Carg21910 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21910
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox-leucine zipper protein
Location	Cucurbita_argyrosperma_scaffold_111 : 403557 .. 404564 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCTCTGTTTTTTCTCTCTCTCTCTCTTCGAACTTCTCATACTTCACGTAACTCTCTGTTTCTCTCTCTTTGTTTCTCTCTGCCACAGCTATGGCGGACGGAGCAGTTTACGCGCCACCTTCCTCCGACGTGCTTGATTCCCTCATAATTCCCGGTAAGAATCTTGAATAATTCATGGGTTTTCCGGCAAATTCTGAGCTGACCCATTAATGTTTTTCAGGCGAGTTCATCGGAGAGACCAACGAAGACGAATTACTCGACGGAATATGGCGGCAAGCTTCAAAAAAACGGCGGCTGTCGGTGGATCAAGTTCAATTTCTAGAGAAAAGCTTCGAAGTGGAAAACAAGCTGGAACCAGAGAGAAAAACCCAATTAGCTAAAGAATTGGGTCTTCAACCAAGACAAGTAGCGATCTGGTTCCAAAACAGACGAGCTCGTTGCAAAACAAAGCAGCTAGAAAAGGATTACTTGTCACTCAAAACCAGCTATGATAATCTCAAATCCAGCTACGAAGATCTTGTTCGTGAAAAGGAAGAACTTGAAACAGAGATTCGGAATTTGGAAGAGAGATTAGCGATTGGAGAGAAAGGGAAGCGAATTGATTGTTGTTGGGAGAATCAGAACTCATCAATGGCGGATTCTTCACATGGGTTTGAAACAGAGCTGTCGGATTGTTTCTCGCAGGTTGAAGAAGAGAATTTGAGTGGGGATTTGTTGCCGATTTGTTTCCCCAAATTGGAAAGCTGTTATTATGATGATGATTTAACGGATGGTTGTTGTAATTTAATTGGATTCCAGATTCAAGATCAACCCTTGGGTTTCTGGCCTTGTTGACACAATTTTATCTGGAATTACTCTGTTCTTCAATTATGCTTAAATATACGTATTTTAAAGCTAATAAACTTAAATTATGTGGGTTTTGTCAATATTTTTGCCTAATATATATATATACATTATAAACGCTACATTAATAATTAAAATTTCATAGCTTAACGTGAAATATTTG

mRNA sequence

TCTCCTCTGTTTTTTCTCTCTCTCTCTCTTCGAACTTCTCATACTTCACGTAACTCTCTGTTTCTCTCTCTTTGTTTCTCTCTGCCACAGCTATGGCGGACGGAGCAGTTTACGCGCCACCTTCCTCCGACGTGCTTGATTCCCTCATAATTCCCGGCGAGTTCATCGGAGAGACCAACGAAGACGAATTACTCGACGGAATATGGCGGCAAGCTTCAAAAAAACGGCGGCTGTCGGTGGATCAAGTTCAATTTCTAGAGAAAAGCTTCGAAGTGGAAAACAAGCTGGAACCAGAGAGAAAAACCCAATTAGCTAAAGAATTGGGTCTTCAACCAAGACAAGTAGCGATCTGGTTCCAAAACAGACGAGCTCGTTGCAAAACAAAGCAGCTAGAAAAGGATTACTTGTCACTCAAAACCAGCTATGATAATCTCAAATCCAGCTACGAAGATCTTGTTCGTGAAAAGGAAGAACTTGAAACAGAGATTCGGAATTTGGAAGAGAGATTAGCGATTGGAGAGAAAGGGAAGCGAATTGATTGTTGTTGGGAGAATCAGAACTCATCAATGGCGGATTCTTCACATGGGTTTGAAACAGAGCTGTCGGATTGTTTCTCGCAGGTTGAAGAAGAGAATTTGAGTGGGGATTTGTTGCCGATTTGTTTCCCCAAATTGGAAAGCTGTTATTATGATGATGATTTAACGGATGGTTGTTGTAATTTAATTGGATTCCAGATTCAAGATCAACCCTTGGGTTTCTGGCCTTGTTGACACAATTTTATCTGGAATTACTCTGTTCTTCAATTATGCTTAAATATACGTATTTTAAAGCTAATAAACTTAAATTATGTGGGTTTTGTCAATATTTTTGCCTAATATATATATATACATTATAAACGCTACATTAATAATTAAAATTTCATAGCTTAACGTGAAATATTTG

