CmaCh04G029900 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G029900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Location	Cma_Chr04 : 19577329 .. 19578058 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCAATTCTCTTTACAGAAAATTCGCTCAGCAGAGTATCCGTTGGGCACAGTTACAACCTGAAAGATGTTCAGACAAGAAGAATTGTGAATGTAGAAACAGCATCAAGGTTTAGATTTTCAGTCAAGGAGGTTGGGGCTACACCATTTTCTCCATGCAAATGTGTATACCCATCTTCAGATTAACCAGGTAAGGATATCAGGAAAATCCACCTATAAATCAATGGCAGCATGCAATTGCACAAGCCTGGCCTTCTCATAGAAACTAAGTTATATTCTTTAGCAGTAAAATTTCTCCTTGGAACCTTCTCTGTGACATTGAAATTTGAATTAGTAGATATATAACAGACCAAAAAGTGATCATATAAGATAAGGTTTTGAAACACAGGTACAAGACGAAAACTCCACAAGCAGGCAGAAACGAGCAGATGTCCAGCCAAAAGTATCAAAAAATGGTTTCCTGTCGATTCTTGGAGACTTGGATAACAAGAAGTATCCCATCTATATGACTGGTAAATATCAAGATGATTTAAGTTCCCTTGTCCTTCTAAACCTACAATTGAACATTTTCTTAATGTCTTCAGGCCCTACACTTTACACACTGGACAAACAAACTCTATCAATTATTCAAGGAAATCTGAAGGAAAATGTGACATCCCATGTCTTCTCCTTGCCTTTGGTGGAGCTGAAGAACCATAAGCACACTGCTGCCTCCATATGTTGCTAG

mRNA sequence

ATGGGTTCAATTCTCTTTACAGAAAATTCGCTCAGCAGAGTATCCGTTGGGCACAGTTACAACCTGAAAGATGTTCAGACAAGAAGAATTGTGAATAAACAGCATCAAGGTTTAGATTTTCAGTCAAGGAGGTTGGGGCTACACCATTTTCTCCATGCAAATGTGTATACCCATCTTCAGATTAACCAGGTACAAGACGAAAACTCCACAAGCAGGCAGAAACGAGCAGATGTCCAGCCAAAAGTATCAAAAAATGGTTTCCTGTCGATTCTTGGAGACTTGGATAACAAGAAGTATCCCATCTATATGACTGGCCCTACACTTTACACACTGGACAAACAAACTCTATCAATTATTCAAGGAAATCTGAAGGAAAATGTGACATCCCATGTCTTCTCCTTGCCTTTGGTGGAGCTGAAGAACCATAAGCACACTGCTGCCTCCATATGTTGCTAG

Coding sequence (CDS)

ATGGGTTCAATTCTCTTTACAGAAAATTCGCTCAGCAGAGTATCCGTTGGGCACAGTTACAACCTGAAAGATGTTCAGACAAGAAGAATTGTGAATAAACAGCATCAAGGTTTAGATTTTCAGTCAAGGAGGTTGGGGCTACACCATTTTCTCCATGCAAATGTGTATACCCATCTTCAGATTAACCAGGTACAAGACGAAAACTCCACAAGCAGGCAGAAACGAGCAGATGTCCAGCCAAAAGTATCAAAAAATGGTTTCCTGTCGATTCTTGGAGACTTGGATAACAAGAAGTATCCCATCTATATGACTGGCCCTACACTTTACACACTGGACAAACAAACTCTATCAATTATTCAAGGAAATCTGAAGGAAAATGTGACATCCCATGTCTTCTCCTTGCCTTTGGTGGAGCTGAAGAACCATAAGCACACTGCTGCCTCCATATGTTGCTAG

Protein sequence

MGSILFTENSLSRVSVGHSYNLKDVQTRRIVNKQHQGLDFQSRRLGLHHFLHANVYTHLQINQVQDENSTSRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYTLDKQTLSIIQGNLKENVTSHVFSLPLVELKNHKHTAASICC

Homology

[Close]

BLAST of CmaCh04G029900 vs. TrEMBL
Match: B9RCL4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689780 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-32
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQGLDFQS-RRLGLHHFLHANVYTHLQINQVQDENST 71
           S VSVGHSYNL D++TRRI+N +    +  S R +G+  F HAN+Y HLQ+ QVQD+NST
Sbjct: 229 SEVSVGHSYNLIDIRTRRILNVETASRNRVSVREVGVTPFFHANMYLHLQVEQVQDDNST 288

