CmoCh06G007550 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G007550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Histone deacetylase complex subunit SAP18, putative
Location	Cmo_Chr06 : 3920943 .. 3922674 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAACCGAAAAACGGAAAAAATCAGAAGCTCAGTAACACACCGACCATGGACAAGAGAAGCAGAGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTCCCTCCGCCGTCTCAGGCCAAAGCTCCGCCGCCTCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTTCTATTAGGGCTTGCTTCTTCCTCTCGTTTTTTTTTTCTTTTCTTCACACCGCTGAGATAAGTTCACGGTTTCTTGAATCTTTGTTTGTTATTCAACTGAAACTTATCTGCTTTTTGTTTTGTTGCAATTTTCGCTTCCTTCCGTGATGGTGATTTCAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTGCGTTTGAATTCTTTGAGAAGCCTTCTTGTTCGATTTATCTTTGTTCTTTTAAAATTTGAGATGATTGTGAAATGCGTCATGGCGGAAAATGTCCTGTTTTCGGTTCTTGGTATCTGTTTGACATTGTCGACCTGCTACCTTTTATGATACTTCTGAGTTTATTAGCGATTGTGCATTTCTTATACTTCGTTCCATGATTCGGTTTCTTTTGTTGTGTGAAGATTGTGTTGAAGGGTCCTTTTTTCACATGATTTTTTTTTTCTTGATTGGTGCACTTGGGAGGAGTAATGAGAAAACTTCACTTTGATATTAGAATTGGCGTGGGGTTCAGTTCATGTATTTACATCTTACTGCAGACGGTATACAGGATATGCTTCATTTACATTTTTGCAGGTTGGAAGTCACCACACCGATGAGGATTTTGCCATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTATGCAGAAAACCTACACTGTTCTGTTTCTTTTCTATCGTTTCTCCATCTGTTCTTGCTGTTGCTGTTCTGTATTTGATAAATGGCTGTCTGCTTTCAGGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTCGTTTTAAAACCGGTGAGTGATCGTTAACAAAAATGTCACCTGCAGACTTCGAATGTTACCTAATCATTTATCTCATCTACAATTGTACTAAATGTTTAGCTGTTCACTTCCTAAATGCACTACTTGTATAGATAAATTGTTGTCATTTCTTAATATGAAGACGTTTTGATCATTCTTAAGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGACTAGATGGCAGCAAGGCGTTGGGTGAACTGGATTTCCAGGTAAAAATTAACATTAGGGCTCTTGAATTGAGTTTCTTGCTAGTTTCTGAGGAAACTGATGTTTCTTCTGCTATGTTTTTGAATTTGAAAAATGTAGATCGGAGATTATTTGGACGTGGCAATCATGTAGAAATCTGGGTTACATGAAAGTGATGATGCTACTATTTAGTTGGAGAGTGAATGTTATCAAATGTTTTCTGCATTTTTTTAATTTCTATATTCAAATGTCTTGTGAAGGTAGAAGAACAGATTGTATTGATTGGTAACTTTGATTCTGTCATCTGGTTCTAGTTTGAATCCCATTATTTAATAACCTCTTCTTATATTTCCCCAAATATGTACTTTTAGATCTCTATGTTTTATAGAACTTTATTTCACAAGGGAAA

mRNA sequence

ATGGCTAAACCGAAAAACGGAAAAAATCAGAAGCTCAGTAACACACCGACCATGGACAAGAGAAGCAGAGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTCCCTCCGCCGTCTCAGGCCAAAGCTCCGCCGCCTCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTTGGAAGTCACCACACCGATGAGGATTTTGCCATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTCGTTTTAAAACCGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGACTAGATGGCAGCAAGGCGTTGGGTGAACTGGATTTCCAGATCGGAGATTATTTGGACGTGGCAATCATGTAGAAATCTGGGTTACATGAAAGTGATGATGCTACTATTTAGTTGGAGAGTGAATGTTATCAAATGTTTTCTGCATTTTTTTAATTTCTATATTCAAATGTCTTGTGAAGGTAGAAGAACAGATTGTATTGATTGGTAACTTTGATTCTGTCATCTGGTTCTAGTTTGAATCCCATTATTTAATAACCTCTTCTTATATTTCCCCAAATATGTACTTTTAGATCTCTATGTTTTATAGAACTTTATTTCACAAGGGAAA

