CmaCh05G009440 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G009440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transcription factor Homeobox
Location	Cma_Chr05 : 7627043 .. 7628186 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCGAATTTGTATAATTTATGGGCTAAATTAAAAAAAAAAAAAATTTATCCAATGTGTGTGTTCTCGAGTGGTGGAAAAAAGGATGCCTTGACCCTGCAGGAGCCTTATAATGCCACAAGCTCTCACCTCATGAAAGAACAATCTCTCTCTCTCCTCTGTTTTTTTCTCTCTCTTCAATCTTCTCATACTTCACGTAACTCTCTGTTTCTCTCTGTTTCTCTCTGCCACAGCTATGGCGGACGGAGCAGTTTACGCGCCACCTTCCTCCGACGTGCTTGATTCCCTCATAATTCCCGGTAAGAATCTTCAATAATTAATGAGTTTTCCGGCAAATTCTGAGCTGACCCATTAATGTTTTTCAGGCGAGTTCATCGGAGAAACCAACGAAGACGAATTACTCGACGGACTATGGCGGAAAGCTTCAAAAAAACGGCGGCTTTCGGTGGATCAAGTTCAATTTCTTGAGAAAAGCTTCGAAGTGGAAAACAAACTAGAACCAGAGAGAAAAACCCAATTAGCTAAAGAATTGGGTCTTCAGCCAAGACAAGTAGCGATCTGGTTCCAAAACAGACGAGCTCGTTGCAAAACAAAGCAGCTAGAAAAGGATTACTTGTCACTCAAAACCAGCTATGATAATCTCAAATCCAGCTACGAAGATCTTGTTCGTGAAAAGGAAGAACTTGAAACAGAGATTCGGAATTTGGAAGAGAGATTAGCGAATGGAGAGAAAGGGAATCGAATTGATTGTTGTTGGGAGAATCAGAACTCATCAATGGCGGATTCTTCACATGGGTTTGAAACAGAGCTGTCGGATTGTTTCTCGCAGGTTGAAGAAGAGAATTTAAGTGGGGATTTGTTGCCGATTTGTTTCCCCAAATTGGAAAGCTGTTATTATGATGATGATTTAACAGATGGTTGTTGTAATTTAGTTGGATTCCAGATCGAAGATCAAGCCTTGGGTTTCTGGCCTTGTTGAGACAATTTTATCTGGAATTACTCTGTTTTTCAATTATGGTTAAATATAGGTATTTTAAAGCTAATAAACTTAAATCATGGGGGGGTTTTGTGAATATTTTTGCCTAAATATATTATTTTCTTTTTTTTTAATTATAAATGTTACATTAATAATTAAAATTCCACC

mRNA sequence

AATTCGAATTTGTATAATTTATGGGCTAAATTAAAAAAAAAAAAAATTTATCCAATGTGTGTGTTCTCGAGTGGTGGAAAAAAGGATGCCTTGACCCTGCAGGAGCCTTATAATGCCACAAGCTCTCACCTCATGAAAGAACAATCTCTCTCTCTCCTCTGTTTTTTTCTCTCTCTTCAATCTTCTCATACTTCACGTAACTCTCTGTTTCTCTCTGTTTCTCTCTGCCACAGCTATGGCGGACGGAGCAGTTTACGCGCCACCTTCCTCCGACGTGCTTGATTCCCTCATAATTCCCGGCGAGTTCATCGGAGAAACCAACGAAGACGAATTACTCGACGGACTATGGCGGAAAGCTTCAAAAAAACGGCGGCTTTCGGTGGATCAAGTTCAATTTCTTGAGAAAAGCTTCGAAGTGGAAAACAAACTAGAACCAGAGAGAAAAACCCAATTAGCTAAAGAATTGGGTCTTCAGCCAAGACAAGTAGCGATCTGGTTCCAAAACAGACGAGCTCGTTGCAAAACAAAGCAGCTAGAAAAGGATTACTTGTCACTCAAAACCAGCTATGATAATCTCAAATCCAGCTACGAAGATCTTGTTCGTGAAAAGGAAGAACTTGAAACAGAGATTCGGAATTTGGAAGAGAGATTAGCGAATGGAGAGAAAGGGAATCGAATTGATTGTTGTTGGGAGAATCAGAACTCATCAATGGCGGATTCTTCACATGGGTTTGAAACAGAGCTGTCGGATTGTTTCTCGCAGGTTGAAGAAGAGAATTTAAGTGGGGATTTGTTGCCGATTTGTTTCCCCAAATTGGAAAGCTGTTATTATGATGATGATTTAACAGATGGTTGTTGTAATTTAGTTGGATTCCAGATCGAAGATCAAGCCTTGGGTTTCTGGCCTTGTTGAGACAATTTTATCTGGAATTACTCTGTTTTTCAATTATGGTTAAATATAGGTATTTTAAAGCTAATAAACTTAAATCATGGGGGGGTTTTGTGAATATTTTTGCCTAAATATATTATTTTCTTTTTTTTTAATTATAAATGTTACATTAATAATTAAAATTCCACC

