CmaCh05G004190 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G004190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein phosphatase 2C
Location	Cma_Chr05 : 1892543 .. 1893008 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATCAAGAGACAAAGTAAAAACTCCGGTTCTGCAACATCGTCGTGTGCTGATCTCAGGGCTGCATATCACAATTGTTTCAATCGGTTCGTTTCCGTTTTCATTCGCTAAACCCTAATTCGTTTGAAGTTCCTCGTTGTTCAAGCGATTCCGGATTTTGATTTGCAGATGGTACTCGGAGAAGCAGAGAACCCTGCGTCTCCGAGTGGTTGAAGTACAATGCTCGCCTCTCTGTATGGCTTTGATCTTTGTTCATTCCTCCATGAAAGCTGATGCGAGATAACAATCAAGATTGGCTTCATTGTCGATGTTACGCTTGAATTCATTGATTCCTGCAATTACTCAGTCATTTTTATTTACTTTGAGGCTTTTACGAATTTGAAAATCATGTCTAGTTGTTCTTCACTGTTCTTAGAATCAATATGCCTGCATTTTGAAATTCAGTTTCGGTTTCGATCTCTCC

mRNA sequence

ATGAGTATCAAGAGACAAAGTAAAAACTCCGGTTCTGCAACATCGTCGTGTGCTGATCTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGCAGAGAACCCTGCGTCTCCGAGTGGTTGAAGTACAATGCTCGCCTCTCTGTATGGCTTTGATCTTTGTTCATTCCTCCATGAAAGCTGATGCGAGATAACAATCAAGATTGGCTTCATTGTCGATGTTACGCTTGAATTCATTGATTCCTGCAATTACTCAGTCATTTTTATTTACTTTGAGGCTTTTACGAATTTGAAAATCATGTCTAGTTGTTCTTCACTGTTCTTAGAATCAATATGCCTGCATTTTGAAATTCAGTTTCGGTTTCGATCTCTCC

Coding sequence (CDS)

ATGAGTATCAAGAGACAAAGTAAAAACTCCGGTTCTGCAACATCGTCGTGTGCTGATCTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGCAGAGAACCCTGCGTCTCCGAGTGGTTGAAGTACAATGCTCGCCTCTCTGTATGGCTTTGATCTTTGTTCATTCCTCCATGAAAGCTGATGCGAGATAA

Protein sequence

MSIKRQSKNSGSATSSCADLRAAYHNCFNRWYSEKQRTLRLRVVEVQCSPLCMALIFVHSSMKADAR

Homology

[Close]

BLAST of CmaCh05G004190 vs. Swiss-Prot
Match: Y4331_ARATH (Uncharacterized protein At4g33100 OS=Arabidopsis thaliana GN=At4g33100 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.3e-06
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1


Query: 4  KRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
          K+ S ++ S+TS CADLR AYHNCFN+WYSEK
Sbjct: 6  KKDSTSARSSTSPCADLRNAYHNCFNKWYSEK 37

[Close]

BLAST of CmaCh05G004190 vs. TrEMBL
Match: A0A0A0KGU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363580 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-08
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MSIKRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
          M  KR+SK+S SATS CADLRAAYHNCFNRWYSEK
Sbjct: 16 MGFKRESKSSASATSPCADLRAAYHNCFNRWYSEK 50

[Close]

BLAST of CmaCh05G004190 vs. TrEMBL
Match: I3XLL9_CUCSA (Protein phosphatase 2C OS=Cucumis sativus GN=ABI2 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-08
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1   MSIKRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
           M  KR+SK+S SATS CADLRAAYHNCFNRWYSEK
Sbjct: 586 MGFKRESKSSASATSPCADLRAAYHNCFNRWYSEK 620

[Close]

BLAST of CmaCh05G004190 vs. TrEMBL
Match: A0A118JSH4_CYNCS (Mitochondrial distribution/morphology family 35/apoptosis OS=Cynara cardunculus var. scolymus GN=Ccrd_026634 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1


Query: 4  KRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
          KR S +S + TS CADLRAAYHNCFNRWYSEK
Sbjct: 7  KRNSSSSSTTTSPCADLRAAYHNCFNRWYSEK 38

[Close]

BLAST of CmaCh05G004190 vs. TAIR10
Match: AT4G33100.1 (AT4G33100.1 Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918))

HSP 1 Score: 52.4 bits (124), Expect = 1.3e-07
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1


Query: 4  KRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
          K+ S ++ S+TS CADLR AYHNCFN+WYSEK
Sbjct: 6  KKDSTSARSSTSPCADLRNAYHNCFNKWYSEK 37

[Close]

BLAST of CmaCh05G004190 vs. NCBI nr
Match: gi|659089445|ref|XP_008445512.1| (PREDICTED: uncharacterized protein At4g33100 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-08
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 1  MSIKRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
          M IKR+SK+S SATS CADLRAAYHNCFNRWYSEK
Sbjct: 1  MGIKRESKSSASATSPCADLRAAYHNCFNRWYSEK 35

