Carg09302 (gene) Silver-seed gourd

Overview
NameCarg09302
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein phosphatase 2C
LocationCucurbita_argyrosperma_scaffold_018 : 464443 .. 468049 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAGCAGCAATGTAATAGAATAGGTGAAGCAAACTGGGAGACTCTTCCACGTTTATGCACTATTTTCTTTGTATCAATTCCTCCTCTTGGTGCTTATCATAAGGAATTAGCAGAAATTCAGGTTATTTCTTATGTTCTTTTCAGATTCTTATACAAACATCTCATATTTCATAACACGTTTACGAATCGATCGAAAGATCAAATCATCGACTTTTTGAATGATAATCGATCCGAAATGATCTCGCATTAACGAAATATATCTAAATTGTGAACAAATTACGGAAGAATGAGCGTTGAATTGAAATGTGTATAAATTAAAGGCGCGAGGACGTACAGGGATTTCGTTGGCCGAGAAGTTTCCAAGAACAGCCGCGATTGCTTCGTCGACGGCCATTGACTGGAGTGGTAGTATCTCAATCAATGAGTATCAAGAGACAATGTGAAGGCTCCGGTTCTGCAACATCGTCGTGTGCTGATCTCAGGGCGGCATATCACAATTGTTTCAATCGGTTCGTTTCCGTTTTCATTCGCTAAACCCTAATTCGTTTGAAGTTCCTCGTTGTTCTAGCGATTCCGGTTTTTGATTTGCAGATGGTACTCGGAGAAGCGGAGAACCCTGCGTCTCTGAGTGGTTGAAGTACAGAGCTCGCCTCTCTGTATGGCTTTGATCTTTGTTCATTCCTCCATGAAAGCTGCGCGAGATAACAATCAAGATTGGCTTCATTGTCGATGGTACGCTTGAATTCATTGATTCCTGCAATTACTCAGTCATTTTTATTTACTTTGAGGCTTTTACGAACTTGAAAATCATGTCTGGTTGTTCTTCACTGTTCTTAGAATCAATATGCCTGCATTTTGAAATTCAGTTTCGATCTCTCCTCGTTTCATTTCACCATTGTTATGGAGCGTTTTGCTACTTGAGCTGTAACTCATTTGAAGAACATCTGAACTTCAATTCTAATTACTTGATTGTAACACTCGAAACCCATCGCTAGTGTATACTATTTGCTTGGGATCTCACAATCCATCCCTTGGGGACCTAGCGTCCTTATTGGCATACTGCTGTGTTTGACTCAAATACCATTTGCAACAGTCCAGCCCAACTCCACCTCTACCAGATATTGTCATATTTGGGCTTTCCCTTCTGAGCTTCCCCTTACAGTTTTACAATGCATCTACTATGGAGAGGGTCTAGCCCTACTCCGACTAATGTCTCGCACTGTTCGGCGACTGACCTTGATACCATTTGTAATAGTCTGAGACCACTGTTAGTAGATATTGTCCGCTTTGGCCTGTTATGTATCGTCGTCAGTCTCACGGTTTTGAAACGTGTCTATTAGGGAGAGGTTTCTACACCCTTATAAGGAATGCTTCGTTCTCCTCTCCAATCGATATGGGATCTCACAATCCACCTCCTTGGGGACCCAGCGTCCTCGCTACCACACTGCTTGGTGTCTGGCTCCGATACCATTTGTAATAGCCTAACCCCACCGCTAGCAGATATTGTCCTATTTAGGGTTTCCCTTACGGACTTTCCCTTAAGGTTTTAAAATGTGTCTACTATAGGGAGGATCTAACCTTACTCTGACTAGTGCCTCGCACTATCCATTGATTGGCTCACTTGTAACTGCCCCAGACCACTGCTAGTAGATATTGTCTACTTTAGCCTGTTACTAATAAGGAATGTTTCGTTCTCCTCTTCAACCAATGTAGAATCTCACAATCCACCTCTTGGAGACCTAGCGTCCTCACTGGCACACCGCCTGATGTCTGGCTCTTATACCATTTGTAACAGCCCAACTCCACTGCTAACAAATATTGTTCTCTTTGAGGTTTCCCTCAAGGTTTTAAAACTCGTCTACTATGGAGAGAGGGTCTAGCCCTACTCCGACTAGTGACTGGCTCTGATACCATTTGTAATAGCCCGAGACCACCACTAGTAGATATTATCTGCTTTGGCCCGTTACGTATCGCCGTCAACCTCACAATTTCGAAATGAGTCTACTAGAGAGAAGTTTCTATACCCTTATAAGGGTGTGGGAACCTCTCTAGCAAAGAGCTGAGATTGTTTGGGAACAAACTTATGGTGGCTCTCATGGTGCAACTTAGAGATCACTTACAAGACTACGAACCAGTTGTTGGCCCGATGAAAGGATTTGATTCAGCCATTTGATCTGTATCGATATAGATTCATTAAAAAGATCTTTCGATATATGTATTAGTGAATATGATGTTGTTTGGTATGGGGCTTCTACTCCACACAGTGCTCCAGACCAGACAAGATAAACGTATCGAAGCTAGAACTTTGGTTCATAGTCTATTACAAGGATTTTCTTATTAAAAATAGGGAGATTTTGTGTAAAAATAAACAAATCAAGAACTTTCATGAGTATGAACACCCTCGTAAGTCGTTATCACATATTTTGGATCCTCTCGATCTCTCTCGACTCTCTTCTTCACCGGACAGCCTTCGACCGAGCATTTGTAGTAGTTCCTGCATTTCGTAGATGGTCGAGCCAAACTGGATTAACAATCAAACATGTTATGTTTATGTTTAGACATAATTCATTTTCTTACCTCGGATTTGGGCTGTTCTTCACCATCTTCTTTCCATACTTCCTCCACTTGAAACCATCATCGAGAACCTCAACTTCTGATTTGGTCTTGAATGCAAATCTTTCTCTAACTTCCCTCTCTCTCCCACTGTCTCCTACTAACACCATTAAACATCATTCATCAGGCCACACACCTTTCAGAAAAGGAGAAGGATAAGTCTGCTAGTAGCAGATATTGTTCGTTTTAGTTCATAACGCATTACCATCAACCTCATAATTTTAAAACGCGTCTGTTAGGGAGAGATTTCCACACCCGTATAAGGAATGTTTTGCTCCCCTCTCCCACCGATGTGATCTCACAATCCACCTCCCTTGATTTCCCAGCATTCTCGTTGGCACACCACTCAGTGTCGGGCTCTAATGCCATTTATAACAACTCAAGCCCACTGCTAGCAGATATTGTCTGCTATGGCCGTTACGTATTGCCGTTAGCCTCACATCACAGTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAGGAAAACTTCGTTCTCCTCTTCAACCAATGTGGGACCTCACAATCCACTCCATTGGGTTCCAGCGTCTAACTCTAATATCATTTGTAACAGCCCAAGCCCACCACTAGCAGATATTGTCTGCTTTAGCTCATTACGTATTGTCATCAACCTCACAGTTTTAAAACGCACTTGCTAGAGAGAGGTTTCCACACTCTTAAAAAAAATATTTCATTTTCCTCTCTAACCAACGTGAAAACTCTTGTTTTAGTGATGGTTAGCGGAAAAGACTTACAATCACTAAAATGTAATAATAAGAGTTATGCTTACTACTGCTAGGTTCTCCTTGCTGAATTGTGCTTCCAACAAACTCCTCAATCTCCCCTGACTGATAAGCCGGGTACATCGCCGAGTCGACCAGAGGTGGAGAGTTTTCATCGAGCCACCTATCGAACATCCAGTCCGTAAACTCGAACCCCGGCTGCTCGGGAAGATCGTCCTCCGACACAACAAGGTGCTG

