CmaCh06G007310 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G007310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Histone deacetylase complex subunit SAP18, putative
Location	Cma_Chr06 : 3704505 .. 3706179 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAGAAGCTCAGTAACACACCGACCCATGGACAAGAGAAGCAGGGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTTCCTCCGCCGTCTCAGGCCAAAGCCCCGCCGCCGCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTTCTCTTAGGGCTTGCTTCTTCCTCTCGTTTTTTTTTTTCTTTTCTTCACACCGCTGAGATAAGTTCACGGTTTTTTGAATCTTTGTTTGTTATTCAAATGAAACTTATCTGCTTTTCGTTTTGTTGCAATTTTCGCTTCCTTCCGTGATGGTGATTTCAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTGCGTTTGAATTCTTTGAGAAGCCTTCTTGTTCGATTTATCTTTGTTCTTTTAAAATTTGAGATGATTGTGATATGTGTCATGGCGGAAAATGTCCTGTTTTCGGTTCTTGGTATCTGTTTGACATTGTCGACCTGCTACCTTTTATGATACTTCTGAGTTTATTAGCGATTGTGCATTTCTTATACTTCGTTCCATGATTTTTGTTGTGTGAAGATTATGTTGAAGGGTCCTTTTTCCACATGATTTTTTTTCTTGATTGGTGCACTTGGGAGGAGTAATGAGAAAACTTCACTTTGATATTAGAATTGGCGTGGGGTTCAGTTCATATATTCACATCTTACTGCAGACGGTATACAGGATATGCTTCATTTACATTTTTGCAGGTTGGAAGTCACCACACCGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTATGCAGAAAACCTACACTGTTCTGTTTCTTTTCTATCGTTTCTCCATCTGTTCTTGCTGCTTCTGTTCTGTATTTGATAAATGGCCGTCTGCTTTCAGGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGGAATGCCAAACTTTCTTTTGCCTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACCGGTGAGTGATCGTTAACAAAAATGTCACCTGCAGACTTCAAATTTTACCTAATCATTTATCTCATATACAATTGTACTAAATGTTTAGCTGTTCACTTCCTAAATGCACTACTTGTATAGATAAATTGTTGTGATTTCTTAATATGAAGACGTTTTGATCATTCTTAAGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGATTAGATGGCAGCAAGGCATTGGGTGAACTGGATTTCCAGGTAAAAGTTAACATTAGGGCTCTTGAATTGAGTTTCTTGCAAGTTCTGAGGAAACTGATGTTTCTTCTGCTATGTTTTTGAATTTGAAAAATGTAGATTGGAGATTATTTGGACGTGGCAATCATGTAGAAATCTGGGTTACATGGAAGTGATGATGCTACTATTTAGTTGGAGAGTGAGTGTTATCAAATGTTTTCTGCATTTTTTAATTTCTATATTCAAATGTCTTGTGAAGGTAGAAGAACATATTGTATTGATGGTGACTTTGATTCTGTCATCTGGTTCTAGTTTGAATCCCATTATTTAATAACCTCTTCTTATATTTCCCCAAATATGTGCTTTTAGATCTCTATGTTTTACA

mRNA sequence

AATCAGAAGCTCAGTAACACACCGACCCATGGACAAGAGAAGCAGGGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTTCCTCCGCCGTCTCAGGCCAAAGCCCCGCCGCCGCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTTGGAAGTCACCACACCGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGGAATGCCAAACTTTCTTTTGCCTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACCGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGATTAGATGGCAGCAAGGCATTGGGTGAACTGGATTTCCAGATTGGAGATTATTTGGACGTGGCAATCATGTAGAAATCTGGGTTACATGGAAGTGATGATGCTACTATTTAGTTGGAGAGTGAGTGTTATCAAATGTTTTCTGCATTTTTTAATTTCTATATTCAAATGTCTTGTGAAGGTAGAAGAACATATTGTATTGATGGTGACTTTGATTCTGTCATCTGGTTCTAGTTTGAATCCCATTATTTAATAACCTCTTCTTATATTTCCCCAAATATGTGCTTTTAGATCTCTATGTTTTACA