Coding sequence (CDS)

ATGGCGGACGGAGCAGTTTACGCGCCACCTTCCTCCGACGTGCTTGATTCCCTCATAATTCCCGGCGAGTTCATCGGAGAAACCAACGAAGACGAATTACTCGACGGACTATGGCGGAAAGCTTCAAAAAAACGGCGGCTTTCGGTGGATCAAGTTCAATTTCTTGAGAAAAGCTTCGAAGTGGAAAACAAACTAGAACCAGAGAGAAAAACCCAATTAGCTAAAGAATTGGGTCTTCAGCCAAGACAAGTAGCGATCTGGTTCCAAAACAGACGAGCTCGTTGCAAAACAAAGCAGCTAGAAAAGGATTACTTGTCACTCAAAACCAGCTATGATAATCTCAAATCCAGCTACGAAGATCTTGTTCGTGAAAAGGAAGAACTTGAAACAGAGATTCGGAATTTGGAAGAGAGATTAGCGAATGGAGAGAAAGGGAATCGAATTGATTGTTGTTGGGAGAATCAGAACTCATCAATGGCGGATTCTTCACATGGGTTTGAAACAGAGCTGTCGGATTGTTTCTCGCAGGTTGAAGAAGAGAATTTAAGTGGGGATTTGTTGCCGATTTGTTTCCCCAAATTGGAAAGCTGTTATTATGATGATGATTTAACAGATGGTTGTTGTAATTTAGTTGGATTCCAGATCGAAGATCAAGCCTTGGGTTTCTGGCCTTGTTGA

Protein sequence

MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGEKGNRIDCCWENQNSSMADSSHGFETELSDCFSQVEEENLSGDLLPICFPKLESCYYDDDLTDGCCNLVGFQIEDQALGFWPC

Homology

[Close]

BLAST of CmaCh05G009440 vs. Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.7e-29
Identity = 72/142 (50.70%), Postives = 100/142 (70.42%), Query Frame = 1


Query: 43  KKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEK 102
           KKRRLSV+QV+ LE+SFEVENKLEPERK +LA++LGLQPRQVA+WFQNRRAR KTKQLE+
Sbjct: 51  KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 110

Query: 103 DYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGEKGNRIDCCWENQNSSMADS 162
           DY +L+ SYD+L+  ++ L R+K+ L  EI+ L+ +L + E         E   +S    
Sbjct: 111 DYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVKEEPAASDGPP 170

Query: 163 SHGFETELSDCFSQVEEENLSG 185
           + GF +  SD  + + + + +G
Sbjct: 171 AAGFGSSDSDSSAVLNDVDAAG 192

[Close]

BLAST of CmaCh05G009440 vs. Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.7e-29
Identity = 72/142 (50.70%), Postives = 100/142 (70.42%), Query Frame = 1


Query: 43  KKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEK 102
           KKRRLSV+QV+ LE+SFEVENKLEPERK +LA++LGLQPRQVA+WFQNRRAR KTKQLE+
Sbjct: 51  KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 110

Query: 103 DYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGEKGNRIDCCWENQNSSMADS 162
           DY +L+ SYD+L+  ++ L R+K+ L  EI+ L+ +L + E         E   +S    
Sbjct: 111 DYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVKEEPAASDGPP 170

