CmaCh05G010310 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G010310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Low temperature and salt responsive protein
Location	Cma_Chr05 : 8269654 .. 8270561 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAACCACTCTCTTCCACAACTCTCTCTGATCTCTTTCGAAGCTCGAAAATGGCGAACGGATGTGAGATCTGCTGCGAGATTCTCATCGCCATCCTCATTCCTCCTCTAGGAGTTTGCCTAAAACACGGCTGTTGCACGGTAATCTTACTTCTTCTTCCATCTCTCTGACTCTCTGTAATTTCGCCCAATCTGAACTCCTGGTGACCGAAAACAGCCGACGAAACTGCTCTCTGATCTAAATCAGATGACGTCGATCTGGATTAGGTTTTGGTTTTCGGTCTAATTTTTTGTGGAAATGGTATAATTGCAGGTGGAATTTTGTCTGTGTTTGATTTTGACTCTTCTCGGTTACATTCCGGGGATCATCTACGCACTCTACGCCATCGTCTACGTCGATCGCGACCAGTTCTTCGATGAGTACAGGCGTCCGCTCTATTCTCAGGCGTCGGCGGTATAGAAACCGGTTTGAATCTCTTCAACTCTGTGTTTAGCCTTTTTCGAATAAGGTTGTTAAGCTTTTGGTGCTCATGTAGCTTTTGGATTGGATTTCATCTACATAGATTTGTTCAGCTTTCTGTTTCTTGATTCAGTTGGATTTAGATTTTGTTGAGACACTGTATGGTGTTGGATGATTAAAGTCCCACATCGGTTAATTTAGGGAATGGTCATGGGTTTATAATCTAAGAATACACTCTCCATTGGTATGAGGCCTTTTGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGCCTAACATATGGATGTGTGGTCATGAACTTAGACCTAAGAAGTTTGGAATAATTTGGATGTCGGCAATGGCGTTTTGAAGTGCCTTTGCGTAGAAAGAAGTAGTCGAGGCGTCC

mRNA sequence

AATCAACCACTCTCTTCCACAACTCTCTCTGATCTCTTTCGAAGCTCGAAAATGGCGAACGGATGTGAGATCTGCTGCGAGATTCTCATCGCCATCCTCATTCCTCCTCTAGGAGTTTGCCTAAAACACGGCTGTTGCACGGTGGAATTTTGTCTGTGTTTGATTTTGACTCTTCTCGGTTACATTCCGGGGATCATCTACGCACTCTACGCCATCGTCTACGTCGATCGCGACCAGTTCTTCGATGAGTACAGGCGTCCGCTCTATTCTCAGGCGTCGGCGGTATAGAAACCGGTTTGAATCTCTTCAACTCTGTGTTTAGCCTTTTTCGAATAAGGTTGTTAAGCTTTTGGTGCTCATGTAGCTTTTGGATTGGATTTCATCTACATAGATTTGTTCAGCTTTCTGTTTCTTGATTCAGTTGGATTTAGATTTTGTTGAGACACTGTATGGTGTTGGATGATTAAAGTCCCACATCGGTTAATTTAGGGAATGGTCATGGGTTTATAATCTAAGAATACACTCTCCATTGGTATGAGGCCTTTTGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGCCTAACATATGGATGTGTGGTCATGAACTTAGACCTAAGAAGTTTGGAATAATTTGGATGTCGGCAATGGCGTTTTGAAGTGCCTTTGCGTAGAAAGAAGTAGTCGAGGCGTCC

Coding sequence (CDS)

ATGGCGAACGGATGTGAGATCTGCTGCGAGATTCTCATCGCCATCCTCATTCCTCCTCTAGGAGTTTGCCTAAAACACGGCTGTTGCACGGTGGAATTTTGTCTGTGTTTGATTTTGACTCTTCTCGGTTACATTCCGGGGATCATCTACGCACTCTACGCCATCGTCTACGTCGATCGCGACCAGTTCTTCGATGAGTACAGGCGTCCGCTCTATTCTCAGGCGTCGGCGGTATAG