Coding sequence (CDS)

ATGGACAAGAGAAGCAGGGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTTCCTCCGCCGTCTCAGGCCAAAGCCCCGCCGCCGCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTTGGAAGTCACCACACCGATGAGGATTTTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGGAATGCCAAACTTTCTTTTGCCTTTGTTTATCCCGACAAGCGTGGTCGATTTGTTTTAAAACCGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGATTAGATGGCAGCAAGGCATTGGGTGAACTGGATTTCCAGATTGGAGATTATTTGGACGTGGCAATCATGTAG

Protein sequence

MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM

Homology

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BLAST of CmaCh06G007310 vs. Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.7e-48
Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 13  AATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDF 72
           A  A  QG    RPLPPP +      PPR + EPVDREKTCPLLLRVFTK G HHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRG-VNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + ++ V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GTTHSYGNGRRLDGSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ D SK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

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BLAST of CmaCh06G007310 vs. Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 45  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 164
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 165 VAI 166
           +AI
Sbjct: 138 IAI 137

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BLAST of CmaCh06G007310 vs. Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 45  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 164
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 165 VAI 166
           +AI
Sbjct: 138 IAI 137

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BLAST of CmaCh06G007310 vs. Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 45  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 164
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 165 VAI 166
           +AI
Sbjct: 138 IAI 137

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BLAST of CmaCh06G007310 vs. Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 45  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 164
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 165 VAI 166
           +AI
Sbjct: 138 IAI 137

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BLAST of CmaCh06G007310 vs. TrEMBL
Match: A0A0A0L751_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038150 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.8e-80
Identity = 154/166 (92.77%), Postives = 156/166 (93.98%), Query Frame = 1


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310 vs. TrEMBL
Match: W9S970_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023149 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.7e-66
Identity = 133/174 (76.44%), Postives = 144/174 (82.76%), Query Frame = 1


Query: 1   MDKRSRDEKMSGAATAPPQGRP-------SARPLPPPSQAKAPPPP-PRARFEPVDREKT 60
           M+KRSRD+K++G    PP  RP         RP PPP  ++APPP  PR RFEPVDREKT
Sbjct: 1   MEKRSRDDKIAGGVRPPPHSRPLPVTGSAGGRPGPPPPHSRAPPPVIPRPRFEPVDREKT 60

Query: 61  CPLLLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA 120
           CPLLLRVFTK+G HH +EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAP ARRRNA
Sbjct: 61  CPLLLRVFTKLGGHHNEEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRNA 120

Query: 121 KLSFAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           KLSFAFVYPDKRGRFVLK VG THS GNGRR+D  KALG LDFQIGDYLDVAI+
Sbjct: 121 KLSFAFVYPDKRGRFVLKQVGMTHSCGNGRRIDDDKALGGLDFQIGDYLDVAII 174

[Close]

BLAST of CmaCh06G007310 vs. TrEMBL
Match: M5WC77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012467mg PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.0e-64
Identity = 124/171 (72.51%), Postives = 143/171 (83.63%), Query Frame = 1


Query: 1   MDKRSRDEKMSGAATAPPQGR-----PSARPLPPPSQAKAPPPPPRARFEPVDREKTCPL 60
           M++R+RD+KM G     PQ +     P+ RPLPPP  ++ PPPPP  R EPVDREKTCPL
Sbjct: 1   MERRNRDDKMGGPG---PQNQAQTRGPTGRPLPPPPHSRGPPPPPPPRLEPVDREKTCPL 60

Query: 61  LLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS 120
           LLRVFTK+GSHH +EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKE+APEARRRNAKLS
Sbjct: 61  LLRVFTKIGSHHNNEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEIAPEARRRNAKLS 120

Query: 121 FAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           FAFVYPD+RG FV+K VG THSYGNGR  D +KAL + +FQIGDYLDVA++
Sbjct: 121 FAFVYPDRRGHFVVKTVGMTHSYGNGRNPDENKALNDFNFQIGDYLDVAVL 168

[Close]

BLAST of CmaCh06G007310 vs. TrEMBL
Match: A0A061DVR5_THECC (SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.3e-62
Identity = 125/157 (79.62%), Postives = 136/157 (86.62%), Query Frame = 1


Query: 10  MSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTD 69
           M+GAA A  Q R S RPLPPP  A+ PPPPPR RFEPVDREKTCPLLLRVFTK+G HH+ 
Sbjct: 1   MAGAAEA--QKRQSGRPLPPP--ARGPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSK 60

Query: 70  EDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVL 129
           EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAP +RRR+A+LSFAFVYPDK GRFV+
Sbjct: 61  EDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPASRRRDARLSFAFVYPDKNGRFVV 120

Query: 130 KPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           + VG T SYGNGRRLD  K LGEL F+IGDYLDVAIM
Sbjct: 121 REVGKTFSYGNGRRLDDGKTLGELSFEIGDYLDVAIM 153

[Close]

BLAST of CmaCh06G007310 vs. TrEMBL
Match: A0A0B0NV41_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21512 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.6e-62
Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 8   EKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHH 67
           E M+GAA   PQ R S RP PP   A+ PPPPPR RFEPVDREKTCPLLLRVFTK+G HH
Sbjct: 28  ENMAGAAE--PQKRQSGRPFPP--SARGPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHH 87

Query: 68  TDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRF 127
           + EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAP ARRR+A+LSFAFVYPDK GRF
Sbjct: 88  SKEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRF 147

Query: 128 VLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           V++ VG T SYGN RRLD SK LGEL F+IGDYLDVAIM
Sbjct: 148 VVREVGKTFSYGNVRRLDDSKTLGELSFEIGDYLDVAIM 182

[Close]

BLAST of CmaCh06G007310 vs. TAIR10
Match: AT2G45640.1 (AT2G45640.1 SIN3 associated polypeptide P18)

HSP 1 Score: 191.4 bits (485), Expect = 4.4e-49
Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 13  AATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDF 72
           A  A  QG    RPLPPP +      PPR + EPVDREKTCPLLLRVFTK G HHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRG-VNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + ++ V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GTTHSYGNGRRLDGSKALGELDFQIGDYLDVAI 166
           G T +Y N ++ D SK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of CmaCh06G007310 vs. NCBI nr
Match: gi|449460459|ref|XP_004147963.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.6e-80
Identity = 154/166 (92.77%), Postives = 156/166 (93.98%), Query Frame = 1


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310 vs. NCBI nr
Match: gi|659096143|ref|XP_008448944.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 7.7e-80
Identity = 154/166 (92.77%), Postives = 155/166 (93.37%), Query Frame = 1


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
           TKVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmaCh06G007310 vs. NCBI nr
Match: gi|703143623|ref|XP_010108064.1| (hypothetical protein L484_023149 [Morus notabilis])

HSP 1 Score: 258.5 bits (659), Expect = 8.2e-66
Identity = 133/174 (76.44%), Postives = 144/174 (82.76%), Query Frame = 1


Query: 1   MDKRSRDEKMSGAATAPPQGRP-------SARPLPPPSQAKAPPPP-PRARFEPVDREKT 60
           M+KRSRD+K++G    PP  RP         RP PPP  ++APPP  PR RFEPVDREKT
Sbjct: 1   MEKRSRDDKIAGGVRPPPHSRPLPVTGSAGGRPGPPPPHSRAPPPVIPRPRFEPVDREKT 60

Query: 61  CPLLLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA 120
           CPLLLRVFTK+G HH +EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAP ARRRNA
Sbjct: 61  CPLLLRVFTKLGGHHNEEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRNA 120