Coding sequence (CDS)

ATGGCTAAACCGAAAAACGGAAAAAATCAGAAGCTCAGTAACACACCGACCATGGACAAGAGAAGCAGAGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTCCCTCCGCCGTCTCAGGCCAAAGCTCCGCCGCCTCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTTGGAAGTCACCACACCGATGAGGATTTTGCCATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTCGTTTTAAAACCGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGACTAGATGGCAGCAAGGCGTTGGGTGAACTGGATTTCCAGATCGGAGATTATTTGGACGTGGCAATCATGTAG

Homology

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BLAST of CmoCh06G007550 vs. Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-48
Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 30  AATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDF 89
           A  A  QG    RPLPPP +      PPR + EPVDREKTCPLLLRVFTK G HHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRG-VNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 90  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPV 149
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + ++ V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 150 GTTHSYGNGRRLDGSKALGELDFQIGDYLDVAI 183
           G T +Y N ++ D SK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of CmoCh06G007550 vs. Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 62  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 121
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 122 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 181
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 182 VAI 183
           +AI
Sbjct: 138 IAI 137

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BLAST of CmoCh06G007550 vs. Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 62  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 121
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 122 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 181
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 182 VAI 183
           +AI
Sbjct: 138 IAI 137

[Close]

BLAST of CmoCh06G007550 vs. Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 62  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 121
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 122 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 181
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 182 VAI 183
           +AI
Sbjct: 138 IAI 137

[Close]

BLAST of CmoCh06G007550 vs. Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-27
Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 62  EPVDREKTCPLLLRVF-TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 121
           +P+DREKTCPLLLRVF T  G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 122 APEARRRNAKLSFAFVYPD-KRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLD 181
            PEAR++    +FA V+ D KR  + +K +G+T S   G   D S  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

Query: 182 VAI 183
           +AI
Sbjct: 138 IAI 137

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BLAST of CmoCh06G007550 vs. TrEMBL
Match: A0A0A0L751_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038150 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.5e-80
Identity = 154/166 (92.77%), Postives = 156/166 (93.98%), Query Frame = 1


Query: 18  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 77
           MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 78  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 137
           TKVG HHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 138 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmoCh06G007550 vs. TrEMBL
Match: W9S970_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023149 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-65
Identity = 133/174 (76.44%), Postives = 144/174 (82.76%), Query Frame = 1


Query: 18  MDKRSRDEKMSGAATAPPQGRP-------SARPLPPPSQAKAPPPP-PRARFEPVDREKT 77
           M+KRSRD+K++G    PP  RP         RP PPP  ++APPP  PR RFEPVDREKT
Sbjct: 1   MEKRSRDDKIAGGVRPPPHSRPLPVTGSAGGRPGPPPPHSRAPPPVIPRPRFEPVDREKT 60

Query: 78  CPLLLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA 137
           CPLLLRVFTK+G HH +EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAP ARRRNA
Sbjct: 61  CPLLLRVFTKLGGHHNEEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRNA 120

Query: 138 KLSFAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           KLSFAFVYPDKRGRFVLK VG THS GNGRR+D  KALG LDFQIGDYLDVAI+
Sbjct: 121 KLSFAFVYPDKRGRFVLKQVGMTHSCGNGRRIDDDKALGGLDFQIGDYLDVAII 174

[Close]

BLAST of CmoCh06G007550 vs. TrEMBL
Match: M5WC77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012467mg PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63
Identity = 124/171 (72.51%), Postives = 143/171 (83.63%), Query Frame = 1


Query: 18  MDKRSRDEKMSGAATAPPQGR-----PSARPLPPPSQAKAPPPPPRARFEPVDREKTCPL 77
           M++R+RD+KM G     PQ +     P+ RPLPPP  ++ PPPPP  R EPVDREKTCPL
Sbjct: 1   MERRNRDDKMGGPG---PQNQAQTRGPTGRPLPPPPHSRGPPPPPPPRLEPVDREKTCPL 60

Query: 78  LLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS 137
           LLRVFTK+GSHH +EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKE+APEARRRNAKLS
Sbjct: 61  LLRVFTKIGSHHNNEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEIAPEARRRNAKLS 120

Query: 138 FAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           FAFVYPD+RG FV+K VG THSYGNGR  D +KAL + +FQIGDYLDVA++
Sbjct: 121 FAFVYPDRRGHFVVKTVGMTHSYGNGRNPDENKALNDFNFQIGDYLDVAVL 168

[Close]

BLAST of CmoCh06G007550 vs. TrEMBL
Match: A0A061DVR5_THECC (SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-62
Identity = 125/157 (79.62%), Postives = 136/157 (86.62%), Query Frame = 1


Query: 27  MSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTD 86
           M+GAA A  Q R S RPLPPP  A+ PPPPPR RFEPVDREKTCPLLLRVFTK+G HH+ 
Sbjct: 1   MAGAAEA--QKRQSGRPLPPP--ARGPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSK 60

Query: 87  EDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVL 146
           EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAP +RRR+A+LSFAFVYPDK GRFV+
Sbjct: 61  EDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPASRRRDARLSFAFVYPDKNGRFVV 120

Query: 147 KPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           + VG T SYGNGRRLD  K LGEL F+IGDYLDVAIM
Sbjct: 121 REVGKTFSYGNGRRLDDGKTLGELSFEIGDYLDVAIM 153

[Close]

BLAST of CmoCh06G007550 vs. TrEMBL
Match: A0A0B0NV41_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21512 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-61
Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 25  EKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHH 84
           E M+GAA   PQ R S RP PP   A+ PPPPPR RFEPVDREKTCPLLLRVFTK+G HH
Sbjct: 28  ENMAGAAE--PQKRQSGRPFPP--SARGPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHH 87

Query: 85  TDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRF 144
           + EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAP ARRR+A+LSFAFVYPDK GRF
Sbjct: 88  SKEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRF 147

Query: 145 VLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           V++ VG T SYGN RRLD SK LGEL F+IGDYLDVAIM
Sbjct: 148 VVREVGKTFSYGNVRRLDDSKTLGELSFEIGDYLDVAIM 182

[Close]

BLAST of CmoCh06G007550 vs. TAIR10
Match: AT2G45640.1 (AT2G45640.1 SIN3 associated polypeptide P18)

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-49
Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 30  AATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVFTKVGSHHTDEDF 89
           A  A  QG    RPLPPP +      PPR + EPVDREKTCPLLLRVFTK G HHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPRG-VNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 90  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKPV 149
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + ++ V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 150 GTTHSYGNGRRLDGSKALGELDFQIGDYLDVAI 183
           G T +Y N ++ D SK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of CmoCh06G007550 vs. NCBI nr
Match: gi|449460459|ref|XP_004147963.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 5.0e-80
Identity = 154/166 (92.77%), Postives = 156/166 (93.98%), Query Frame = 1


Query: 18  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 77
           MDKRSRDEK SGAATAP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 78  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 137
           TKVG HHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 138 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmoCh06G007550 vs. NCBI nr
Match: gi|659096143|ref|XP_008448944.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 1.4e-79
Identity = 154/166 (92.77%), Postives = 155/166 (93.37%), Query Frame = 1


Query: 18  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 77
           MDKRSRDEK SGAA AP QGRPS RPLPPPSQ KAPPP PR RFEPVDREKTCPLLLRVF
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 78  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 137
           TKVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 138 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of CmoCh06G007550 vs. NCBI nr
Match: gi|703143623|ref|XP_010108064.1| (hypothetical protein L484_023149 [Morus notabilis])

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 133/174 (76.44%), Postives = 144/174 (82.76%), Query Frame = 1


Query: 18  MDKRSRDEKMSGAATAPPQGRP-------SARPLPPPSQAKAPPPP-PRARFEPVDREKT 77
           M+KRSRD+K++G    PP  RP         RP PPP  ++APPP  PR RFEPVDREKT
Sbjct: 1   MEKRSRDDKIAGGVRPPPHSRPLPVTGSAGGRPGPPPPHSRAPPPVIPRPRFEPVDREKT 60

Query: 78  CPLLLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNA 137
           CPLLLRVFTK+G HH +EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAP ARRRNA
Sbjct: 61  CPLLLRVFTKLGGHHNEEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRNA 120