Coding sequence (CDS)

ATGGCGGACGGAGCAGTTTACGCGCCACCTTCCTCCGACGTGCTTGATTCCCTCATAATTCCCGGCGAGTTCATCGGAGAGACCAACGAAGACGAATTACTCGACGGAATATGGCGGCAAGCTTCAAAAAAACGGCGGCTGTCGGTGGATCAAGTTCAATTTCTAGAGAAAAGCTTCGAAGTGGAAAACAAGCTGGAACCAGAGAGAAAAACCCAATTAGCTAAAGAATTGGGTCTTCAACCAAGACAAGTAGCGATCTGGTTCCAAAACAGACGAGCTCGTTGCAAAACAAAGCAGCTAGAAAAGGATTACTTGTCACTCAAAACCAGCTATGATAATCTCAAATCCAGCTACGAAGATCTTGTTCGTGAAAAGGAAGAACTTGAAACAGAGATTCGGAATTTGGAAGAGAGATTAGCGATTGGAGAGAAAGGGAAGCGAATTGATTGTTGTTGGGAGAATCAGAACTCATCAATGGCGGATTCTTCACATGGGTTTGAAACAGAGCTGTCGGATTGTTTCTCGCAGGTTGAAGAAGAGAATTTGAGTGGGGATTTGTTGCCGATTTGTTTCCCCAAATTGGAAAGCTGTTATTATGATGATGATTTAACGGATGGTTGTTGTAATTTAATTGGATTCCAGATTCAAGATCAACCCTTGGGTTTCTGGCCTTGTTGA

Protein sequence

MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSLKTSYDNLKSSYEDLVREKEELETEIRNLEERLAIGEKGKRIDCCWENQNSSMADSSHGFETELSDCFSQVEEENLSGDLLPICFPKLESCYYDDDLTDGCCNLIGFQIQDQPLGFWPC

Homology

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BLAST of Carg21910 vs. NCBI nr
Match: XP_022946027.1 (homeobox-leucine zipper protein HOX4-like [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 1.4e-104
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFE 60
           MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFE
Sbjct: 36  MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFE 95

Query: 61  VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX 120
           VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX
Sbjct: 96  VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX 155

Query: 121 XXXXXXXXXXXXXXXXXXXAIGEKGKRIDCCWENQNSSMADSSHGFETELSDCFSQVEEE 180
           XXXXXXXXXXXXXXXXXXXAIGEKGKRIDCCWENQNSSMADSSHGFETELSDCFSQVEEE
Sbjct: 156 XXXXXXXXXXXXXXXXXXXAIGEKGKRIDCCWENQNSSMADSSHGFETELSDCFSQVEEE 215

Query: 181 NLSGDLLPICFPKLESCYYDDDLTDGCCNLIGFQIQDQPLGFWPC 226
           NLSGDLLPICFPKLESCYYDDDLTDGCCNLIGFQIQDQPLGFWPC
Sbjct: 216 NLSGDLLPICFPKLESCYYDDDLTDGCCNLIGFQIQDQPLGFWPC 260

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BLAST of Carg21910 vs. NCBI nr
Match: XP_022999761.1 (homeobox-leucine zipper protein HOX4-like [Cucurbita maxima])

HSP 1 Score: 370.9 bits (951), Expect = 3.0e-99
Identity = 215/225 (95.56%), Postives = 219/225 (97.33%), Query Frame = 0


Query: 1   MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFE 60
           MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDG+WR+ASKKRRLSVDQVQFLEKSFE
Sbjct: 1   MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGLWRKASKKRRLSVDQVQFLEKSFE 60

Query: 61  VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX 120
           VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX
Sbjct: 61  VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXAIGEKGKRIDCCWENQNSSMADSSHGFETELSDCFSQVEEE 180
           XXXXXXXXXXXXXXXXXXX    KG RIDCCWENQNSSMADSSHGFETELSDCFSQVEEE
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXKGNRIDCCWENQNSSMADSSHGFETELSDCFSQVEEE 180