Query: 121 KLSFAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           KLSFAFVYPDKRGRFVLK VG THS GNGRR+D  KALG LDFQIGDYLDVAI+
Sbjct: 121 KLSFAFVYPDKRGRFVLKQVGMTHSCGNGRRIDDDKALGGLDFQIGDYLDVAII 174

[Close]

BLAST of CmaCh06G007310 vs. NCBI nr
Match: gi|595849354|ref|XP_007209707.1| (hypothetical protein PRUPE_ppa012467mg [Prunus persica])

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 124/171 (72.51%), Postives = 143/171 (83.63%), Query Frame = 1


Query: 1   MDKRSRDEKMSGAATAPPQGR-----PSARPLPPPSQAKAPPPPPRARFEPVDREKTCPL 60
           M++R+RD+KM G     PQ +     P+ RPLPPP  ++ PPPPP  R EPVDREKTCPL
Sbjct: 1   MERRNRDDKMGGPG---PQNQAQTRGPTGRPLPPPPHSRGPPPPPPPRLEPVDREKTCPL 60

Query: 61  LLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS 120
           LLRVFTK+GSHH +EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKE+APEARRRNAKLS
Sbjct: 61  LLRVFTKIGSHHNNEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEIAPEARRRNAKLS 120

Query: 121 FAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 167
           FAFVYPD+RG FV+K VG THSYGNGR  D +KAL + +FQIGDYLDVA++
Sbjct: 121 FAFVYPDRRGHFVVKTVGMTHSYGNGRNPDENKALNDFNFQIGDYLDVAVL 168

[Close]

BLAST of CmaCh06G007310 vs. NCBI nr
Match: gi|470125465|ref|XP_004298722.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63
Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 1


Query: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPS---QAKAPPPPPRARFEPVDREKTCPLLL 60
           M++RSRDE+M+G A A P+G P  RPLPPP    Q++ PPPPP  RFEPVDREKTCPLLL
Sbjct: 1   MERRSRDERMAGGAGAGPRG-PPGRPLPPPPSFPQSRGPPPPPPRRFEPVDREKTCPLLL 60

Query: 61  RVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA 120
           RVFTK G HHT EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKE+AP ARRRNAKLSFA
Sbjct: 61  RVFTKNGGHHTQEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEIAPAARRRNAKLSFA 120

Query: 121 FVYPDKRGRFVLKPVGTTHSYGN-GRRLDGSKALGELDFQIGDYLDVAIM 167
           FVYPDKRG +V K  G TH++GN GRRLD SK+L EL FQIGDYLDVA++
Sbjct: 121 FVYPDKRGCYVFKQAGMTHAHGNIGRRLDDSKSLNELKFQIGDYLDVAVL 169

The following BLAST results are available for this feature:

BLAST of CmaCh06G007310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAP18_ARATH	7.7e-48	66.67	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 P...	[more]
SAP18_PONAB	1.5e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1	[more]
SAP18_HUMAN	1.5e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1	[more]
SAP18_BOVIN	1.5e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1	[more]
SAP18_MOUSE	2.0e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1	[more]

BLAST of CmaCh06G007310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L751_CUCSA	1.8e-80	92.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038150 PE=4 SV=1	[more]
W9S970_9ROSA	5.7e-66	76.44	Uncharacterized protein OS=Morus notabilis GN=L484_023149 PE=4 SV=1	[more]
M5WC77_PRUPE	7.0e-64	72.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012467mg PE=4 SV=1	[more]
A0A061DVR5_THECC	2.3e-62	79.62	SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1	[more]
A0A0B0NV41_GOSAR	8.6e-62	78.62	Uncharacterized protein OS=Gossypium arboreum GN=F383_21512 PE=4 SV=1	[more]

BLAST of CmaCh06G007310 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45640.1	4.4e-49	66.67	SIN3 associated polypeptide P18	[more]