Query: 163 SHGFETELSDCFSQVEEENLSG 185
           + GF +  SD  + + + + +G
Sbjct: 171 AAGFGSSDSDSSAVLNDVDAAG 192

[Close]

BLAST of CmaCh05G009440 vs. Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.7e-29
Identity = 65/97 (67.01%), Postives = 82/97 (84.54%), Query Frame = 1


Query: 43  KKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEK 102
           KKRRL+ +QV  LEKSFE ENKLEPERKTQLAK+LGLQPRQVA+WFQNRRAR KTKQLE+
Sbjct: 68  KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 127

Query: 103 DYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERL 140
           DY  LK++YD L S+Y+ +V + ++L +E+ +L E+L
Sbjct: 128 DYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKL 164

[Close]

BLAST of CmaCh05G009440 vs. Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           + KKRRLS++QV+ LEK+FE+ENKLEPERK +LA+ELGLQPRQVA+WFQNRRAR KTKQL
Sbjct: 60  SEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 119

Query: 101 EKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANG 143
           EKDY  LKT YD+L+ +++ L R+ E L  EI  L+ +L  G
Sbjct: 120 EKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGG 161

[Close]

BLAST of CmaCh05G009440 vs. Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 4.1e-28
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 1


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           + KKRRL VDQV+ LEK+FE+ENKLEPERKT+LA+ELGLQPRQVA+WFQNRRAR KTKQL
Sbjct: 57  SEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQL 116

Query: 101 EKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGEKGN 147
           EKDY  LK  YD+L+ +++ L R+ + L  EI  ++ ++ NGE+ N
Sbjct: 117 EKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKV-NGEEDN 161

[Close]

BLAST of CmaCh05G009440 vs. TrEMBL
Match: A0A0B0P3V0_GOSAR (Homeobox-leucine zipper HAT5-like protein OS=Gossypium arboreum GN=F383_24602 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 114/212 (53.77%), Postives = 137/212 (64.62%), Query Frame = 1


Query: 24  FIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + +  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 77  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 136

Query: 84  VAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGE 143
           VAIWFQNRRAR KTKQLEKDY +L+ S++ LK+ Y +L++EK++L+ E+  L ++L   E
Sbjct: 137 VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKADYGNLLKEKDKLKQEVLQLTDKLVMKE 196

Query: 144 KGNR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K N         C E      +S    SS+ FET+ SD  SQ EE++LS  L       F
Sbjct: 197 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFETDQSDT-SQDEEDSLSKALFQPSSHIF 256

Query: 204 PKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
           PKLE   Y D     C    GF +ED A  FW
Sbjct: 257 PKLEGNDYSDPPASSCS--YGFHVEDHA--FW 283

[Close]

BLAST of CmaCh05G009440 vs. TrEMBL
Match: A0A0D2LVS4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G073600 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 114/212 (53.77%), Postives = 135/212 (63.68%), Query Frame = 1


Query: 24  FIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + +  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 75  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 134

Query: 84  VAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGE 143
           VAIWFQNRRAR KTKQLEKDY +L+ S++ LK  Y +L++EK++L+ E+  L ++L   E
Sbjct: 135 VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEVLQLTDKLVMKE 194

Query: 144 KGNR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K N         C E      +S    SS+ FE + SD  SQ EE+NLS  L       F
Sbjct: 195 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFEPDQSDT-SQDEEDNLSKALFQPSSYIF 254

Query: 204 PKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
           PKLE   Y D     C    GF +ED A  FW
Sbjct: 255 PKLEDNDYSDPPASSCS--YGFHVEDHA--FW 281

[Close]

BLAST of CmaCh05G009440 vs. TrEMBL
Match: A0A0D2QLT7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G073600 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 114/212 (53.77%), Postives = 135/212 (63.68%), Query Frame = 1


Query: 24  FIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + +  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 18  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 77

Query: 84  VAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGE 143
           VAIWFQNRRAR KTKQLEKDY +L+ S++ LK  Y +L++EK++L+ E+  L ++L   E
Sbjct: 78  VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEVLQLTDKLVMKE 137

Query: 144 KGNR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K N         C E      +S    SS+ FE + SD  SQ EE+NLS  L       F
Sbjct: 138 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFEPDQSDT-SQDEEDNLSKALFQPSSYIF 197