Query: 181 NLSGDLLPICFPKLESCYYDDDLTDGCCNLIGFQIQDQPLGFWPC 226
           NLSGDLLPICFPKLESCYYDDDLTDGCCNL+GFQI+DQ LGFWPC
Sbjct: 181 NLSGDLLPICFPKLESCYYDDDLTDGCCNLVGFQIEDQALGFWPC 225

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BLAST of Carg21910 vs. NCBI nr
Match: XP_023546047.1 (homeobox-leucine zipper protein ATHB-20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.5 bits (942), Expect = 3.3e-98
Identity = 221/226 (97.79%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFE 60
           MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGIWRQASKKRRL VDQVQFLEKSFE
Sbjct: 1   MADGAVYAPPSSDVLDSLIIPGEFIGETNEDELLDGIWRQASKKRRLLVDQVQFLEKSFE 60

Query: 61  VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX 120
           VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX
Sbjct: 61  VENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXAIGEKGKRID-CCWENQNSSMADSSHGFETELSDCFSQVEE 180
           XXXXXXXXXXXXXXXXXXXAIGEKGKRID CCWENQNSSMADSSHGFETELSDCFSQVEE
Sbjct: 121 XXXXXXXXXXXXXXXXXXXAIGEKGKRIDYCCWENQNSSMADSSHGFETELSDCFSQVEE 180

Query: 181 ENLSGDLLPICFPKLESCYYDDDLTDGCCNLIGFQIQDQPLGFWPC 226
           ENLS DLLPICFPKLESC YDDDLTDG CNLIGFQIQDQPLGFWPC
Sbjct: 181 ENLSRDLLPICFPKLESCSYDDDLTDG-CNLIGFQIQDQPLGFWPC 225

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BLAST of Carg21910 vs. NCBI nr
Match: XP_015894877.1 (homeobox-leucine zipper protein HAT5 [Ziziphus jujuba])

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 134/252 (53.17%), Postives = 156/252 (61.90%), Query Frame = 0


Query: 27  ETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAI 86
           E N D+  D  + Q  KKRRL+VDQVQFLE++FE+ENKLEPERK QLAKELGLQPRQVAI
Sbjct: 70  EENGDDDYDACFHQPGKKRRLTVDQVQFLERNFELENKLEPERKVQLAKELGLQPRQVAI 129

Query: 87  WFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGEKGK 146
           WFQNRRAR KTKQLEKDY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EKGK
Sbjct: 130 WFQNRRARFKTKQLEKDYDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTKEKGK 189

Query: 147 R--------------------------------IDCCWENQNSSMAD------------- 206
                                            + C  E+ +S+ +D             
Sbjct: 190 ENLETQNAINSPNSEPQDPIQNTASGNASNVPMVVCKQEDASSAKSDVFDSDSPHYAENH 249

Query: 207 --------SSHGFETELSDCFSQVEEENLSGDLL-PICFPKLESCYYDDDLTDGCCNLIG 225
                   SSH FE + SD FSQ E++NLS  LL P+ FPK+E+  YDD   + C   +G
Sbjct: 250 SSLLEPAGSSHVFEPDQSD-FSQDEDDNLSKSLLPPLYFPKMETSCYDDPPANSC--NLG 309

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BLAST of Carg21910 vs. NCBI nr
Match: XP_020226777.1 (homeobox-leucine zipper protein HAT5-like [Cajanus cajan])

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-31
Identity = 105/256 (41.02%), Postives = 122/256 (47.66%), Query Frame = 0


Query: 27  ETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAI 86
           E N DE  +G + Q  KKRRL+ +QVQFLE++FEVENKLEPERK QLAKELGLQPRQVAI
Sbjct: 70  EENCDEDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAI 129

Query: 87  WFQNRRARCKTKQLEKDY----------------------------------LSXXXXXX 146
           WFQNRRAR KTKQLEKDY                                  L       
Sbjct: 130 WFQNRRARFKTKQLEKDYGALKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLILRGKEK 189

