CmaCh04G026450 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G026450
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAct1
LocationCma_Chr04 : 18009964 .. 18012403 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGATGATCAGTTCACGAATACGGTATATATTTCACCCGCAATAGTTCGTGGTGTGCAAAATTTAGAGCTGAACGAATTTTGAATAATTTTGTATGCCAATGTGATTATTCTGTTTTTTTTTTTTTTTTTCCTTTAATTATTTTGTATGCCAATGTTTTAACATCCCAGCCATGCATGTGGCTGGCTAAGTTATTCTATTGCAAAAGCTTATTTGGGGGATTACATCTCTGGCAATTTCTTTGAGACCCTCTTGATTATATTGTCAGGCTGATATACAACAACTCAGCCATGTTTCGGTTCTGTTCATAGATGAAAACTTCATTCCTTCTGGTTTTAAACACCGTCATATTGTGTACGCAACCTATTCTTTTTCTGGTTTGGGTGGATTGAGTTATAAACTTATTTGAATTGGATTAAAAAAAATGAAAATTTTATATAAATTGAATTAAATTCACGATCTCCTCCACTCAAATTTATTATTAATTTTGAAAAATTGATTAAATGAGTTGAACTTGATTATTTAAAATAAAGAGATGAAATAATTGGTTTAGATTTAAAAAATATTATAATCCAACCCTGTGCGGAGTAGATAACTCAAGATAAGTGCTCTCCTATTCCGACTTCCCAAGAGCCTCCAGTAGCATAGCCAAGATAGCGATGGGATCTCTATCCTATAGGGATGGAGCGACAGAAGTTCTGAAAATTCAAGAGAAGAAGATGTTCGTCACGATAGGTGTCAAGTGGAAGTGCAATGATGTATGCAGCTGAGGCATCCTAACAGACCAATAGACTTCCTACATGACCTCCTCCATGACCAAATTAATTCGATTAGGCCAGATTAATTCGATTAGGCACTCATCTATTTTCAGCTTATTTATCCCAATTATTATTAGGCAAACACTTTTTGTAATCAATGATGTTTAGAGTCTTAAGTTATGATTACGTGGCTCGGCAACCAACTCCAGTACCTTATTGAAATCAATTATTTCAATATTAGAACAATAGCGAAGGACAAAAATGCTAAACAAACAGACAAACAAAAAAAAGGCTACAAAGTTGCCTTTCATTCCGACACATAAAACAGTACACTCCCATATGTCTTGACCCTTCGGCTTCTTTCTTGTCTTTTAGAAGCACTTCCTGTGCACAATCGATGGCCCAGACTCATCATACTCTGCCTTTGCAATCCACATCTGCACCAAAAACACAAGGGACCCATTAGTAAGAACAAAACTGAAAGCTTTTAATAATAATGTCTACCTGCTGGAAGGTACTCAGAGAAGCCAAGATGGAGCCACCAATCCAAACACTGTACTTTCTTTCTGGAGGTGCCACCACCTTGATCTTCATGCTGCTCGGCGCCAATGCAGAGATCTCCTTACTCATTCTATCGGCAATGCCCGTAAACATGGTCGAACCACCGGAGAGGACGATGTTACCATACAGATCCTTCCTAATATCCACGTCGCACTTCATGATGGAATTATATGTAGTTTCATGAATGCCCGCAGCTTCCATTCCGATCATGGATGGCTGGAAGAGAACTTCCGGACATCTAAAACGTTCGGCACCTATCGTGATGACTTGTCCATCAGGCAACTCGTAGCTCTTTTCAACTGATGAACTGGTCTTAGAAGTTTCAAGTTCCTGCTCATAGTCAAGCGCGATATATGAAAGCTTTTCCTTCATATCCCTCACAATTTCTCGCTCTGCTGTGGTCGTGAATGAGTATCCACGCTCCGTGAGAATTTTCATCAAGTTATCAGTAAGGTCACGGCCAGCAAGGTCGAGTCGAAGAATGGCGTGTGGGAGAGCATACCCCTCATAAATGGGGACTGTATGACTCACACCATCACCAGAATCCATCACAATTCCTACATAATAGAACAAGAATTCCCTAAGAACTTCAATCTTCATAGTTTTACAGTAATGATGAACTTATAGTGAACTCTCACCAGTTGTTCGACCACTGGCATATAGTGAGAGGACAGCTTGAATAGCTACATACATGGCAGGAGTGTTAAAGGTTTCAAACATGATTTGGGTCATCTTTTCACGGTTAGCTTTGGGGTTAAGAGGGGCCTCAGTTAGGAGAACAGGATGCTCCTCTGGGGCAACACGAAGCTCATTATAGAACGTGTGATGCCAAATCTTTTCCATGTCATCCCAGTTACTAACAATACCATGCTCAATTGGGTATTTCAGGGTCAAAATACCACGCTTGGATTGAGCTTCATCACCTACATAAGCATCTTTCTGGCCCATGCCGACCATCACGCCGGTGTGACGAGGTCGGCCGACAATGCTAGGGAAAACTGCTCTGGGAGCATCATCACCAGCAAATCCAGCCTAAAACAATGGCACAGGAAGAAATGCATTAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATACATAA

