Sbjct: 388 -----GNSKKKDKNPNGKAMGPSPLSSFMNSNVQGVNNSIVYNSSCSHHDPGVHVALSRK 437

[Close]

BLAST of CmaCh06G009860 vs. TrEMBL
Match: A0A103XE28_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009014 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 68/232 (29.31%), Postives = 96/232 (41.38%), Query Frame = 1


Query: 40  SSMEPRARSPSLSPKRESVAASPMYSVKKVASPSPSPSYGGSAGGVIN--SQPKAVDEYL 99
           SS  P  RS S++P   + A+SP   +K     SP P+        ++  S P    +  
Sbjct: 295 SSPPPSPRSRSIAPSMTTTASSPPKIIKLPEKTSPPPTTIKPLSRAVSPLSLPSLKHKSY 354

Query: 100 KDKP--------TTQPRSPETEPKAVVGKAMKKVIDSDCHGESSKTTMTSHKHEP----- 159
            + P        T   +  + + K       ++ I    H  S K  MT     P     
Sbjct: 355 NEIPPETEFKQKTMHVQETKEKHKGSANSDFRRHIGGGTH--SPKHDMTKKPEIPKKHWD 414

Query: 160 ------NTIKIAGENHGAVMEIF---ELKGEGGDMIEK-------------KETFRRTSN 219
                 + I IAGEN GA+M++    + K E G+                  +T +  S 
Sbjct: 415 SENPGKSIITIAGENRGAIMKLIPSGDKKDEFGNSSNNIHIRRDNPTSSSDGKTLKTESE 474

Query: 220 RKAKDQNKEGCKEKKGESTYLNSNVQGVNNSILYGASLAHHDPGLHHALSLK 235
           R AK +NK         + +LNSNVQGVNNSILY     HHDPG+H +LS K
Sbjct: 475 RMAKAKNKNKNSNSLLTTAFLNSNVQGVNNSILYNCVTNHHDPGIHLSLSRK 524

[Close]

BLAST of CmaCh06G009860 vs. TAIR10
Match: AT1G63310.1 (AT1G63310.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-06
Identity = 41/116 (35.34%), Postives = 55/116 (47.41%), Query Frame = 1


Query: 120 MKKVIDSDCHGESSKTTMTSHKHEPNTIKI---AGENHGAVMEIFELKGEGGDMIEKKET 179
           +K +I S  H    K   + +  E + I++   +G N GA M+  EL    GD       
Sbjct: 23  LKNMISSLTHMGGDKAGPSQYDEEEDGIRVITLSGSNLGATMKT-ELDNNHGD------- 82

Query: 180 FRRTSNRKAKDQNKEGCKEKKGESTYLNSNVQGVNNSILYGASLAHHDPGLHHALS 233
                    +DQN  G  E    STY+NSN Q VNNSI+ GA    HDPG+H  +S
Sbjct: 83  ---------RDQN--GDHELDFLSTYVNSNFQAVNNSIMIGAKYETHDPGVHLDIS 119

[Close]

BLAST of CmaCh06G009860 vs. NCBI nr
Match: gi|659074886|ref|XP_008437848.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 117/251 (46.61%), Postives = 147/251 (58.57%), Query Frame = 1


Query: 1   MAGRLRRSMFRLSSIKRPFIHGGSNSRQDSGPY-----PSTSKESSMEPRARSPSLSPKR 60
           MAGR    M+R SS  RP     + S QDS  Y     PS ++++S+EPR+  P +S ++
Sbjct: 1   MAGRNFGRMYRFSSANRPLAPATNTSGQDSAQYDRRQYPSATRDTSLEPRSSPPRISLRK 60

Query: 61  ES--VAASPMYSVKKVASPSPSPSYGGSAGGVINSQPKAVDEYLKDKPTTQPRSPETEPK 120
           +   + ASP YS+KK  SP  SP Y G A   I+S PK VDEY K KP TQPRSPE + K
Sbjct: 61  DDPPLPASPTYSIKKATSPPSSPPYRGMAAREISSPPKMVDEYPKYKPITQPRSPEAKQK 120

Query: 121 AVVGK--AMKKVIDSDCHGESSKTTMTSHKHEPNTIKIAGENHGAVMEIFE-LKGEGGDM 180
             + K   ++KV  SD + E SK   +    +PN I I GEN GAVMEI E  K EGG M
Sbjct: 121 PGIHKTTTVEKVTKSDRYHEPSKAVSSHKGQQPNAINIKGENVGAVMEIVESSKREGGHM 180

Query: 181 IEK-KETFR--RTSNRKAKDQNKEGCKEKKGE---STYLNSNVQGVNNSILYGASLAHHD 236
           I+K KET R    +N  A DQN E  K        +T+LNSN Q VNNS+LY A+L + D
Sbjct: 181 IKKIKETARGILNNNDMANDQNNEASKTTNSSMPTNTFLNSNFQSVNNSLLYNANLTYRD 240