Query: 147 XXXXXXXXXXXXXXXXXXXXXXXXXXXAIGEKGKRID------CCWENQNSSM------- 206
                                      A  E G ++       C  E+ NS+        
Sbjct: 190 ENLDDKSSPDAVNSPHKEPMDLISNSNATSENGTKVSLPIMVTCKQEDANSTKSDVLDSD 249

Query: 207 ----------ADSSHGFETELSDCFSQVEEENLSGDLLPI-CFPKLESCYYDDDLTDGCC 225
                     ADSSH FE E SD FSQ EE+NLS +LL + C PK+E   YD    +  C
Sbjct: 250 SPHCTSFVEPADSSHAFEPEHSD-FSQDEEDNLSENLLTLPCLPKVEEPCYDHP-PENSC 309

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BLAST of Carg21910 vs. TAIR10
Match: AT4G40060.1 (homeobox protein 16)

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-24
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           + KKRRL VDQV+ LEK+FE+ENKLEPERKT+LA+ELGLQPRQVA+WFQNRRAR KTKQL
Sbjct: 57  SEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQL 116

Query: 101 EKDY 105
           EKDY
Sbjct: 117 EKDY 120

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BLAST of Carg21910 vs. TAIR10
Match: AT2G22430.1 (homeobox protein 6)

HSP 1 Score: 105.9 bits (263), Expect = 3.3e-23
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           + KKRRLS++QV+ LEK+FE+ENKLEPERK +LA+ELGLQPRQVA+WFQNRRAR KTKQL
Sbjct: 60  SEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 119

Query: 101 EKDY 105
           EKDY
Sbjct: 120 EKDY 123

[Close]

BLAST of Carg21910 vs. TAIR10
Match: AT5G65310.1 (homeobox protein 5)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-23
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           A KKRRL V+QV+ LEK+FE++NKLEPERK +LA+ELGLQPRQVAIWFQNRRAR KTKQL
Sbjct: 70  AEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQL 129

Query: 101 EKDY 105
           E+DY
Sbjct: 130 ERDY 133

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BLAST of Carg21910 vs. TAIR10
Match: AT1G69780.1 (Homeobox-leucine zipper protein family)

HSP 1 Score: 102.1 bits (253), Expect = 4.7e-22
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 30  EDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQ 89
           E++  D   +   KKRRL+++QV+ LEK+FE+ NKLEPERK QLA+ LGLQPRQ+AIWFQ
Sbjct: 72  EEDYSDDGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQ 131

Query: 90  NRRARCKTKQLEKDY 105
           NRRAR KTKQLEKDY
Sbjct: 132 NRRARWKTKQLEKDY 146

[Close]

BLAST of Carg21910 vs. TAIR10
Match: AT5G15150.1 (homeobox 3)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-21
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 43  KKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQLEK 102
           KK+RL+++QV+ LEKSFE+ NKLEPERK QLAK LGLQPRQ+AIWFQNRRAR KTKQLE+
Sbjct: 115 KKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLER 174

Query: 103 DY 105
           DY
Sbjct: 175 DY 176

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BLAST of Carg21910 vs. Swiss-Prot
Match: sp|Q940J1|ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana OX=3702 GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 9.1e-23
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           + KKRRL VDQV+ LEK+FE+ENKLEPERKT+LA+ELGLQPRQVA+WFQNRRAR KTKQL
Sbjct: 57  SEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQL 116

Query: 101 EKDY 105
           EKDY
Sbjct: 117 EKDY 120

[Close]

BLAST of Carg21910 vs. Swiss-Prot
Match: sp|P46668|ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-22
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           + KKRRLS++QV+ LEK+FE+ENKLEPERK +LA+ELGLQPRQVA+WFQNRRAR KTKQL
Sbjct: 60  SEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 119

Query: 101 EKDY 105
           EKDY
Sbjct: 120 EKDY 123

[Close]

BLAST of Carg21910 vs. Swiss-Prot
Match: sp|P46667|ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana OX=3702 GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 41  ASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARCKTKQL 100
           A KKRRL V+QV+ LEK+FE++NKLEPERK +LA+ELGLQPRQVAIWFQNRRAR KTKQL
Sbjct: 70  AEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQL 129

Query: 101 EKDY 105
           E+DY
Sbjct: 130 ERDY 133

[Close]