BLAST of CmaCh06G007310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460459\|ref\|XP_004147963.1\|	2.6e-80	92.77	PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus]	[more]
gi\|659096143\|ref\|XP_008448944.1\|	7.7e-80	92.77	PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]	[more]
gi\|703143623\|ref\|XP_010108064.1\|	8.2e-66	76.44	hypothetical protein L484_023149 [Morus notabilis]	[more]
gi\|595849354\|ref\|XP_007209707.1\|	1.0e-63	72.51	hypothetical protein PRUPE_ppa012467mg [Prunus persica]	[more]
gi\|470125465\|ref\|XP_004298722.1\|	1.3e-63	75.88	PREDICTED: histone deacetylase complex subunit SAP18-like [Fragaria vesca subsp....	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010516	SAP18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G007310.1	CmaCh06G007310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 20..166 score: 4.6
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 46..165 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G007310	Cucsa.320220	Cucumber (Gy14) v1	cgycmaB0897
CmaCh06G007310	Cla001154	Watermelon (97103) v1	cmawmB785
CmaCh06G007310	Csa3G038150	Cucumber (Chinese Long) v2	cmacuB825
CmaCh06G007310	MELO3C014010	Melon (DHL92) v3.5.1	cmameB764
CmaCh06G007310	ClCG00G000160	Watermelon (Charleston Gray)	cmawcgB714
CmaCh06G007310	ClCG10G003410	Watermelon (Charleston Gray)	cmawcgB727
CmaCh06G007310	CSPI03G03390	Wild cucumber (PI 183967)	cmacpiB838
CmaCh06G007310	CmoCh06G007550	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G007310	Lsi07G013700	Bottle gourd (USVL1VR-Ls)	cmalsiB775
CmaCh06G007310	Cp4.1LG08g07910	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G007310	MELO3C014010.2	Melon (DHL92) v3.6.1	cmamedB869
CmaCh06G007310	CsaV3_3G003440	Cucumber (Chinese Long) v3	cmacucB0975
CmaCh06G007310	Cla97C10G187930	Watermelon (97103) v2	cmawmbB845
CmaCh06G007310	Bhi11G000205	Wax gourd	cmawgoB0989
CmaCh06G007310	CsGy3G003350	Cucumber (Gy14) v2	cgybcmaB438
CmaCh06G007310	Carg21631	Silver-seed gourd	carcmaB1203

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G007310	Silver-seed gourd	carcmaB1285
CmaCh06G007310	Cucumber (Gy14) v2	cgybcmaB695
CmaCh06G007310	Melon (DHL92) v3.6.1	cmamedB843
CmaCh06G007310	Cucumber (Chinese Long) v3	cmacucB0990
CmaCh06G007310	Watermelon (97103) v2	cmawmbB836
CmaCh06G007310	Wax gourd	cmawgoB0998
CmaCh06G007310	Cucurbita maxima (Rimu)	cmacmaB334
CmaCh06G007310	Cucurbita maxima (Rimu)	cmacmaB354
CmaCh06G007310	Cucumber (Gy14) v1	cgycmaB0839
CmaCh06G007310	Cucurbita moschata (Rifu)	cmacmoB803
CmaCh06G007310	Cucurbita moschata (Rifu)	cmacmoB804
CmaCh06G007310	Wild cucumber (PI 183967)	cmacpiB853
CmaCh06G007310	Cucumber (Chinese Long) v2	cmacuB838
CmaCh06G007310	Melon (DHL92) v3.5.1	cmameB746
CmaCh06G007310	Watermelon (Charleston Gray)	cmawcgB733
CmaCh06G007310	Watermelon (97103) v1	cmawmB805
CmaCh06G007310	Cucurbita pepo (Zucchini)	cmacpeB813
CmaCh06G007310	Cucurbita pepo (Zucchini)	cmacpeB814