[Close]

BLAST of CmaCh06G009860 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 7.9e-38
Identity = 121/253 (47.83%), Postives = 152/253 (60.08%), Query Frame = 1


Query: 1   MAGRLRRSMFRLSSIKRPFIHGGSNSRQDSGPY-----PSTSKESSMEPRARSPSLSPKR 60
           MAGR    ++R SS  RP     + S QDS  Y     PS+++++S+EPR+  P ++ +R
Sbjct: 1   MAGRNFGRLYRFSSANRPLAPVTNTSGQDSAQYDGRRYPSSARDTSLEPRSSPPRVALRR 60

Query: 61  ES--VAASPMYSVKKVASPSPSPSYGGSAGGVINSQPKAVDEYLKDKPTTQPRSPETEPK 120
           +   + ASP YS+KK  SP  SPSY   A   I+S  K VDEY K KP TQPRSPE + K
Sbjct: 61  DDQPLPASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKPNTQPRSPEAKQK 120

Query: 121 AVV--GKAMKKVIDSDCHGESSKTTMTSHKH--EPNTIKIAGENHGAVMEIFE-LKGEGG 180
             +     ++KV  SD + ESSK T++SHK   +PN I I GEN GAVMEI E  K EGG
Sbjct: 121 PGIFHKSTVEKVTKSDRYHESSK-TLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGG 180

Query: 181 DMIEK-KETFR--RTSNRKAKDQNKEGCKEKKGE---STYLNSNVQGVNNSILYGASLAH 236
            MI+K KET R    +N  A DQN E  K        +T+LNSN Q VNNS+LY A+L H
Sbjct: 181 HMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTH 240

[Close]

BLAST of CmaCh06G009860 vs. NCBI nr
Match: gi|1009176781|ref|XP_015869615.1| (PREDICTED: vegetative cell wall protein gp1-like [Ziziphus jujuba])

HSP 1 Score: 69.7 bits (169), Expect = 7.7e-09
Identity = 46/119 (38.66%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 137 MTSHKHEPNTIKIAGENHGAVMEIFELK-------GEGGDMIEKKETFRRTSNRKAKDQN 196
           +T ++     I IAGEN GA ME+ +         GE    + KK T     N    + N
Sbjct: 278 LTEYEDGMKIITIAGENRGAFMEVIQSPNKKQPAGGENSSYLHKKGTHVVRKNGSDAETN 337

Query: 197 K-----EGCKEKKGE--------STYLNSNVQGVNNSILYGASLAHHDPGLHHALSLKP 236
                 EG   +KG+        S ++NSNVQG+NNSI+Y +S  HHDPG+H ALS KP
Sbjct: 338 SSTSSDEGSPNRKGKAKQKALPMSAFMNSNVQGINNSIVYNSSCTHHDPGVHLALSRKP 396

[Close]

BLAST of CmaCh06G009860 vs. NCBI nr
Match: gi|1009176382|ref|XP_015869402.1| (PREDICTED: vegetative cell wall protein gp1-like [Ziziphus jujuba])

HSP 1 Score: 69.7 bits (169), Expect = 7.7e-09
Identity = 46/119 (38.66%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 137 MTSHKHEPNTIKIAGENHGAVMEIFELK-------GEGGDMIEKKETFRRTSNRKAKDQN 196
           +T ++     I IAGEN GA ME+ +         GE    + KK T     N    + N
Sbjct: 286 LTEYEDGMKIITIAGENRGAFMEVIQSPNKKQPAGGENSSYLHKKGTHVVRKNGSDAETN 345

Query: 197 K-----EGCKEKKGE--------STYLNSNVQGVNNSILYGASLAHHDPGLHHALSLKP 236
                 EG   +KG+        S ++NSNVQG+NNSI+Y +S  HHDPG+H ALS KP
Sbjct: 346 SSTSSDEGSPNRKGKAKQKALPMSAFMNSNVQGINNSIVYNSSCTHHDPGVHLALSRKP 404

[Close]

BLAST of CmaCh06G009860 vs. NCBI nr
Match: gi|1009177646|ref|XP_015870087.1| (PREDICTED: vegetative cell wall protein gp1-like [Ziziphus jujuba])

HSP 1 Score: 69.7 bits (169), Expect = 7.7e-09
Identity = 46/119 (38.66%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 137 MTSHKHEPNTIKIAGENHGAVMEIFELK-------GEGGDMIEKKETFRRTSNRKAKDQN 196
           +T ++     I IAGEN GA ME+ +         GE    + KK T     N    + N
Sbjct: 286 LTEYEDGMKIITIAGENRGAFMEVIQSPNKKQPAGGENSSYLHKKGTHVVRKNGSDAETN 345