BLAST of Carg21910 vs. Swiss-Prot
Match: sp|A2X980|HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=HOX16 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.0e-21
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 28  TNEDELLDGIW---RQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQV 87
           T  DELL+  +   +   KKRRL+ +QV  LE+SFE ENKLEPERKT+LA++LGLQPRQV
Sbjct: 61  TTPDELLEEEYYDEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQV 120

Query: 88  AIWFQNRRARCKTKQLEKDY 105
           A+WFQNRRAR KTKQLE+D+
Sbjct: 121 AVWFQNRRARWKTKQLERDF 140

[Close]

BLAST of Carg21910 vs. Swiss-Prot
Match: sp|Q6YWR4|HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX16 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.0e-21
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 28  TNEDELLDGIW---RQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQV 87
           T  DELL+  +   +   KKRRL+ +QV  LE+SFE ENKLEPERKT+LA++LGLQPRQV
Sbjct: 59  TTPDELLEEEYYDEQLPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQV 118

Query: 88  AIWFQNRRARCKTKQLEKDY 105
           A+WFQNRRAR KTKQLE+D+
Sbjct: 119 AVWFQNRRARWKTKQLERDF 138

[Close]

BLAST of Carg21910 vs. TrEMBL
Match: tr|Q93XA4|Q93XA4_PHAVU (Homeodomain leucine zipper protein HDZ2 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G067200g PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 131/260 (50.38%), Postives = 151/260 (58.08%), Query Frame = 0


Query: 27  ETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAI 86
           E N D+  +G + Q  KKRRL+ +QVQFLE++FEVENKLEPERK QLAKELGLQPRQVAI
Sbjct: 70  EDNCDDDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAI 129

Query: 87  WFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGEKGK 146
           WFQNRRAR KTKQLEKDY + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   + +K K
Sbjct: 130 WFQNRRARFKTKQLEKDYGTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLILRDKEK 189

Query: 147 R--------------------------------------IDCCWENQNSSM--------- 206
                                                  + C  E+ NS+          
Sbjct: 190 ENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSP 249

Query: 207 --------------ADSSHGFETELSDCFSQVEEENLSGDLLPI-CFPKLESCYYDDDLT 225
                         ADSSH FE + SD FSQ EE+NLS  LL + C PK+E   YDD   
Sbjct: 250 HCTDGNHPSSFVEPADSSHAFEPDHSD-FSQDEEDNLSESLLTLPCLPKVEEACYDDP-P 309

[Close]

BLAST of Carg21910 vs. TrEMBL
Match: tr|A0A0L9VNR3|A0A0L9VNR3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g227600 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 131/260 (50.38%), Postives = 151/260 (58.08%), Query Frame = 0


Query: 27  ETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAI 86
           E N D+  +G + Q  KKRRL+ +QVQFLE++FEVENKLEPERK QLAKELGLQPRQVAI
Sbjct: 70  EENCDDDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAI 129

Query: 87  WFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGEKGK 146
           WFQNRRAR KTKQLEKDY + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   + +K K
Sbjct: 130 WFQNRRARFKTKQLEKDYGTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLILRDKEK 189

Query: 147 R--------------------------------------IDCCWENQNSSM--------- 206
                                                  + C  E+ NS+          
Sbjct: 190 ENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSP 249

Query: 207 --------------ADSSHGFETELSDCFSQVEEENLSGDLLPI-CFPKLESCYYDDDLT 225
                         ADSSH FE + SD FSQ EE+NLS  LL + C PK+E   YDD   
Sbjct: 250 HCTDGNHPSSFVEPADSSHAFEPDHSD-FSQDEEDNLSESLLTLPCLPKVEEACYDDP-P 309

[Close]

BLAST of Carg21910 vs. TrEMBL
Match: tr|A0A0S3T340|A0A0S3T340_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G071900 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 131/260 (50.38%), Postives = 151/260 (58.08%), Query Frame = 0


Query: 27  ETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAI 86
           E N D+  +G + Q  KKRRL+ +QVQFLE++FEVENKLEPERK QLAKELGLQPRQVAI
Sbjct: 70  EENCDDDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAI 129