mRNA sequence

ATGGGAAAGATGATCAGTTCACGAATACGGTGCCACCACCTTGATCTTCATGCTGCTCGGCGCCAATGCAGAGATCTCCTTACTCATTCTATCGGCAATGCCCGTAAACATGGTCGAACCACCGGAGAGGACGATGTTACCATACAGATCCTTCCTAATATCCACGTCGCACTTCATGATGGAATTATATGTAGTTTCATGAATGCCCGCAGCTTCCATTCCGATCATGGATGGCTGGAAGAGAACTTCCGGACATCTAAAACGTTCGGCACCTATCGTGATGACTTGTCCATCAGGCAACTCGGTCAAAATACCACGCTTGGATTGAGCTTCATCACCTACATAAGCATCTTTCTGGCCCATGCCGACCATCACGCCGGTGTGACGAGGTCGGCCGACAATGCTAGGGAAAACTGCTCTGGGAGCATCATCACCAGCAAATCCAGCCTAAAACAATGGCACAGGAAGAAATGCATTAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATACATAA

Coding sequence (CDS)

ATGGGAAAGATGATCAGTTCACGAATACGGTGCCACCACCTTGATCTTCATGCTGCTCGGCGCCAATGCAGAGATCTCCTTACTCATTCTATCGGCAATGCCCGTAAACATGGTCGAACCACCGGAGAGGACGATGTTACCATACAGATCCTTCCTAATATCCACGTCGCACTTCATGATGGAATTATATGTAGTTTCATGAATGCCCGCAGCTTCCATTCCGATCATGGATGGCTGGAAGAGAACTTCCGGACATCTAAAACGTTCGGCACCTATCGTGATGACTTGTCCATCAGGCAACTCGGTCAAAATACCACGCTTGGATTGAGCTTCATCACCTACATAAGCATCTTTCTGGCCCATGCCGACCATCACGCCGGTGTGACGAGGTCGGCCGACAATGCTAGGGAAAACTGCTCTGGGAGCATCATCACCAGCAAATCCAGCCTAAAACAATGGCACAGGAAGAAATGCATTAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATAGCCATACATAA

Protein sequence

MGKMISSRIRCHHLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNARSFHSDHGWLEENFRTSKTFGTYRDDLSIRQLGQNTTLGLSFITYISIFLAHADHHAGVTRSADNARENCSGSIITSKSSLKQWHRKKCISHSHSHSHSHSHSHSHT
Homology
[Close]
BLAST of CmaCh04G026450 vs. TrEMBL
Match: A0A0P0VAR5_ORYSJ (Os01g0866133 protein OS=Oryza sativa subsp. japonica GN=Os01g0866133 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.5e-21
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1 