[Close]

BLAST of CmaCh05G004190 vs. NCBI nr
Match: gi|390135785|gb|AFL56849.1| (protein phosphatase 2C [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-08
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1   MSIKRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
           M  KR+SK+S SATS CADLRAAYHNCFNRWYSEK
Sbjct: 586 MGFKRESKSSASATSPCADLRAAYHNCFNRWYSEK 620

[Close]

BLAST of CmaCh05G004190 vs. NCBI nr
Match: gi|449452913|ref|XP_004144203.1| (PREDICTED: uncharacterized protein At4g33100 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-08
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MSIKRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
          M  KR+SK+S SATS CADLRAAYHNCFNRWYSEK
Sbjct: 16 MGFKRESKSSASATSPCADLRAAYHNCFNRWYSEK 50

[Close]

BLAST of CmaCh05G004190 vs. NCBI nr
Match: gi|976900293|gb|KVH88522.1| (Mitochondrial distribution/morphology family 35/apoptosis [Cynara cardunculus var. scolymus])

HSP 1 Score: 57.8 bits (138), Expect = 8.6e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1


Query: 4  KRQSKNSGSATSSCADLRAAYHNCFNRWYSEK 36
          KR S +S + TS CADLRAAYHNCFNRWYSEK
Sbjct: 7  KRNSSSSSTTTSPCADLRAAYHNCFNRWYSEK 38

The following BLAST results are available for this feature:

BLAST of CmaCh05G004190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4331_ARATH	2.3e-06	68.75	Uncharacterized protein At4g33100 OS=Arabidopsis thaliana GN=At4g33100 PE=3 SV=1	[more]

BLAST of CmaCh05G004190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGU3_CUCSA	3.8e-08	82.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363580 PE=4 SV=1	[more]
I3XLL9_CUCSA	3.8e-08	82.86	Protein phosphatase 2C OS=Cucumis sativus GN=ABI2 PE=3 SV=1	[more]
A0A118JSH4_CYNCS	6.0e-06	78.13	Mitochondrial distribution/morphology family 35/apoptosis OS=Cynara cardunculus ...	[more]

BLAST of CmaCh05G004190 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33100.1	1.3e-07	68.75	Mitochondrial distribution/morphology family 35/apoptosis (InterPro:...	[more]

BLAST of CmaCh05G004190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089445\|ref\|XP_008445512.1\|	1.9e-08	85.71	PREDICTED: uncharacterized protein At4g33100 [Cucumis melo]	[more]
gi\|390135785\|gb\|AFL56849.1\|	5.4e-08	82.86	protein phosphatase 2C [Cucumis sativus]	[more]
gi\|449452913\|ref\|XP_004144203.1\|	5.4e-08	82.86	PREDICTED: uncharacterized protein At4g33100 [Cucumis sativus]	[more]
gi\|976900293\|gb\|KVH88522.1\|	8.6e-06	78.13	Mitochondrial distribution/morphology family 35/apoptosis [Cynara cardunculus va...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007918	MDM35_apoptosis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G004190.1	CmaCh05G004190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007918	Mitochondrial distribution/morphology family 35/apoptosis	PFAM	PF05254	UPF0203	coord: 12..36 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G004190	Cucsa.056160	Cucumber (Gy14) v1	cgycmaB0074
CmaCh05G004190	Csa6G363580	Cucumber (Chinese Long) v2	cmacuB805
CmaCh05G004190	MELO3C011470	Melon (DHL92) v3.5.1	cmameB724
CmaCh05G004190	CSPI06G19230	Wild cucumber (PI 183967)	cmacpiB816
CmaCh05G004190	CmoCh05G004360	Cucurbita moschata (Rifu)	cmacmoB786
CmaCh05G004190	Lsi08G008540	Bottle gourd (USVL1VR-Ls)	cmalsiB737
CmaCh05G004190	Cp4.1LG07g06090	Cucurbita pepo (Zucchini)	cmacpeB802
CmaCh05G004190	MELO3C011470.2	Melon (DHL92) v3.6.1	cmamedB817
CmaCh05G004190	CsaV3_6G032120	Cucumber (Chinese Long) v3	cmacucB0950
CmaCh05G004190	Cla97C08G152810	Watermelon (97103) v2	cmawmbB830
CmaCh05G004190	Bhi04G001169	Wax gourd	cmawgoB0947
CmaCh05G004190	CsGy6G018670	Cucumber (Gy14) v2	cgybcmaB844
CmaCh05G004190	Carg23945	Silver-seed gourd	carcmaB0977
CmaCh05G004190	Carg09302	Silver-seed gourd	carcmaB0189

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh05G004190	CmaCh12G006530	Cucurbita maxima (Rimu)	cmacmaB203

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G004190	Cucurbita pepo (Zucchini)	cmacpeB766
CmaCh05G004190	Wax gourd	cmawgoB0940
CmaCh05G004190	Watermelon (Charleston Gray)	cmawcgB709
CmaCh05G004190	Watermelon (97103) v1	cmawmB751