Query: 204 PKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
           PKLE   Y D     C    GF +ED A  FW
Sbjct: 198 PKLEDNDYSDPPASSCS--YGFHVEDHA--FW 224

[Close]

BLAST of CmaCh05G009440 vs. TrEMBL
Match: A0A0D2PMW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G073600 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 114/212 (53.77%), Postives = 135/212 (63.68%), Query Frame = 1


Query: 24  FIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + +  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 77  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 136

Query: 84  VAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGE 143
           VAIWFQNRRAR KTKQLEKDY +L+ S++ LK  Y +L++EK++L+ E+  L ++L   E
Sbjct: 137 VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEVLQLTDKLVMKE 196

Query: 144 KGNR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K N         C E      +S    SS+ FE + SD  SQ EE+NLS  L       F
Sbjct: 197 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFEPDQSDT-SQDEEDNLSKALFQPSSYIF 256

Query: 204 PKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
           PKLE   Y D     C    GF +ED A  FW
Sbjct: 257 PKLEDNDYSDPPASSCS--YGFHVEDHA--FW 283

[Close]

BLAST of CmaCh05G009440 vs. TrEMBL
Match: A0A061ED87_THECC (Homeobox-leucine zipper protein HAT5, putative isoform 2 OS=Theobroma cacao GN=TCM_009970 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.2e-39
Identity = 101/201 (50.25%), Postives = 131/201 (65.17%), Query Frame = 1


Query: 5   AVYAPPSSDVLDSLIIPGEFIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENK 64
           +++ P S+  L  ++       E + D+   G +R  +KKRRL+  QVQFLE+SFEVENK
Sbjct: 30  SLWIPSSTSALRDMLFFQPLDKEESGDDDFHGSYRPPAKKRRLTATQVQFLERSFEVENK 89

Query: 65  LEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVRE 124
           LEPERK QLAKELGLQPRQVAIWFQNRRAR K KQLEKDY SLK SYD LK+ Y++L++E
Sbjct: 90  LEPERKVQLAKELGLQPRQVAIWFQNRRARFKNKQLEKDYDSLKASYDELKTDYDNLLKE 149

Query: 125 KEELETEIRNLEERLANGEKGNRIDCCWENQNSSMADSSHGFETELSDCFSQVEEENLSG 184
           KE+LE E+  L+E+L NGE+G       EN  S  A +S   E++  +C      EN+S 
Sbjct: 150 KEDLENEVLALKEKLLNGEEG------MENSGSLDAINSSNAESKKPNC--DTSPENVSR 209

Query: 185 DLLPICFPKLESCYYDDDLTD 206
              P C  + E+C    D+ D
Sbjct: 210 VPSPAC-KQEEACSAKSDVFD 221

[Close]

BLAST of CmaCh05G009440 vs. TAIR10
Match: AT3G01470.1 (AT3G01470.1 homeobox 1)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-30
Identity = 65/97 (67.01%), Postives = 82/97 (84.54%), Query Frame = 1


Query: 43  KKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEK 102
           KKRRL+ +QV  LEKSFE ENKLEPERKTQLAK+LGLQPRQVA+WFQNRRAR KTKQLE+
Sbjct: 68  KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 127

Query: 103 DYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERL 140
           DY  LK++YD L S+Y+ +V + ++L +E+ +L E+L
Sbjct: 128 DYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKL 164

[Close]

BLAST of CmaCh05G009440 vs. TAIR10
Match: AT2G22430.1 (AT2G22430.1 homeobox protein 6)

HSP 1 Score: 127.9 bits (320), Expect = 8.0e-30
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           + KKRRLS++QV+ LEK+FE+ENKLEPERK +LA+ELGLQPRQVA+WFQNRRAR KTKQL
Sbjct: 60  SEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 119

Query: 101 EKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANG 143
           EKDY  LKT YD+L+ +++ L R+ E L  EI  L+ +L  G
Sbjct: 120 EKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGG 161

[Close]

BLAST of CmaCh05G009440 vs. TAIR10
Match: AT4G40060.1 (AT4G40060.1 homeobox protein 16)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-29
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 1


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           + KKRRL VDQV+ LEK+FE+ENKLEPERKT+LA+ELGLQPRQVA+WFQNRRAR KTKQL
Sbjct: 57  SEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQL 116