mRNA sequence

ATGGCTGCAGCAGCAATGCGCGAGGACGTACAGGGATTTCGTTGGCCGAGAAGTTTCCAAGAACAGCCGCGATTGCTTCGTCGACGGCCATTGACTGGAGTGGTAGTATCTCAATCAATGAGTATCAAGAGACAATGTGAAGGCTCCGGTTCTGCAACATCGTCGTGTGCTGATCTCAGGGCGGCATATCACAATTGTTTCAATCGCCGGGTACATCGCCGAGTCGACCAGAGGTGGAGAGTTTTCATCGAGCCACCTATCGAACATCCAGTCCGTAAACTCGAACCCCGGCTGCTCGGGAAGATCGTCCTCCGACACAACAAGGTGCTG

Coding sequence (CDS)

ATGGCTGCAGCAGCAATGCGCGAGGACGTACAGGGATTTCGTTGGCCGAGAAGTTTCCAAGAACAGCCGCGATTGCTTCGTCGACGGCCATTGACTGGAGTGGTAGTATCTCAATCAATGAGTATCAAGAGACAATGTGAAGGCTCCGGTTCTGCAACATCGTCGTGTGCTGATCTCAGGGCGGCATATCACAATTGTTTCAATCGCCGGGTACATCGCCGAGTCGACCAGAGGTGGAGAGTTTTCATCGAGCCACCTATCGAACATCCAGTCCGTAAACTCGAACCCCGGCTGCTCGGGAAGATCGTCCTCCGACACAACAAGGTGCTG

Protein sequence

MAAAAMREDVQGFRWPRSFQEQPRLLRRRPLTGVVVSQSMSIKRQCEGSGSATSSCADLRAAYHNCFNRRVHRRVDQRWRVFIEPPIEHPVRKLEPRLLGKIVLRHNKVL
Homology
[Close]
BLAST of Carg09302 vs. NCBI nr
Match: AFL56849.1 (protein phosphatase 2C [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 9.4e-06
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 22  QPRLLRRRPLTGVVVSQSMSIKRQCEGSGSATSSCADLRAAYHNCFNR 70
           +P +L      G++VSQ+M  KR+ + S SATS CADLRAAYHNCFNR
Sbjct: 568 RPLMLLGWSFDGMIVSQAMGFKRESKSSASATSPCADLRAAYHNCFNR 615

[Close]
BLAST of Carg09302 vs. NCBI nr
Match: XP_004144203.1 (PREDICTED: uncharacterized protein At4g33100 [Cucumis sativus] >KGN47602.1 hypothetical protein Csa_6G363580 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 33 GVVVSQSMSIKRQCEGSGSATSSCADLRAAYHNCFNR 70
          G++VSQ+M  KR+ + S SATS CADLRAAYHNCFNR
Sbjct: 9  GMIVSQAMGFKRESKSSASATSPCADLRAAYHNCFNR 45

[Close]
BLAST of Carg09302 vs. TrEMBL
Match: tr|I3XLL9|I3XLL9_CUCSA (Protein phosphatase 2C OS=Cucumis sativus OX=3659 GN=ABI2 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-06
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 22  QPRLLRRRPLTGVVVSQSMSIKRQCEGSGSATSSCADLRAAYHNCFNR 70
           +P +L      G++VSQ+M  KR+ + S SATS CADLRAAYHNCFNR
Sbjct: 568 RPLMLLGWSFDGMIVSQAMGFKRESKSSASATSPCADLRAAYHNCFNR 615

[Close]
BLAST of Carg09302 vs. TrEMBL
Match: tr|A0A0A0KGU3|A0A0A0KGU3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363580 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-06
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 33 GVVVSQSMSIKRQCEGSGSATSSCADLRAAYHNCFNR 70
          G++VSQ+M  KR+ + S SATS CADLRAAYHNCFNR
Sbjct: 9  GMIVSQAMGFKRESKSSASATSPCADLRAAYHNCFNR 45

The following BLAST results are available for this feature:
BLAST of Carg09302 vs. NCBI nr
Match NameE-valueIdentityDescription
AFL56849.19.4e-0658.33protein phosphatase 2C [Cucumis sativus][more]
XP_004144203.11.2e-0570.27PREDICTED: uncharacterized protein At4g33100 [Cucumis sativus] >KGN47602.1 hypot... [more]
BLAST of Carg09302 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg09302 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg09302 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|I3XLL9|I3XLL9_CUCSA6.2e-0658.33Protein phosphatase 2C OS=Cucumis sativus OX=3659 GN=ABI2 PE=3 SV=1[more]
tr|A0A0A0KGU3|A0A0A0KGU3_CUCSA8.2e-0670.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363580 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09302-RACarg09302-RAmRNA