CmaCh04G018070 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G018070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING finger protein
LocationCma_Chr04 : 9113831 .. 9115039 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACGTACTCTTGTACAAGGTGCTTCCCTCAACTCGAGGCATATTCACAACCTGAAATCTAAAGCTACTCAATGAAATCTAAAGCCCTCTCAATGTTTACTCAAGTATGCAGGTGTACATCGATGGACACCAACCGTTGGCGTCGCCACGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCTGCACTTCCCTCCTAACTTTTACTTTTTCCAGAGACAAACAGATCAAATTCATTAACAATGAAACCATGGCAGCTGTAATATACCCTTCACTTAGGCAACTTCGAAGTGGGCACCTCAAGTCAAAAGAAGAGACTTCTTCTAGGAAGAGAATAGAAGATCAAAAGGGGATATCTAATGAGGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAAAACTGCAGAGATGTTGTGTTGCCAAACTGTGGCCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGTACTAACAATTTTTCTTCCTTCTCACCCTCAAAACTTTCTTATTATCAGCTAACAACAGGAGTTCTGTCTGTTGTAATCTTGTCTGCAGGAGTCCGAGGTCGCGTTCCTGTCCCTTCTGCCGTAACTGTCTAAATAGGTTGAGCGCCAGGGACCTGTGGGTTCTTACAAGCGACACTGACATTGTCGACTCGGAAACTCTTACCAAGGAAAATCTAATACATTTCTACCTTTATATCGAAAGCCTGCCACTGTTTCAACCAGATGTGAGTATTTTAATACCAGATTACATGTTGTGATCCGTCGGAAGCAAGAAGCATGAAGCATGAAGCATGATCCTATGTGTTGGCCACCTCTAACATCAACTGGCAATACAATTTAAGCTGTAAGCTTGATTCTCTGCTACTGTCATCTGTTCAAATTCAAGAGATTGCAAGTAGAAAAAAGCATTGCTTTGTATGGTTCCTCGAGCACTGTCATTTGAACAACGTAATAAACTTCAACTTTCTAATAAATAACTAAACACAATGCAGATGGGGCAGTTTCAATCAAAGTAGTTTAAGAAAAAAGCTTTTAGGTGTCGCAGTGGAACAGTTGATATCAGTGATGGCTGGTCTTGCGCTCGGACAATCTCAGGACACTGAGACATCCTTAGGAGTGCTTGTTCTACAGAATCCTGATGCATTCTGA

mRNA sequence

ATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACGTACTCTTGTACAAGTATGCAGGTGTACATCGATGGACACCAACCGTTGGCGTCGCCACGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCTGCACTTCCCTCCTAACTTTTACTTTTTCCAGAGACAAACAGATCAAATTCATTAACAATGAAACCATGGCAGCTGTAATATACCCTTCACTTAGGCAACTTCGAAGTGGGCACCTCAAGTCAAAAGAAGAGACTTCTTCTAGGAAGAGAATAGAAGATCAAAAGGGGATATCTAATGAGGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAAAACTGCAGAGATGTTGTGTTGCCAAACTGTGGCCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGAGTCCGAGGTCGCGTTCCTGTCCCTTCTGCCGTAACTGTCTAAATAGGTTGAGCGCCAGGGACCTGTGGGTTCTTACAAGCGACACTGACATTGTCGACTCGGAAACTCTTACCAAGGAAAATCTAATACATTTCTACCTTTATATCGAAAGCCTGCCACTGTTTCAACCAGATGTGAGTGTCGCAGTGGAACAGTTGATATCAGTGATGGCTGGTCTTGCGCTCGGACAATCTCAGGACACTGAGACATCCTTAGGAGTGCTTGTTCTACAGAATCCTGATGCATTCTGA

Coding sequence (CDS)

ATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACGTACTCTTGTACAAGTATGCAGGTGTACATCGATGGACACCAACCGTTGGCGTCGCCACGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCTGCACTTCCCTCCTAACTTTTACTTTTTCCAGAGACAAACAGATCAAATTCATTAACAATGAAACCATGGCAGCTGTAATATACCCTTCACTTAGGCAACTTCGAAGTGGGCACCTCAAGTCAAAAGAAGAGACTTCTTCTAGGAAGAGAATAGAAGATCAAAAGGGGATATCTAATGAGGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAAAACTGCAGAGATGTTGTGTTGCCAAACTGTGGCCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGAGTCCGAGGTCGCGTTCCTGTCCCTTCTGCCGTAACTGTCTAAATAGGTTGAGCGCCAGGGACCTGTGGGTTCTTACAAGCGACACTGACATTGTCGACTCGGAAACTCTTACCAAGGAAAATCTAATACATTTCTACCTTTATATCGAAAGCCTGCCACTGTTTCAACCAGATGTGAGTGTCGCAGTGGAACAGTTGATATCAGTGATGGCTGGTCTTGCGCTCGGACAATCTCAGGACACTGAGACATCCTTAGGAGTGCTTGTTCTACAGAATCCTGATGCATTCTGA

Protein sequence

MDGFQLHRSSSKFLGPFPRTLVQVCRCTSMDTNRWRRHEKEKPPSRSSMVCTSLLTFTFSRDKQIKFINNETMAAVIYPSLRQLRSGHLKSKEETSSRKRIEDQKGISNEDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSVAVEQLISVMAGLALGQSQDTETSLGVLVLQNPDAF
Homology
[Close]
BLAST of CmaCh04G018070 vs. Swiss-Prot
Match: RN141_RAT (RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 

Query: 110 EDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWV 169
           + L  +EEC ICM+   D++LP C HS C  C   WS R R+CP CR  L    A + WV
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWV 205

Query: 170 LT 172
           ++
Sbjct: 207 VS 205

[Close]
BLAST of CmaCh04G018070 vs. Swiss-Prot
Match: RN141_PONAB (RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 

Query: 110 EDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWV 169
           + L  +EEC ICM+   D++LP C HS C  C   WS R R+CP CR  L    A + WV
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWV 205

Query: 170 LT 172
           ++
Sbjct: 207 VS 205

[Close]
BLAST of CmaCh04G018070 vs. Swiss-Prot
Match: RN141_BOVIN (RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 

Query: 110 EDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWV 169
           + L  +EEC ICM+   D++LP C HS C  C   WS R R+CP CR  L    A + WV
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWV 205

Query: 170 LT 172
           ++
Sbjct: 207 VS 205

[Close]
BLAST of CmaCh04G018070 vs. Swiss-Prot
Match: RN141_CANLF (RING finger protein 141 OS=Canis lupus familiaris GN=RNF141 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 

Query: 110 EDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWV 169
           + L  +EEC ICM+   D++LP C HS C  C   WS R R+CP CR  L    A + WV
Sbjct: 148 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWV 206

Query: 170 LT 172
           ++
Sbjct: 208 VS 206

[Close]
BLAST of CmaCh04G018070 vs. Swiss-Prot
Match: RN141_MOUSE (RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 

Query: 110 EDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWV 169
           + L  +EEC ICM+   D++LP C HS C  C   WS R R+CP CR  L    A + WV
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWV 205

Query: 170 LT 172
           ++
Sbjct: 207 VS 205

[Close]
BLAST of CmaCh04G018070 vs. TrEMBL
Match: A0A0A0KQ18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591730 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.2e-60
Identity = 109/134 (81.34%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSGHLKSKEETSSRKRIEDQKGISNEDLQRDEECGICMENCRDVVLPNCG 134
           AVIYPSLRQL+SG ++SKEETSSRK  ED++ +SNEDLQRDEECGICMENCRDVVLPNCG
Sbjct: 75  AVIYPSLRQLQSGRVESKEETSSRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNCG 134

Query: 135 HSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYI 194
           HSMCLSCF+DW+ RSRSCPFCRNCLNRLS RDLW+LTSDT+I+DSETL KENL+HFYLY 
Sbjct: 135 HSMCLSCFKDWNARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYT 194