Query: 101 EKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGEKGN 147
           EKDY  LK  YD+L+ +++ L R+ + L  EI  ++ ++ NGE+ N
Sbjct: 117 EKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKV-NGEEDN 161

[Close]

BLAST of CmaCh05G009440 vs. TAIR10
Match: AT3G01220.1 (AT3G01220.1 homeobox protein 20)

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-28
Identity = 79/193 (40.93%), Postives = 107/193 (55.44%), Query Frame = 1


Query: 43  KKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEK 102
           KK+RL ++QV+ LEKSFE+ NKLEPERK QLAK LG+QPRQ+AIWFQNRRAR KT+QLE+
Sbjct: 87  KKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLER 146

Query: 103 DYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGEKGNRI----DCCWENQNSS 162
           DY SLK  +++LKS    L+   ++L  E+  L+ +  N  +GN +    +  W N  S+
Sbjct: 147 DYDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNKECN--EGNIVKREAEASWSNNGST 206

Query: 163 MADSSHGFETELSDCFSQVEEENLSGDLLPICFPKLESCYYDDD--------LTDGCCNL 222
              S    E       + V   N   DL P     + S  +DDD          +  CN+
Sbjct: 207 ENSSDINLEMPRETITTHV---NTIKDLFP---SSIRSSAHDDDHHQNHEIVQEESLCNM 266

Query: 223 VGFQIEDQALGFW 224
                E    G+W
Sbjct: 267 FNGIDETTPAGYW 271

[Close]

BLAST of CmaCh05G009440 vs. TAIR10
Match: AT5G65310.1 (AT5G65310.1 homeobox protein 5)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27
Identity = 65/106 (61.32%), Postives = 84/106 (79.25%), Query Frame = 1


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           A KKRRL V+QV+ LEK+FE++NKLEPERK +LA+ELGLQPRQVAIWFQNRRAR KTKQL
Sbjct: 70  AEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQL 129

Query: 101 EKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERL-ANGEKG 146
           E+DY  LK+++D LK + + L R+ + L  +I+ L+ +L   G KG
Sbjct: 130 ERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLNVEGVKG 175

[Close]

BLAST of CmaCh05G009440 vs. NCBI nr
Match: gi|297734030|emb|CBI15277.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 3.9e-42
Identity = 112/214 (52.34%), Postives = 141/214 (65.89%), Query Frame = 1


Query: 23  EFIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPR 82
           +F  + N DE LD  + +  KKRRL+ DQVQFLE++FEVENKLEPERK QLAK+LGLQPR
Sbjct: 51  QFDHDENGDEDLDEYFHQPEKKRRLTADQVQFLERNFEVENKLEPERKVQLAKDLGLQPR 110

Query: 83  QVAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERL--A 142
           QVAIWFQNRRAR KTKQLEKD+ +L+ SY++LK+ YE+L++EK+EL+TE+  L ++L   
Sbjct: 111 QVAIWFQNRRARWKTKQLEKDFGALQASYNSLKAEYENLLKEKDELKTEVILLTDKLLVK 170

Query: 143 NGEKGN----RIDCCWEN-----QNSSMADSSHGFETELSDCFSQVEEENLSGDLLP--I 202
             E+GN      D   +         S  DSS+ FE + SD  SQ EE+N S  LLP   
Sbjct: 171 EKERGNLEVSNTDTLSQELPQVVVADSPGDSSYVFEADQSD-VSQDEEDNFSKSLLPPSY 230

Query: 203 CFPKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
            FPKLE   Y D  T+ C    GF +ED A   W
Sbjct: 231 IFPKLEDVDYPDPPTNPCS--FGFPVEDHAFWSW 261

[Close]

BLAST of CmaCh05G009440 vs. NCBI nr
Match: gi|763740746|gb|KJB08245.1| (hypothetical protein B456_001G073600 [Gossypium raimondii])

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 114/212 (53.77%), Postives = 135/212 (63.68%), Query Frame = 1


Query: 24  FIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + +  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 18  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 77

Query: 84  VAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGE 143
           VAIWFQNRRAR KTKQLEKDY +L+ S++ LK  Y +L++EK++L+ E+  L ++L   E
Sbjct: 78  VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEVLQLTDKLVMKE 137

Query: 144 KGNR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K N         C E      +S    SS+ FE + SD  SQ EE+NLS  L       F
Sbjct: 138 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFEPDQSDT-SQDEEDNLSKALFQPSSYIF 197

Query: 204 PKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
           PKLE   Y D     C    GF +ED A  FW
Sbjct: 198 PKLEDNDYSDPPASSCS--YGFHVEDHA--FW 224

[Close]

BLAST of CmaCh05G009440 vs. NCBI nr
Match: gi|728840144|gb|KHG19587.1| (Homeobox-leucine zipper HAT5 -like protein [Gossypium arboreum])

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 114/212 (53.77%), Postives = 137/212 (64.62%), Query Frame = 1


Query: 24  FIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + +  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 77  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 136

Query: 84  VAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGE 143
           VAIWFQNRRAR KTKQLEKDY +L+ S++ LK+ Y +L++EK++L+ E+  L ++L   E
Sbjct: 137 VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKADYGNLLKEKDKLKQEVLQLTDKLVMKE 196

Query: 144 KGNR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K N         C E      +S    SS+ FET+ SD  SQ EE++LS  L       F
Sbjct: 197 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFETDQSDT-SQDEEDSLSKALFQPSSHIF 256

Query: 204 PKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
           PKLE   Y D     C    GF +ED A  FW
Sbjct: 257 PKLEGNDYSDPPASSCS--YGFHVEDHA--FW 283

[Close]

BLAST of CmaCh05G009440 vs. NCBI nr
Match: gi|823122186|ref|XP_012469815.1| (PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 114/212 (53.77%), Postives = 135/212 (63.68%), Query Frame = 1


Query: 24  FIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + +  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 75  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 134

Query: 84  VAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGE 143
           VAIWFQNRRAR KTKQLEKDY +L+ S++ LK  Y +L++EK++L+ E+  L ++L   E
Sbjct: 135 VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEVLQLTDKLVMKE 194

Query: 144 KGNR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K N         C E      +S    SS+ FE + SD  SQ EE+NLS  L       F
Sbjct: 195 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFEPDQSDT-SQDEEDNLSKALFQPSSYIF 254

Query: 204 PKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
           PKLE   Y D     C    GF +ED A  FW
Sbjct: 255 PKLEDNDYSDPPASSCS--YGFHVEDHA--FW 281

[Close]

BLAST of CmaCh05G009440 vs. NCBI nr
Match: gi|823122184|ref|XP_012469806.1| (PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 114/212 (53.77%), Postives = 135/212 (63.68%), Query Frame = 1


Query: 24  FIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + +  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 77  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 136

Query: 84  VAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLANGE 143
           VAIWFQNRRAR KTKQLEKDY +L+ S++ LK  Y +L++EK++L+ E+  L ++L   E
Sbjct: 137 VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEVLQLTDKLVMKE 196

Query: 144 KGNR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K N         C E      +S    SS+ FE + SD  SQ EE+NLS  L       F
Sbjct: 197 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFEPDQSDT-SQDEEDNLSKALFQPSSYIF 256

Query: 204 PKLESCYYDDDLTDGCCNLVGFQIEDQALGFW 224
           PKLE   Y D     C    GF +ED A  FW
Sbjct: 257 PKLEDNDYSDPPASSCS--YGFHVEDHA--FW 283

The following BLAST results are available for this feature:

BLAST of CmaCh05G009440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HOX4_ORYSJ	3.7e-29	50.70	Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=...	[more]
HOX4_ORYSI	3.7e-29	50.70	Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 ...	[more]
HAT5_ARATH	3.7e-29	67.01	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1	[more]
ATHB6_ARATH	1.4e-28	64.71	Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV...	[more]
ATB16_ARATH	4.1e-28	63.21	Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 ...	[more]