Protein sequence

MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV

Homology

[Close]

BLAST of CmaCh05G010310 vs. Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-27
Identity = 53/72 (73.61%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MA+ CE+CCEI IAIL+PP+GVCL+HGCCTVEF +CLILT LGY+PGIIYA+YAI ++ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DQFFDEYRRPLY 73
          D++FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of CmaCh05G010310 vs. Swiss-Prot
Match: RC24_ARATH (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IV+  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DQFFDEYRRPLYS 74
          +++FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of CmaCh05G010310 vs. Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-19
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MA+  E+ CEILIAIL+PPLGVCLK GCCTVEF +CL+LT+LGYIPGIIYALY IV+ +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of CmaCh05G010310 vs. Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-16
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 1  MANG-CEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVD 60
          MA+G C    EIL+AI++PPLGV L+ GCC++EFC+CL+LT+LGY+PGIIYA+Y +V +D
Sbjct: 1  MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALD 60

Query: 61 RDQFFDEY 68
           DQ+  EY
Sbjct: 61 SDQYQREY 68

[Close]

BLAST of CmaCh05G010310 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 5.1e-10
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1


Query: 4  GCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAI 56
          G   C +ILIAI++PPLGV LK GC   EF +CL+LT LGYIPGIIYA+YAI
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGH-EFWICLLLTFLGYIPGIIYAIYAI 53

[Close]

BLAST of CmaCh05G010310 vs. TrEMBL
Match: A0A0A0LGN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036040 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.7e-33
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          M NGCEICCEILIAILIPPLGVCLK GCCTVEFCLCLILTLLGY+PGIIYA+YAI +VDR
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDR 60

Query: 61 DQFFDEYRRPLYSQASA 78
          DQFFDEYRRPLYS  SA
Sbjct: 61 DQFFDEYRRPLYSSVSA 77

[Close]

BLAST of CmaCh05G010310 vs. TrEMBL
Match: D7MDN1_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_328884 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MANGCEICCEI+IAILIPPLGVCL+HGCCT EF +CLILTLLGY+PGIIYALYAIVYVDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLY 73
          DQFFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmaCh05G010310 vs. TrEMBL
Match: F4JKH9_ARATH (Low temperature and salt responsive protein OS=Arabidopsis thaliana GN=At4g28088 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MANGCEICCEI+IAILIPPLGVCL+HGCCT EF +CLILTLLGY+PGIIYALYAIVYVDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLY 73
          DQFFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmaCh05G010310 vs. TrEMBL
Match: R0F919_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10006610mg PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MANGCEICCEI+IAILIPPLGVCL+HGCCT EF +CLILTLLGY+PGIIYALYAIVYVDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLY 73
          DQFFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmaCh05G010310 vs. TrEMBL
Match: A0A0D3A770_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.8e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MANGCEICCEI+IAIL+PPLGVCL+HGCCT EF +CLILTLLGYIPGIIYALYAIVYVDR
Sbjct: 1  MANGCEICCEIMIAILLPPLGVCLRHGCCTTEFMICLILTLLGYIPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLY 73
          DQFFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmaCh05G010310 vs. TAIR10
Match: AT4G28088.1 (AT4G28088.1 Low temperature and salt responsive protein family)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-34
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MANGCEICCEI+IAILIPPLGVCL+HGCCT EF +CLILTLLGY+PGIIYALYAIVYVDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLY 73
          DQFFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmaCh05G010310 vs. TAIR10
Match: AT2G24040.1 (AT2G24040.1 Low temperature and salt responsive protein family)