Query: 197 K-----EGCKEKKGE--------STYLNSNVQGVNNSILYGASLAHHDPGLHHALSLKP 236
                 EG   +KG+        S ++NSNVQG+NNSI+Y +S  HHDPG+H ALS KP
Sbjct: 346 SSTSSDEGSPNRKGKAKQKALPMSAFMNSNVQGINNSIVYNSSCTHHDPGVHLALSRKP 404

The following BLAST results are available for this feature:

BLAST of CmaCh06G009860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G009860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3R5_CUCSA	5.5e-38	47.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1	[more]
A0A0B2Q4C1_GLYSO	1.9e-06	40.38	Uncharacterized protein OS=Glycine soja GN=glysoja_033820 PE=4 SV=1	[more]
A0A0A0L5T3_CUCSA	2.5e-06	31.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1	[more]
B9GR50_POPTR	3.2e-06	29.46	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17590g PE=4 SV=1	[more]
A0A103XE28_CYNCS	7.2e-06	29.31	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009014 PE=4 ...	[more]

BLAST of CmaCh06G009860 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63310.1	6.5e-06	35.34	unknown protein	[more]

BLAST of CmaCh06G009860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074886\|ref\|XP_008437848.1\|	3.5e-38	46.61	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo]	[more]
gi\|449432014\|ref\|XP_004133795.1\|	7.9e-38	47.83	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus]	[more]
gi\|1009176781\|ref\|XP_015869615.1\|	7.7e-09	38.66	PREDICTED: vegetative cell wall protein gp1-like [Ziziphus jujuba]	[more]
gi\|1009176382\|ref\|XP_015869402.1\|	7.7e-09	38.66	PREDICTED: vegetative cell wall protein gp1-like [Ziziphus jujuba]	[more]
gi\|1009177646\|ref\|XP_015870087.1\|	7.7e-09	38.66	PREDICTED: vegetative cell wall protein gp1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009860.1	CmaCh06G009860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 149..235 score: 3.4
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 149..235 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G009860	Cla021125	Watermelon (97103) v1	cmawmB803
CmaCh06G009860	ClCG05G000580	Watermelon (Charleston Gray)	cmawcgB742
CmaCh06G009860	CmoCh14G021920	Cucurbita moschata (Rifu)	cmacmoB795

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G009860	CmaCh14G021290	Cucurbita maxima (Rimu)	cmacmaB281

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G009860	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G009860	Cucumber (Chinese Long) v3	cmacucB0980
CmaCh06G009860	Watermelon (97103) v2	cmawmbB857
CmaCh06G009860	Watermelon (97103) v2	cmawmbB859
CmaCh06G009860	Watermelon (97103) v2	cmawmbB862
CmaCh06G009860	Wax gourd	cmawgoB1011
CmaCh06G009860	Wax gourd	cmawgoB1021
CmaCh06G009860	Cucurbita maxima (Rimu)	cmacmaB022
CmaCh06G009860	Cucurbita maxima (Rimu)	cmacmaB023
CmaCh06G009860	Cucumber (Gy14) v1	cgycmaB0725
CmaCh06G009860	Cucumber (Gy14) v1	cgycmaB0728
CmaCh06G009860	Cucurbita moschata (Rifu)	cmacmoB799
CmaCh06G009860	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G009860	Cucurbita moschata (Rifu)	cmacmoB832
CmaCh06G009860	Wild cucumber (PI 183967)	cmacpiB830
CmaCh06G009860	Wild cucumber (PI 183967)	cmacpiB843
CmaCh06G009860	Cucumber (Chinese Long) v2	cmacuB818
CmaCh06G009860	Cucumber (Chinese Long) v2	cmacuB830
CmaCh06G009860	Melon (DHL92) v3.5.1	cmameB766
CmaCh06G009860	Melon (DHL92) v3.5.1	cmameB771
CmaCh06G009860	Watermelon (Charleston Gray)	cmawcgB738
CmaCh06G009860	Watermelon (97103) v1	cmawmB799
CmaCh06G009860	Cucurbita pepo (Zucchini)	cmacpeB834
CmaCh06G009860	Cucurbita pepo (Zucchini)	cmacpeB839
CmaCh06G009860	Cucurbita pepo (Zucchini)	cmacpeB848
CmaCh06G009860	Bottle gourd (USVL1VR-Ls)	cmalsiB760
CmaCh06G009860	Bottle gourd (USVL1VR-Ls)	cmalsiB770
CmaCh06G009860	Cucumber (Gy14) v2	cgybcmaB430
CmaCh06G009860	Cucumber (Gy14) v2	cgybcmaB443
CmaCh06G009860	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G009860	Melon (DHL92) v3.6.1	cmamedB873
CmaCh06G009860	Silver-seed gourd	carcmaB0163
CmaCh06G009860	Silver-seed gourd	carcmaB0176
CmaCh06G009860	Silver-seed gourd	carcmaB0177
CmaCh06G009860	Silver-seed gourd	carcmaB1376