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SRQ+RA V PK S + FLS+LGD+D+KKYPIYMTGPTLYT       LD QTLSII+GN 
Sbjct: 289 SRQERATVLPKGSADDFLSLLGDMDDKKYPIYMTGPTLYTLCTALIDLDDQTLSIIEGNP 348

Query: 132 KENVTSHVFSLPLVELK 141
           ++   S+VFS+   E K
Sbjct: 349 QKGEASYVFSMSTREWK 365

[Close]

BLAST of CmaCh04G029900 vs. TrEMBL
Match: A0A0R0K918_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G213600 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-29
Identity = 78/131 (59.54%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQGLDFQS-RRLGLHHFLHANVYTHLQINQVQDENST 71
           S +SVGHSYNL +  TRRIVN +       S   +G   F HAN+Y HL INQVQDENS 
Sbjct: 228 SEISVGHSYNLFETSTRRIVNVETASRKRISVYEVGNTPFFHANMYLHLPINQVQDENSI 287

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SR KRA V  K SK  FLS+LGD+D+KKYPIYMTGP L+T       LDKQTLSII+GN 
Sbjct: 288 SRHKRAAVLTKESKGDFLSLLGDMDDKKYPIYMTGPLLHTLCTALIDLDKQTLSIIEGNP 347

Query: 132 KENVTSHVFSL 135
           K+   SHVFS+
Sbjct: 348 KKGDVSHVFSI 358

[Close]

BLAST of CmaCh04G029900 vs. TrEMBL
Match: I1K6C2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-29
Identity = 78/131 (59.54%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQGLDFQS-RRLGLHHFLHANVYTHLQINQVQDENST 71
           S +SVGHSYNL +  TRRIVN +       S   +G   F HAN+Y HL INQVQDENS 
Sbjct: 249 SEISVGHSYNLFETSTRRIVNVETASRKRISVYEVGNTPFFHANMYLHLPINQVQDENSI 308

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SR KRA V  K SK  FLS+LGD+D+KKYPIYMTGP L+T       LDKQTLSII+GN 
Sbjct: 309 SRHKRAAVLTKESKGDFLSLLGDMDDKKYPIYMTGPLLHTLCTALIDLDKQTLSIIEGNP 368

Query: 132 KENVTSHVFSL 135
           K+   SHVFS+
Sbjct: 369 KKGDVSHVFSI 379

[Close]

BLAST of CmaCh04G029900 vs. TrEMBL
Match: C6TEL7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-29
Identity = 78/131 (59.54%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQGLDFQS-RRLGLHHFLHANVYTHLQINQVQDENST 71
           S +SVGHSYNL +  TRRIVN +       S   +G   F HAN+Y HL INQVQDENS 
Sbjct: 228 SEISVGHSYNLFETSTRRIVNVETASRKRISVYEVGNTPFFHANMYLHLPINQVQDENSI 287

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SR KRA V  K SK  FLS+LGD+D+KKYPIYMTGP L+T       LDKQTLSII+GN 
Sbjct: 288 SRHKRAAVLTKESKGDFLSLLGDMDDKKYPIYMTGPLLHTLCTALIDLDKQTLSIIEGNP 347

Query: 132 KENVTSHVFSL 135
           K+   SHVFS+
Sbjct: 348 KKGDVSHVFSI 358

[Close]

BLAST of CmaCh04G029900 vs. TrEMBL
Match: A0A0S3QXE6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G046800 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.7e-29
Identity = 76/131 (58.02%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQGLDFQS-RRLGLHHFLHANVYTHLQINQVQDENST 71
           S VSVGHSYNL + +TRRI N +    +  S   +G   F HAN+Y HL INQV DENS 
Sbjct: 233 SEVSVGHSYNLIETKTRRIFNVETASRNRISIYEVGEKPFFHANMYLHLPINQVHDENSM 292

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SRQKRA V  K SK  FLS+LGD+D+K YPIYMTGP L+T       LD+QTLSII+GN 
Sbjct: 293 SRQKRASVLTKKSKGDFLSLLGDMDDKNYPIYMTGPLLHTLCTALIDLDEQTLSIIEGNP 352

Query: 132 KENVTSHVFSL 135
           K+   SHVFS+
Sbjct: 353 KKGAVSHVFSI 363

[Close]

BLAST of CmaCh04G029900 vs. NCBI nr
Match: gi|659081326|ref|XP_008441274.1| (PREDICTED: uncharacterized protein LOC103485456 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 7.1e-40
Identity = 94/137 (68.61%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQG-LDFQSRRLGLHHFLHANVYTHLQINQVQDENST 71
           + VSVGHSYNL DVQTRRIVN +      F    +G     HAN+YTHLQINQVQD NS 
Sbjct: 223 AEVSVGHSYNLIDVQTRRIVNVETASRYRFSVNEVGATPLFHANMYTHLQINQVQDPNSI 282