Query: 10  RCHHLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNA 69
           RC++LDLH AR +C   L H+I N R+H R+  +D +T+QIL NI++ALHDG++C FM+A
Sbjct: 42  RCNYLDLHTARGKCSYFLAHTITNTREHCRSPTKDHITVQILSNINIALHDGVVCGFMDA 101

Query: 70  RSFHSDHGWLEENFRTSKTFGTYRDDLSIRQL 102
           RSFH++  WLEE+ R  + F +  DDL++RQL
Sbjct: 102 RSFHTNKRWLEEHLRAPEPFCSDGDDLAVRQL 133

[Close]
BLAST of CmaCh04G026450 vs. TrEMBL
Match: J3L660_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 1 

Query: 10  RCHHLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNA 69
           R ++LDLH  R +C D L H+I N R+H R   + +VTIQI  NI++ LHDG++C FM+ 
Sbjct: 38  RRNYLDLHTTRGKCSDFLAHTITNTREHCRPPTKYNVTIQIFSNINITLHDGVVCGFMDT 97

Query: 70  RSFHSDHGWLEENFRTSKTFGTYRDDLSIRQL 102
           RSFH++  WLEE+    + F +  DDL++RQL
Sbjct: 98  RSFHTNKRWLEEHLWAPEPFCSNGDDLAVRQL 129

[Close]
BLAST of CmaCh04G026450 vs. TrEMBL
Match: A0A0L7QKB3_9HYME (Uncharacterized protein OS=Habropoda laboriosa GN=WH47_12656 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.3e-15
Identity = 55/144 (38.19%), Postives = 78/144 (54.17%), Query Frame = 1 

Query: 3   KMISSRIRCHHLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGI 62
           +++S R R + LDL     Q  + L H+IGN R HG TT +  ++IQ+L +I +ALHDG+
Sbjct: 49  RVLSLRGR-NDLDLDGRWSQGGNFLLHTIGNTRVHGSTTRQYSISIQVLTDIDIALHDGV 108

Query: 63  ICSFMNARSFHSDHGWLEENFRTSKTFGTYRDDLSIRQLGQNTTLGLSFITYISIFLAHA 122
           +   ++   FH+  GWLEE+FR ++   T  DDLSIRQL      G S  +   +F    
Sbjct: 109 VHGLVDTTGFHTQEGWLEESFRATEPLVTDGDDLSIRQLVALLKRGASCGSGHFLFKVQG 168

Query: 123 DHHAGVTRSADNARENCSGSIITS 147
           D        ADN   +  G  ITS
Sbjct: 169 DVAKFFLDVADNFSLSRGGEAITS 191

[Close]
BLAST of CmaCh04G026450 vs. TrEMBL
Match: J3N403_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.4e-14
Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = 1 

Query: 10  RCHHLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNA 69
           R  +LDLHAA R+  DLL H++ +AR+HG +T E++V IQIL +I++ LHDG++C  M+A
Sbjct: 86  RSDNLDLHAAWRERSDLLAHAVRDAREHGGSTTENNVAIQILSDINITLHDGVVCCLMDA 145

Query: 70  RSFHSDHGWLEENFRTSK 88
           R FH++ G LE + R S+
Sbjct: 146 RGFHANDGRLEHDLRASE 163

[Close]
BLAST of CmaCh04G026450 vs. TrEMBL
Match: A0A0P0VDC2_ORYSJ (Os01g0964266 protein OS=Oryza sativa subsp. japonica GN=Os01g0964266 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1 

Query: 13  HLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNARSF 72
           +LDLHAA  +  DLL H++G+AR+H   + +  V IQ+LP+I+VALHDGI+  FM++   
Sbjct: 54  NLDLHAAWSKGSDLLAHTVGDAREHCCASTQHYVAIQVLPDIYVALHDGIVGCFMDSSGL 113

Query: 73  HSDHGWLEENFRTSK 88
           H++HGWLEE+ R  K
Sbjct: 114 HTNHGWLEEDLRAPK 128

[Close]
BLAST of CmaCh04G026450 vs. NCBI nr
Match: gi|937899403|dbj|BAS75383.1| (Os01g0866133 [Oryza sativa Japonica Group])