BLAST of CmaCh05G009440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0P3V0_GOSAR	1.7e-41	53.77	Homeobox-leucine zipper HAT5-like protein OS=Gossypium arboreum GN=F383_24602 PE...	[more]
A0A0D2LVS4_GOSRA	1.7e-41	53.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G073600 PE=4 SV=1	[more]
A0A0D2QLT7_GOSRA	1.7e-41	53.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G073600 PE=4 SV=1	[more]
A0A0D2PMW7_GOSRA	1.7e-41	53.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G073600 PE=4 SV=1	[more]
A0A061ED87_THECC	6.2e-39	50.25	Homeobox-leucine zipper protein HAT5, putative isoform 2 OS=Theobroma cacao GN=T...	[more]

BLAST of CmaCh05G009440 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01470.1	2.1e-30	67.01	homeobox 1	[more]
AT2G22430.1	8.0e-30	64.71	homeobox protein 6	[more]
AT4G40060.1	2.3e-29	63.21	homeobox protein 16	[more]
AT3G01220.1	5.8e-28	40.93	homeobox protein 20	[more]
AT5G65310.1	1.7e-27	61.32	homeobox protein 5	[more]

BLAST of CmaCh05G009440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|297734030\|emb\|CBI15277.3\|	3.9e-42	52.34	unnamed protein product [Vitis vinifera]	[more]
gi\|763740746\|gb\|KJB08245.1\|	2.5e-41	53.77	hypothetical protein B456_001G073600 [Gossypium raimondii]	[more]
gi\|728840144\|gb\|KHG19587.1\|	2.5e-41	53.77	Homeobox-leucine zipper HAT5 -like protein [Gossypium arboreum]	[more]
gi\|823122186\|ref\|XP_012469815.1\|	2.5e-41	53.77	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2 [Gossypium raimo...	[more]
gi\|823122184\|ref\|XP_012469806.1\|	2.5e-41	53.77	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 [Gossypium raimo...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000047	HTH_motif
IPR001356	Homeobox_dom
IPR003106	Leu_zip_homeo
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G009440.1	CmaCh05G009440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 69..78 score: 2.4E-6coord: 78..94 score: 2.
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 43..96 score: 2.6
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 41..102 score: 5.8
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 38..98 score: 17
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 98..139 score: 5.4
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 45..104 score: 2.3
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 34..100 score: 2.52
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 73..96 scor
None	No IPR available	unknown	Coil	Coil	coord: 111..145 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 198..224 score: 1.2E-61coord: 24..178 score: 1.2
None	No IPR available	PANTHER	PTHR24326:SF190	SUBFAMILY NOT NAMED	coord: 198..224 score: 1.2E-61coord: 24..178 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G009440	CmoCh05G009640	Cucurbita moschata (Rifu)	cmacmoB787
CmaCh05G009440	Cp4.1LG11g07640	Cucurbita pepo (Zucchini)	cmacpeB767
CmaCh05G009440	Carg21910	Silver-seed gourd	carcmaB0290

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh05G009440	CmaCh04G016280	Cucurbita maxima (Rimu)	cmacmaB541

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G009440	Cucurbita pepo (Zucchini)	cmacpeB800
CmaCh05G009440	Bottle gourd (USVL1VR-Ls)	cmalsiB738
CmaCh05G009440	Cucumber (Gy14) v2	cgybcmaB847
CmaCh05G009440	Melon (DHL92) v3.6.1	cmamedB819
CmaCh05G009440	Silver-seed gourd	carcmaB0174
CmaCh05G009440	Silver-seed gourd	carcmaB0175
CmaCh05G009440	Cucumber (Chinese Long) v3	cmacucB0953
CmaCh05G009440	Watermelon (97103) v2	cmawmbB831
CmaCh05G009440	Wax gourd	cmawgoB0942
CmaCh05G009440	Cucurbita maxima (Rimu)	cmacmaB198
CmaCh05G009440	Cucurbita maxima (Rimu)	cmacmaB201
CmaCh05G009440	Cucumber (Gy14) v1	cgycmaB0096
CmaCh05G009440	Cucurbita moschata (Rifu)	cmacmoB771
CmaCh05G009440	Wild cucumber (PI 183967)	cmacpiB818
CmaCh05G009440	Cucumber (Chinese Long) v2	cmacuB807
CmaCh05G009440	Melon (DHL92) v3.5.1	cmameB726
CmaCh05G009440	Watermelon (Charleston Gray)	cmawcgB710
CmaCh05G009440	Watermelon (97103) v1	cmawmB752