HSP 1 Score: 123.2 bits (308), Expect = 6.9e-29
Identity = 53/72 (73.61%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MA+ CE+CCEI IAIL+PP+GVCL+HGCCTVEF +CLILT LGY+PGIIYA+YAI ++ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DQFFDEYRRPLY 73
          D++FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of CmaCh05G010310 vs. TAIR10
Match: AT4G30660.1 (AT4G30660.1 Low temperature and salt responsive protein family)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-26
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IV+  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DQFFDEYRRPLYS 74
          +++FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of CmaCh05G010310 vs. TAIR10
Match: AT4G30650.1 (AT4G30650.1 Low temperature and salt responsive protein family)

HSP 1 Score: 96.3 bits (238), Expect = 9.0e-21
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MA+  E+ CEILIAIL+PPLGVCLK GCCTVEF +CL+LT+LGYIPGIIYALY IV+ +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of CmaCh05G010310 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-11
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 4  GCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIV 57
          G E   EI++AIL+PP+GV L++GC  VEF +CL+LT+LGYIPGIIYA+Y +V
Sbjct: 2  GSETFLEIILAILLPPVGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 53

[Close]

BLAST of CmaCh05G010310 vs. NCBI nr
Match: gi|659069979|ref|XP_008452728.1| (PREDICTED: UPF0057 membrane protein At4g30660 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-33
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          M NGCEICCEILIAILIPPLGVCLK GCCTVEFCLCLILTLLGY+PGIIYA+YAI +VDR
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDR 60

Query: 61 DQFFDEYRRPLYSQASA 78
          DQFFDEYRRPLYS ASA
Sbjct: 61 DQFFDEYRRPLYSSASA 77

[Close]

BLAST of CmaCh05G010310 vs. NCBI nr
Match: gi|778667255|ref|XP_011648896.1| (PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.6e-33
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          M NGCEICCEILIAILIPPLGVCLK GCCTVEFCLCLILTLLGY+PGIIYA+YAI +VDR
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDR 60

Query: 61 DQFFDEYRRPLYSQASA 78
          DQFFDEYRRPLYS  SA
Sbjct: 61 DQFFDEYRRPLYSSVSA 77

[Close]

BLAST of CmaCh05G010310 vs. NCBI nr
Match: gi|42573065|ref|NP_974629.1| (Low temperature and salt responsive protein [Arabidopsis thaliana])

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MANGCEICCEI+IAILIPPLGVCL+HGCCT EF +CLILTLLGY+PGIIYALYAIVYVDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLY 73
          DQFFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmaCh05G010310 vs. NCBI nr
Match: gi|685261206|ref|XP_009144188.1| (PREDICTED: UPF0057 membrane protein At2g24040 [Brassica rapa])

HSP 1 Score: 141.4 bits (355), Expect = 6.9e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          MANGCEICCEI+IAIL+PPLGVCL+HGCCT EF +CLILTLLGYIPGIIYALYAIVYVDR
Sbjct: 1  MANGCEICCEIMIAILLPPLGVCLRHGCCTTEFMICLILTLLGYIPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLY 73
          DQFFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmaCh05G010310 vs. NCBI nr
Match: gi|658003580|ref|XP_008394308.1| (PREDICTED: UPF0057 membrane protein At4g30660-like [Malus domestica])

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-30
Identity = 60/75 (80.00%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60
          M +GCEICCEILIAIL+PPLGVCL+HGCCTVEFC+CL+LTLLGY+PGIIYALYAIV+++R
Sbjct: 1  MPSGCEICCEILIAILLPPLGVCLRHGCCTVEFCICLLLTLLGYLPGIIYALYAIVFINR 60

Query: 61 DQFFDEYRRPLYSQA 76
          D++FDEYRRPLY+ +
Sbjct: 61 DEYFDEYRRPLYASS 75

The following BLAST results are available for this feature:

BLAST of CmaCh05G010310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RC22_ARATH	1.2e-27	73.61	UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=3 SV=...	[more]
RC24_ARATH	1.9e-25	68.49	UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=...	[more]
RC23_ARATH	1.6e-19	73.77	UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=...	[more]
OSR8_ORYSJ	2.2e-16	60.29	Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1	[more]
LTI6B_ORYSI	5.1e-10	67.31	Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2	[more]