Query: 138 KLSFAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           KLSFAFVYPDKRGRFVLK VG THS GNGRR+D  KALG LDFQIGDYLDVAI+
Sbjct: 121 KLSFAFVYPDKRGRFVLKQVGMTHSCGNGRRIDDDKALGGLDFQIGDYLDVAII 174

[Close]

BLAST of CmoCh06G007550 vs. NCBI nr
Match: gi|595849354|ref|XP_007209707.1| (hypothetical protein PRUPE_ppa012467mg [Prunus persica])

HSP 1 Score: 251.1 bits (640), Expect = 1.4e-63
Identity = 124/171 (72.51%), Postives = 143/171 (83.63%), Query Frame = 1


Query: 18  MDKRSRDEKMSGAATAPPQGR-----PSARPLPPPSQAKAPPPPPRARFEPVDREKTCPL 77
           M++R+RD+KM G     PQ +     P+ RPLPPP  ++ PPPPP  R EPVDREKTCPL
Sbjct: 1   MERRNRDDKMGGPG---PQNQAQTRGPTGRPLPPPPHSRGPPPPPPPRLEPVDREKTCPL 60

Query: 78  LLRVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS 137
           LLRVFTK+GSHH +EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKE+APEARRRNAKLS
Sbjct: 61  LLRVFTKIGSHHNNEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEIAPEARRRNAKLS 120

Query: 138 FAFVYPDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 184
           FAFVYPD+RG FV+K VG THSYGNGR  D +KAL + +FQIGDYLDVA++
Sbjct: 121 FAFVYPDRRGHFVVKTVGMTHSYGNGRNPDENKALNDFNFQIGDYLDVAVL 168

[Close]

BLAST of CmoCh06G007550 vs. NCBI nr
Match: gi|470125465|ref|XP_004298722.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-63
Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 1


Query: 18  MDKRSRDEKMSGAATAPPQGRPSARPLPPPS---QAKAPPPPPRARFEPVDREKTCPLLL 77
           M++RSRDE+M+G A A P+G P  RPLPPP    Q++ PPPPP  RFEPVDREKTCPLLL
Sbjct: 1   MERRSRDERMAGGAGAGPRG-PPGRPLPPPPSFPQSRGPPPPPPRRFEPVDREKTCPLLL 60

Query: 78  RVFTKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA 137
           RVFTK G HHT EDFA+RGKEPKDEVQIYTWKDATLRELTDLVKE+AP ARRRNAKLSFA
Sbjct: 61  RVFTKNGGHHTQEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEIAPAARRRNAKLSFA 120

Query: 138 FVYPDKRGRFVLKPVGTTHSYGN-GRRLDGSKALGELDFQIGDYLDVAIM 184
           FVYPDKRG +V K  G TH++GN GRRLD SK+L EL FQIGDYLDVA++
Sbjct: 121 FVYPDKRGCYVFKQAGMTHAHGNIGRRLDDSKSLNELKFQIGDYLDVAVL 169

The following BLAST results are available for this feature:

BLAST of CmoCh06G007550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAP18_ARATH	8.5e-48	66.67	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 P...	[more]
SAP18_HUMAN	1.7e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1	[more]
SAP18_BOVIN	1.7e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1	[more]
SAP18_PONAB	1.7e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1	[more]
SAP18_MOUSE	2.2e-27	55.28	Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1	[more]

BLAST of CmoCh06G007550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L751_CUCSA	3.5e-80	92.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038150 PE=4 SV=1	[more]
W9S970_9ROSA	1.1e-65	76.44	Uncharacterized protein OS=Morus notabilis GN=L484_023149 PE=4 SV=1	[more]
M5WC77_PRUPE	1.0e-63	72.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012467mg PE=4 SV=1	[more]
A0A061DVR5_THECC	2.5e-62	79.62	SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1	[more]
A0A0B0NV41_GOSAR	1.2e-61	78.62	Uncharacterized protein OS=Gossypium arboreum GN=F383_21512 PE=4 SV=1	[more]

BLAST of CmoCh06G007550 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45640.1	4.8e-49	66.67	SIN3 associated polypeptide P18	[more]