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SRQKRAD  PK SKN FLS+LGD+DNKKYPIYMTGP LYT       LD+QTLSIIQGN 
Sbjct: 283 SRQKRADDLPKESKNDFLSVLGDMDNKKYPIYMTGPMLYTLCTALIDLDEQTLSIIQGNP 342

Query: 132 KENVTSHVFSLPLVELK 141
           K+NV SHVFS+PLVELK
Sbjct: 343 KKNVISHVFSMPLVELK 359

[Close]

BLAST of CmaCh04G029900 vs. NCBI nr
Match: gi|449442062|ref|XP_004138801.1| (PREDICTED: uncharacterized protein LOC101214789 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 7.8e-39
Identity = 92/137 (67.15%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQG-LDFQSRRLGLHHFLHANVYTHLQINQVQDENST 71
           + VSVGHSYNL DVQTRRIVN +      F    +G   F HAN+YTHLQINQVQD NS 
Sbjct: 223 AEVSVGHSYNLIDVQTRRIVNVETASRYRFSVSEVGATPFFHANMYTHLQINQVQDPNSI 282

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SRQKRA+  PK SKN FLS+LGD+DNKKYPIYMTGP LYT       LD+QTLSIIQGN 
Sbjct: 283 SRQKRANDLPKESKNDFLSVLGDMDNKKYPIYMTGPMLYTLCTALIDLDEQTLSIIQGNP 342

Query: 132 KENVTSHVFSLPLVELK 141
           K+NV SHVFS+P VEL+
Sbjct: 343 KKNVISHVFSMPSVELR 359

[Close]

BLAST of CmaCh04G029900 vs. NCBI nr
Match: gi|255537663|ref|XP_002509898.1| (PREDICTED: uncharacterized protein LOC8287709 isoform X1 [Ricinus communis])

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-32
Identity = 80/137 (58.39%), Postives = 100/137 (72.99%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQGLDFQS-RRLGLHHFLHANVYTHLQINQVQDENST 71
           S VSVGHSYNL D++TRRI+N +    +  S R +G+  F HAN+Y HLQ+ QVQD+NST
Sbjct: 229 SEVSVGHSYNLIDIRTRRILNVETASRNRVSVREVGVTPFFHANMYLHLQVEQVQDDNST 288

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SRQ+RA V PK S + FLS+LGD+D+KKYPIYMTGPTLYT       LD QTLSII+GN 
Sbjct: 289 SRQERATVLPKGSADDFLSLLGDMDDKKYPIYMTGPTLYTLCTALIDLDDQTLSIIEGNP 348

Query: 132 KENVTSHVFSLPLVELK 141
           ++   S+VFS+   E K
Sbjct: 349 QKGEASYVFSMSTREWK 365

[Close]

BLAST of CmaCh04G029900 vs. NCBI nr
Match: gi|1000983070|ref|XP_015572014.1| (PREDICTED: uncharacterized protein LOC8287709 isoform X2 [Ricinus communis])

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-30
Identity = 80/141 (56.74%), Postives = 100/141 (70.92%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQGLDFQS-RRLGLHHFLHANVYTHLQINQ----VQD 71
           S VSVGHSYNL D++TRRI+N +    +  S R +G+  F HAN+Y HLQ+ Q    VQD
Sbjct: 224 SEVSVGHSYNLIDIRTRRILNVETASRNRVSVREVGVTPFFHANMYLHLQVEQLVAKVQD 283

Query: 72  ENSTSRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSII 131
           +NSTSRQ+RA V PK S + FLS+LGD+D+KKYPIYMTGPTLYT       LD QTLSII
Sbjct: 284 DNSTSRQERATVLPKGSADDFLSLLGDMDDKKYPIYMTGPTLYTLCTALIDLDDQTLSII 343

Query: 132 QGNLKENVTSHVFSLPLVELK 141
           +GN ++   S+VFS+   E K
Sbjct: 344 EGNPQKGEASYVFSMSTREWK 364

[Close]

BLAST of CmaCh04G029900 vs. NCBI nr
Match: gi|951003551|ref|XP_014507632.1| (PREDICTED: uncharacterized protein LOC106767290 [Vigna radiata var. radiata])