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1 

Query: 10  RCHHLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNA 69
           RC++LDLH AR +C   L H+I N R+H R+  +D +T+QIL NI++ALHDG++C FM+A
Sbjct: 42  RCNYLDLHTARGKCSYFLAHTITNTREHCRSPTKDHITVQILSNINIALHDGVVCGFMDA 101

Query: 70  RSFHSDHGWLEENFRTSKTFGTYRDDLSIRQL 102
           RSFH++  WLEE+ R  + F +  DDL++RQL
Sbjct: 102 RSFHTNKRWLEEHLRAPEPFCSDGDDLAVRQL 133

[Close]
BLAST of CmaCh04G026450 vs. NCBI nr
Match: gi|915655295|gb|KOC59063.1| (hypothetical protein WH47_12656 [Habropoda laboriosa])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 55/144 (38.19%), Postives = 78/144 (54.17%), Query Frame = 1 

Query: 3   KMISSRIRCHHLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGI 62
           +++S R R + LDL     Q  + L H+IGN R HG TT +  ++IQ+L +I +ALHDG+
Sbjct: 49  RVLSLRGR-NDLDLDGRWSQGGNFLLHTIGNTRVHGSTTRQYSISIQVLTDIDIALHDGV 108

Query: 63  ICSFMNARSFHSDHGWLEENFRTSKTFGTYRDDLSIRQLGQNTTLGLSFITYISIFLAHA 122
           +   ++   FH+  GWLEE+FR ++   T  DDLSIRQL      G S  +   +F    
Sbjct: 109 VHGLVDTTGFHTQEGWLEESFRATEPLVTDGDDLSIRQLVALLKRGASCGSGHFLFKVQG 168

Query: 123 DHHAGVTRSADNARENCSGSIITS 147
           D        ADN   +  G  ITS
Sbjct: 169 DVAKFFLDVADNFSLSRGGEAITS 191

[Close]
BLAST of CmaCh04G026450 vs. NCBI nr
Match: gi|937900382|dbj|BAS76362.1| (Os01g0964266 [Oryza sativa Japonica Group])

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1 

Query: 13  HLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNARSF 72
           +LDLHAA  +  DLL H++G+AR+H   + +  V IQ+LP+I+VALHDGI+  FM++   
Sbjct: 54  NLDLHAAWSKGSDLLAHTVGDAREHCCASTQHYVAIQVLPDIYVALHDGIVGCFMDSSGL 113

Query: 73  HSDHGWLEENFRTSK 88
           H++HGWLEE+ R  K
Sbjct: 114 HTNHGWLEEDLRAPK 128

[Close]
BLAST of CmaCh04G026450 vs. NCBI nr
Match: gi|925170753|gb|ALC79271.1| (beta-actin, partial [Acipenser ruthenus])

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1 

Query: 14  LDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNARSFH 73
           LD H AR Q  D   HS+ NAR HG T+ +  V +Q+L +++V LHDG+    M    FH
Sbjct: 26  LDFHCARCQGCDFFLHSVCNARVHGGTSRQYSVGVQVLTDVNVTLHDGVEGGLMGTAGFH 85

Query: 74  SDHGWLEENFRTSKTFGTYRDDLSIRQL 102
           +  GWLE+     +T  +  DDL++ QL
Sbjct: 86  TQEGWLEQGLGAPETLVSDGDDLTVGQL 113

[Close]
BLAST of CmaCh04G026450 vs. NCBI nr
Match: gi|857972509|emb|CEP01546.1| (hypothetical protein PBRA_002152 [Plasmodiophora brassicae])

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-10
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 1 

Query: 10  RCHHLDLHAARRQCRDLLTHSIGNARKHGRTTGEDDVTIQILPNIHVALHDGIICSFMNA 69
           R H+LD H  RRQ   LL  +   A  HG   G DDV +Q+L ++ VALHD ++   ++A
Sbjct: 55  RGHNLDAHRRRRQGGHLLLQARRQAVVHGAAAGHDDVLVQVLADVDVALHDRLVRQLVDA 114