Query: 87  WFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGEKGK 146
           WFQNRRAR KTKQLEKDY + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   + +K K
Sbjct: 130 WFQNRRARFKTKQLEKDYGTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLILRDKEK 189

Query: 147 R--------------------------------------IDCCWENQNSSM--------- 206
                                                  + C  E+ NS+          
Sbjct: 190 ENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSP 249

Query: 207 --------------ADSSHGFETELSDCFSQVEEENLSGDLLPI-CFPKLESCYYDDDLT 225
                         ADSSH FE + SD FSQ EE+NLS  LL + C PK+E   YDD   
Sbjct: 250 HCTDGNHPSSFVEPADSSHAFEPDHSD-FSQDEEDNLSESLLTLPCLPKVEEACYDDP-P 309

[Close]

BLAST of Carg21910 vs. TrEMBL
Match: tr|A0A2P5FQF3|A0A2P5FQF3_9ROSA (Octamer-binding transcription factor OS=Trema orientalis OX=63057 GN=TorRG33x02_041590 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 130/250 (52.00%), Postives = 147/250 (58.80%), Query Frame = 0


Query: 27  ETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAI 86
           + N D+  DG + Q  KKRRLS  QVQFLEK+FE+ENKLEP+RK QLAKELGLQPRQVAI
Sbjct: 69  DENGDDDYDGCFHQPGKKRRLSTTQVQFLEKNFELENKLEPDRKLQLAKELGLQPRQVAI 128

Query: 87  WFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGEKGK 146
           WFQNRRAR KTKQLEK    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  I EKG 
Sbjct: 129 WFQNRRARYKTKQLEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVIKEKGS 188

Query: 147 RID-------------------------CCWENQNSSM---------------------A 206
           + +                         C  E+ +S+                      A
Sbjct: 189 KENLENAEPENPTLKTVSETVSNVVMGVCKQEDASSAKSDVFDSDSPHYAENYCSMLEPA 248

Query: 207 DSSHGFETELSDCFSQVEEEN---LSGDLLP---ICFPKLESCYYDDDLTDGCCNLIGFQ 225
           DSSH FE      FSQ E++    +S  L P    CFPKLE+CYYD      C    GFQ
Sbjct: 249 DSSHVFEPADHSDFSQDEDDTNNLMSQSLFPPPLPCFPKLEACYYDGTPASSC--NFGFQ 308

[Close]

BLAST of Carg21910 vs. TrEMBL
Match: tr|A0A1U8NZF7|A0A1U8NZF7_GOSHI (homeobox-leucine zipper protein HAT5-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107953517 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 100/212 (47.17%), Postives = 110/212 (51.89%), Query Frame = 0


Query: 24  FIGETNEDELLDGIWRQASKKRRLSVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 83
           F  E N DE LD  + Q  KKRRL+VDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ
Sbjct: 75  FDEEENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQ 134

Query: 84  VAIWFQNRRARCKTKQLEKDYLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGE 143
           VAIWFQNRRAR KTKQLEKDY +                                  + E
Sbjct: 135 VAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEVLQLTDKLVMKE 194

Query: 144 KGKR-----IDCCWENQ----NSSMADSSHGFETELSDCFSQVEEENLSGDLL---PICF 203
           K           C E      +S    SS+ FE + SD  SQ EE+NLS  L       F
Sbjct: 195 KNNSELSDVNTVCQEPPQKPVDSDSPHSSYPFEPDQSDT-SQDEEDNLSKALFQPSSYIF 254

Query: 204 PKLESCYYDDDLTDGCCNLIGFQIQDQPLGFW 224
           PKLE   Y D     C    GF ++D    FW
Sbjct: 255 PKLEDNDYSDPPASSCS--YGFHVEDH--AFW 281

The following BLAST results are available for this feature:

BLAST of Carg21910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946027.1	1.4e-104	100.00	homeobox-leucine zipper protein HOX4-like [Cucurbita moschata]	[more]
XP_022999761.1	3.0e-99	95.56	homeobox-leucine zipper protein HOX4-like [Cucurbita maxima]	[more]
XP_023546047.1	3.3e-98	97.79	homeobox-leucine zipper protein ATHB-20-like [Cucurbita pepo subsp. pepo]	[more]
XP_015894877.1	1.9e-32	53.17	homeobox-leucine zipper protein HAT5 [Ziziphus jujuba]	[more]
XP_020226777.1	1.6e-31	41.02	homeobox-leucine zipper protein HAT5-like [Cajanus cajan]	[more]