BLAST of CmoCh06G007550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460459\|ref\|XP_004147963.1\|	5.0e-80	92.77	PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus]	[more]
gi\|659096143\|ref\|XP_008448944.1\|	1.4e-79	92.77	PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]	[more]
gi\|703143623\|ref\|XP_010108064.1\|	1.5e-65	76.44	hypothetical protein L484_023149 [Morus notabilis]	[more]
gi\|595849354\|ref\|XP_007209707.1\|	1.4e-63	72.51	hypothetical protein PRUPE_ppa012467mg [Prunus persica]	[more]
gi\|470125465\|ref\|XP_004298722.1\|	1.9e-63	75.88	PREDICTED: histone deacetylase complex subunit SAP18-like [Fragaria vesca subsp....	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010516	SAP18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G007550.1	CmoCh06G007550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 11..183 score: 2.5
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 63..182 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G007550	Cucsa.320220	Cucumber (Gy14) v1	cgycmoB0893
CmoCh06G007550	CmaCh06G007310	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G007550	Cla001154	Watermelon (97103) v1	cmowmB778
CmoCh06G007550	Csa3G038150	Cucumber (Chinese Long) v2	cmocuB815
CmoCh06G007550	MELO3C014010	Melon (DHL92) v3.5.1	cmomeB756
CmoCh06G007550	ClCG00G000160	Watermelon (Charleston Gray)	cmowcgB718
CmoCh06G007550	ClCG10G003410	Watermelon (Charleston Gray)	cmowcgB730
CmoCh06G007550	CSPI03G03390	Wild cucumber (PI 183967)	cmocpiB823
CmoCh06G007550	Lsi07G013700	Bottle gourd (USVL1VR-Ls)	cmolsiB766
CmoCh06G007550	Cp4.1LG08g07910	Cucurbita pepo (Zucchini)	cmocpeB797
CmoCh06G007550	MELO3C014010.2	Melon (DHL92) v3.6.1	cmomedB861
CmoCh06G007550	CsaV3_3G003440	Cucumber (Chinese Long) v3	cmocucB0961
CmoCh06G007550	Cla97C10G187930	Watermelon (97103) v2	cmowmbB819
CmoCh06G007550	Bhi11G000205	Wax gourd	cmowgoB0986
CmoCh06G007550	CsGy3G003350	Cucumber (Gy14) v2	cgybcmoB409
CmoCh06G007550	Carg21631	Silver-seed gourd	carcmoB1172

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G007550	Wild cucumber (PI 183967)	cmocpiB836
CmoCh06G007550	Cucumber (Chinese Long) v2	cmocuB826
CmoCh06G007550	Melon (DHL92) v3.5.1	cmomeB736
CmoCh06G007550	Watermelon (Charleston Gray)	cmowcgB728
CmoCh06G007550	Watermelon (Charleston Gray)	cmowcgB717
CmoCh06G007550	Watermelon (Charleston Gray)	cmowcgB737
CmoCh06G007550	Watermelon (97103) v1	cmowmB784
CmoCh06G007550	Watermelon (97103) v1	cmowmB795
CmoCh06G007550	Cucurbita pepo (Zucchini)	cmocpeB767
CmoCh06G007550	Cucurbita pepo (Zucchini)	cmocpeB768
CmoCh06G007550	Bottle gourd (USVL1VR-Ls)	cmolsiB765
CmoCh06G007550	Cucumber (Gy14) v2	cgybcmoB675
CmoCh06G007550	Melon (DHL92) v3.6.1	cmomedB834
CmoCh06G007550	Silver-seed gourd	carcmoB1256
CmoCh06G007550	Cucumber (Chinese Long) v3	cmocucB0974
CmoCh06G007550	Watermelon (97103) v2	cmowmbB808
CmoCh06G007550	Watermelon (97103) v2	cmowmbB817
CmoCh06G007550	Wax gourd	cmowgoB0996
CmoCh06G007550	Cucurbita moschata (Rifu)	cmocmoB271
CmoCh06G007550	Cucurbita moschata (Rifu)	cmocmoB291
CmoCh06G007550	Cucumber (Gy14) v1	cgycmoB0834
CmoCh06G007550	Cucurbita maxima (Rimu)	cmacmoB316
CmoCh06G007550	Cucurbita maxima (Rimu)	cmacmoB341