Query: 70  RSFHSDHGWLEENFRTSKTFGTYRDDLSIRQLGQNTTLG 109
               +DHG LEE+ R ++     RDDL++ QL     LG
Sbjct: 115 LGLVADHGRLEEDLRGAEPLVADRDDLAVGQLVGALDLG 153

The following BLAST results are available for this feature:
BLAST of CmaCh04G026450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G026450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0P0VAR5_ORYSJ3.5e-2152.17Os01g0866133 protein OS=Oryza sativa subsp. japonica GN=Os01g0866133 PE=4 SV=1[more]
J3L660_ORYBR2.3e-1747.83Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1[more]
A0A0L7QKB3_9HYME8.3e-1538.19Uncharacterized protein OS=Habropoda laboriosa GN=WH47_12656 PE=4 SV=1[more]
J3N403_ORYBR5.4e-1450.00Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1[more]
A0A0P0VDC2_ORYSJ2.1e-1350.67Os01g0964266 protein OS=Oryza sativa subsp. japonica GN=Os01g0964266 PE=4 SV=1[more]
BLAST of CmaCh04G026450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G026450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937899403|dbj|BAS75383.1|5.0e-2152.17Os01g0866133 [Oryza sativa Japonica Group][more]
gi|915655295|gb|KOC59063.1|1.2e-1438.19hypothetical protein WH47_12656 [Habropoda laboriosa][more]
gi|937900382|dbj|BAS76362.1|2.9e-1350.67Os01g0964266 [Oryza sativa Japonica Group][more]
gi|925170753|gb|ALC79271.1|1.0e-1040.91beta-actin, partial [Acipenser ruthenus][more]
gi|857972509|emb|CEP01546.1|4.0e-1040.40hypothetical protein PBRA_002152 [Plasmodiophora brassicae][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G026450.1CmaCh04G026450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G026450CmoCh15G003960Cucurbita moschata (Rifu)cmacmoB692
CmaCh04G026450Cp4.1LG13g09330Cucurbita pepo (Zucchini)cmacpeB705
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G026450Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G026450Cucurbita moschata (Rifu)cmacmoB752
CmaCh04G026450Wild cucumber (PI 183967)cmacpiB732
CmaCh04G026450Cucumber (Chinese Long) v2cmacuB725
CmaCh04G026450Melon (DHL92) v3.5.1cmameB634
CmaCh04G026450Watermelon (Charleston Gray)cmawcgB608
CmaCh04G026450Watermelon (97103) v1cmawmB652
CmaCh04G026450Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G026450Bottle gourd (USVL1VR-Ls)cmalsiB638
CmaCh04G026450Bottle gourd (USVL1VR-Ls)cmalsiB651
CmaCh04G026450Cucumber (Gy14) v2cgybcmaB546
CmaCh04G026450Cucumber (Gy14) v2cgybcmaB649
CmaCh04G026450Melon (DHL92) v3.6.1cmamedB720
CmaCh04G026450Melon (DHL92) v3.6.1cmamedB799
CmaCh04G026450Silver-seed gourdcarcmaB0374
CmaCh04G026450Silver-seed gourdcarcmaB0967
CmaCh04G026450Cucumber (Chinese Long) v3cmacucB0846
CmaCh04G026450Cucumber (Chinese Long) v3cmacucB0862
CmaCh04G026450Watermelon (97103) v2cmawmbB756
CmaCh04G026450Watermelon (97103) v2cmawmbB797
CmaCh04G026450Wax gourdcmawgoB0839
CmaCh04G026450Wax gourdcmawgoB0877
CmaCh04G026450Cucurbita maxima (Rimu)cmacmaB324
CmaCh04G026450Cucurbita maxima (Rimu)cmacmaB545
CmaCh04G026450Cucumber (Gy14) v1cgycmaB0543