BLAST of CmaCh05G010310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGN1_CUCSA	6.7e-33	89.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036040 PE=4 SV=1	[more]
D7MDN1_ARALL	3.7e-31	90.28	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
F4JKH9_ARATH	3.7e-31	90.28	Low temperature and salt responsive protein OS=Arabidopsis thaliana GN=At4g28088...	[more]
R0F919_9BRAS	3.7e-31	90.28	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10006610mg PE=4 SV=1	[more]
A0A0D3A770_BRAOL	4.8e-31	90.28	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of CmaCh05G010310 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28088.1	1.9e-34	90.28	Low temperature and salt responsive protein family	[more]
AT2G24040.1	6.9e-29	73.61	Low temperature and salt responsive protein family	[more]
AT4G30660.1	1.1e-26	68.49	Low temperature and salt responsive protein family	[more]
AT4G30650.1	9.0e-21	73.77	Low temperature and salt responsive protein family	[more]
AT2G38905.1	1.7e-11	62.26	Low temperature and salt responsive protein family	[more]

BLAST of CmaCh05G010310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069979\|ref\|XP_008452728.1\|	3.3e-33	90.91	PREDICTED: UPF0057 membrane protein At4g30660 [Cucumis melo]	[more]
gi\|778667255\|ref\|XP_011648896.1\|	9.6e-33	89.61	PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus]	[more]
gi\|42573065\|ref\|NP_974629.1\|	5.3e-31	90.28	Low temperature and salt responsive protein [Arabidopsis thaliana]	[more]
gi\|685261206\|ref\|XP_009144188.1\|	6.9e-31	90.28	PREDICTED: UPF0057 membrane protein At2g24040 [Brassica rapa]	[more]
gi\|658003580\|ref\|XP_008394308.1\|	4.5e-30	80.00	PREDICTED: UPF0057 membrane protein At4g30660-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000612	PMP3

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G010310.1	CmaCh05G010310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..72 score: 1.6
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 8..56 score: 1.4
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 12..27 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G010310	Cucsa.090120	Cucumber (Gy14) v1	cgycmaB0184
CmaCh05G010310	Cla020019	Watermelon (97103) v1	cmawmB764
CmaCh05G010310	Csa2G036040	Cucumber (Chinese Long) v2	cmacuB791
CmaCh05G010310	MELO3C004127	Melon (DHL92) v3.5.1	cmameB735
CmaCh05G010310	ClCG02G014410	Watermelon (Charleston Gray)	cmawcgB695
CmaCh05G010310	CSPI02G05240	Wild cucumber (PI 183967)	cmacpiB800
CmaCh05G010310	CmoCh05G010430	Cucurbita moschata (Rifu)	cmacmoB787
CmaCh05G010310	CmoCh12G008570	Cucurbita moschata (Rifu)	cmacmoB768
CmaCh05G010310	Lsi11G006900	Bottle gourd (USVL1VR-Ls)	cmalsiB715
CmaCh05G010310	Cp4.1LG11g08400	Cucurbita pepo (Zucchini)	cmacpeB767
CmaCh05G010310	MELO3C004127.2	Melon (DHL92) v3.6.1	cmamedB829
CmaCh05G010310	CsaV3_2G007590	Cucumber (Chinese Long) v3	cmacucB0934
CmaCh05G010310	Cla97C02G040170	Watermelon (97103) v2	cmawmbB810
CmaCh05G010310	Bhi06G001223	Wax gourd	cmawgoB0918
CmaCh05G010310	CsGy2G005380	Cucumber (Gy14) v2	cgybcmaB257
CmaCh05G010310	Carg16431	Silver-seed gourd	carcmaB1255
CmaCh05G010310	Carg11967	Silver-seed gourd	carcmaB0790

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh05G010310	CmaCh12G008530	Cucurbita maxima (Rimu)	cmacmaB195

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G010310	Cucurbita pepo (Zucchini)	cmacpeB795