BLAST of Carg21910 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G40060.1	5.0e-24	82.81	homeobox protein 16	[more]
AT2G22430.1	3.3e-23	79.69	homeobox protein 6	[more]
AT5G65310.1	5.6e-23	79.69	homeobox protein 5	[more]
AT1G69780.1	4.7e-22	68.00	Homeobox-leucine zipper protein family	[more]
AT5G15150.1	1.8e-21	79.03	homeobox 3	[more]

BLAST of Carg21910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q940J1\|ATB16_ARATH	9.1e-23	82.81	Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana OX=3702 GN=ATHB-...	[more]
sp\|P46668\|ATHB6_ARATH	5.9e-22	79.69	Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6...	[more]
sp\|P46667\|ATHB5_ARATH	1.0e-21	79.69	Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana OX=3702 GN=ATHB-5...	[more]
sp\|A2X980\|HOX16_ORYSI	5.0e-21	66.25	Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q6YWR4\|HOX16_ORYSJ	5.0e-21	66.25	Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of Carg21910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q93XA4\|Q93XA4_PHAVU	1.1e-30	50.38	Homeodomain leucine zipper protein HDZ2 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_0...	[more]
tr\|A0A0L9VNR3\|A0A0L9VNR3_PHAAN	1.1e-30	50.38	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g227600 PE...	[more]
tr\|A0A0S3T340\|A0A0S3T340_PHAAN	1.1e-30	50.38	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G...	[more]
tr\|A0A2P5FQF3\|A0A2P5FQF3_9ROSA	2.0e-30	52.00	Octamer-binding transcription factor OS=Trema orientalis OX=63057 GN=TorRG33x02_...	[more]
tr\|A0A1U8NZF7\|A0A1U8NZF7_GOSHI	2.0e-30	47.17	homeobox-leucine zipper protein HAT5-like isoform X2 OS=Gossypium hirsutum OX=36...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS
IPR003106	Leu_zip_homeo
IPR001356	Homeobox_dom
IPR000047	HTH_motif

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21910-RA	Carg21910-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..145
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 47..96 e-value: 5.6E-18 score: 66.3
None	No IPR available	PANTHER	PTHR24326:SF306	SUBFAMILY NOT NAMED	coord: 159..218 coord: 27..147
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 27..147
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 159..218
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 69..78 score: 48.35 coord: 78..94 score: 61.56
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 41..102 e-value: 5.8E-19 score: 79.0
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 43..96 e-value: 2.6E-16 score: 59.1
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 38..98 score: 17.265
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 43..99 e-value: 9.26467E-18 score: 73.4316
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 98..139 e-value: 4.8E-13 score: 49.0
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 73..96
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 34..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21910	CmaCh05G009440	Cucurbita maxima (Rimu)	carcmaB0290
Carg21910	CmoCh05G009640	Cucurbita moschata (Rifu)	carcmoB0296
Carg21910	Cp4.1LG11g07640	Cucurbita pepo (Zucchini)	carcpeB0297

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21910	Wax gourd	carwgoB0262
Carg21910	Wax gourd	carwgoB0264
Carg21910	Cucumber (Gy14) v2	carcgybB0224
Carg21910	Cucumber (Gy14) v1	carcgyB0254
Carg21910	Wild cucumber (PI 183967)	carcpiB0241
Carg21910	Cucumber (Chinese Long) v2	carcuB0235
Carg21910	Cucumber (Chinese Long) v3	carcucB0239
Carg21910	Bottle gourd (USVL1VR-Ls)	carlsiB188
Carg21910	Melon (DHL92) v3.5.1	carmeB0216
Carg21910	Melon (DHL92) v3.6.1	carmedB0221
Carg21910	Watermelon (Charleston Gray)	carwcgB0205
Carg21910	Watermelon (97103) v1	carwmB0199
Carg21910	Watermelon (97103) v2	carwmbB0214