HSP 1 Score: 136.7 bits (343), Expect = 3.3e-29
Identity = 76/131 (58.02%), Postives = 91/131 (69.47%), Query Frame = 1


Query: 12  SRVSVGHSYNLKDVQTRRIVNKQHQGLDFQS-RRLGLHHFLHANVYTHLQINQVQDENST 71
           S VSVGHSYNL + +TRRI N +    +  S   +G   F HAN+Y HL INQV DENS 
Sbjct: 232 SEVSVGHSYNLIETKTRRIFNVETASRNRISIYEVGKKPFFHANMYLHLPINQVHDENSM 291

Query: 72  SRQKRADVQPKVSKNGFLSILGDLDNKKYPIYMTGPTLYT-------LDKQTLSIIQGNL 131
           SRQKRA V  K+SK  FLS+LGD+D+K YPIYMTGP L+T       LD+QTLSII+GN 
Sbjct: 292 SRQKRASVLTKMSKGDFLSLLGDMDDKNYPIYMTGPLLHTLCTALIDLDEQTLSIIEGNP 351

Query: 132 KENVTSHVFSL 135
           K+   SHVFS+
Sbjct: 352 KKGAVSHVFSI 362

The following BLAST results are available for this feature:

BLAST of CmaCh04G029900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G029900 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RCL4_RICCO	2.9e-32	58.39	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689780 PE=4 SV=1	[more]
A0A0R0K918_SOYBN	2.3e-29	59.54	Uncharacterized protein OS=Glycine max GN=GLYMA_05G213600 PE=4 SV=1	[more]
I1K6C2_SOYBN	2.3e-29	59.54	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
C6TEL7_SOYBN	2.3e-29	59.54	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0S3QXE6_PHAAN	6.7e-29	58.02	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G046800 PE=...	[more]

BLAST of CmaCh04G029900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G029900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081326\|ref\|XP_008441274.1\|	7.1e-40	68.61	PREDICTED: uncharacterized protein LOC103485456 [Cucumis melo]	[more]
gi\|449442062\|ref\|XP_004138801.1\|	7.8e-39	67.15	PREDICTED: uncharacterized protein LOC101214789 [Cucumis sativus]	[more]
gi\|255537663\|ref\|XP_002509898.1\|	4.1e-32	58.39	PREDICTED: uncharacterized protein LOC8287709 isoform X1 [Ricinus communis]	[more]
gi\|1000983070\|ref\|XP_015572014.1\|	2.3e-30	56.74	PREDICTED: uncharacterized protein LOC8287709 isoform X2 [Ricinus communis]	[more]
gi\|951003551\|ref\|XP_014507632.1\|	3.3e-29	58.02	PREDICTED: uncharacterized protein LOC106767290 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G029900.1	CmaCh04G029900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34180	FAMILY NOT NAMED	coord: 14..139 score: 1.6
None	No IPR available	PANTHER	PTHR34180:SF1	MUTANT TAN	coord: 14..139 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G029900	Cla011858	Watermelon (97103) v1	cmawmB727
CmaCh04G029900	Csa2G404920	Cucumber (Chinese Long) v2	cmacuB694
CmaCh04G029900	ClCG11G007690	Watermelon (Charleston Gray)	cmawcgB620
CmaCh04G029900	CmoCh15G000610	Cucurbita moschata (Rifu)	cmacmoB692
CmaCh04G029900	Lsi03G004220	Bottle gourd (USVL1VR-Ls)	cmalsiB656
CmaCh04G029900	Cp4.1LG01g25980	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G029900	CsaV3_2G033870	Cucumber (Chinese Long) v3	cmacucB0827
CmaCh04G029900	Cla97C11G215780	Watermelon (97103) v2	cmawmbB736
CmaCh04G029900	Bhi04G002013	Wax gourd	cmawgoB0860
CmaCh04G029900	CsGy2G025010	Cucumber (Gy14) v2	cgybcmaB248
CmaCh04G029900	Carg22835	Silver-seed gourd	carcmaB1497
CmaCh04G029900	Carg24292	Silver-seed gourd	carcmaB1403
CmaCh04G029900	Carg06063	Silver-seed gourd	carcmaB0033

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G029900	CmaCh15G000610	Cucurbita maxima (Rimu)	cmacmaB324

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G029900	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G029900	Melon (DHL92) v3.6.1	cmamedB762
CmaCh04G029900	Cucumber (Gy14) v1	cgycmaB0171
CmaCh04G029900	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G029900	Wild cucumber (PI 183967)	cmacpiB702
CmaCh04G029900	Melon (DHL92) v3.5.1	cmameB679