Query: 195 ESLPLFQPDVSVAV 209
           ESLPLFQPD+++ +
Sbjct: 195 ESLPLFQPDMNIFI 208

[Close]
BLAST of CmaCh04G018070 vs. TrEMBL
Match: A0A061EEU1_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010696 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 80/136 (58.82%), Postives = 101/136 (74.26%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSGHLKSKE-------ETSSRKRIEDQKGISNEDLQRDEECGICMENCRD 134
           AVIYP LRQL    +K ++       E  SRKR+ED+K +SN+DL+RD+ECGICMENC  
Sbjct: 105 AVIYPLLRQLGDEFIKLEDNKKNGCTEVLSRKRVEDRKRVSNKDLERDDECGICMENCTK 164

Query: 135 VVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENL 194
           +VLPNCGH++C+SCF DW+ RS+SCPFCR  L R+S++DLWVLTS  DI+D  TL KENL
Sbjct: 165 MVLPNCGHALCISCFHDWNVRSQSCPFCRGSLKRVSSKDLWVLTSGNDIIDMVTLAKENL 224

Query: 195 IHFYLYIESLPLFQPD 204
              YLY+E LP   P+
Sbjct: 225 RRLYLYMEKLPFVMPE 240

[Close]
BLAST of CmaCh04G018070 vs. TrEMBL
Match: V4VFV0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 80/137 (58.39%), Postives = 104/137 (75.91%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSGHLKSKE--------ETSSRKRIEDQKGISNEDLQRDEECGICMENCR 134
           A+IYPSLRQL S   + ++        E SSRKR+E+++ +S++DL R++ECGICMENC 
Sbjct: 105 AIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCT 164

Query: 135 DVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKEN 194
            +VLPNCGHS+C++CF DW+ RS+SCPFCR  L R+S+ DLWVL SD DI+D  T+ KEN
Sbjct: 165 KMVLPNCGHSLCVNCFHDWNARSQSCPFCRGSLQRVSSADLWVLISDIDIIDMVTIAKEN 224

Query: 195 LIHFYLYIESLPLFQPD 204
           L  FYLYIE+LPL  PD
Sbjct: 225 LRRFYLYIENLPLIVPD 241

[Close]
BLAST of CmaCh04G018070 vs. TrEMBL
Match: V4SU56_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 80/137 (58.39%), Postives = 104/137 (75.91%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSGHLKSKE--------ETSSRKRIEDQKGISNEDLQRDEECGICMENCR 134
           A+IYPSLRQL S   + ++        E SSRKR+E+++ +S++DL R++ECGICMENC 
Sbjct: 41  AIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCT 100

Query: 135 DVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKEN 194
            +VLPNCGHS+C++CF DW+ RS+SCPFCR  L R+S+ DLWVL SD DI+D  T+ KEN
Sbjct: 101 KMVLPNCGHSLCVNCFHDWNARSQSCPFCRGSLQRVSSADLWVLISDIDIIDMVTIAKEN 160

Query: 195 LIHFYLYIESLPLFQPD 204
           L  FYLYIE+LPL  PD
Sbjct: 161 LRRFYLYIENLPLIVPD 177

[Close]
BLAST of CmaCh04G018070 vs. TrEMBL
Match: B9HTE4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06280g PE=4 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 4.3e-38
Identity = 75/136 (55.15%), Postives = 98/136 (72.06%), Query Frame = 1 

Query: 75  AVIYPSLRQLRS-------GHLKSKEETSSRKRIEDQKGISNEDLQRDEECGICMENCRD 134
           A+IYPSLRQL          H +S  +  SRKR+EDQ+ +S  D +RDEECGICMEN   
Sbjct: 105 AIIYPSLRQLEGEFIEVEDNHKRSSTDVLSRKRMEDQRKLSESDFERDEECGICMENSAK 164

Query: 135 VVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENL 194
           +VLPNCGHS+C+SCF DW+ RS+SCPFCR  L R+S  DLWVL S+ D++D+  L +EN+
Sbjct: 165 MVLPNCGHSLCISCFHDWNVRSQSCPFCRGSLKRMSCTDLWVLISNDDVIDTVALAEENI 224

Query: 195 IHFYLYIESLPLFQPD 204
            HFYLY+++LP   P+
Sbjct: 225 RHFYLYMDNLPFLVPE 240

[Close]
BLAST of CmaCh04G018070 vs. TAIR10
Match: AT1G24440.1 (AT1G24440.1 RING/U-box superfamily protein)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-31
Identity = 63/143 (44.06%), Postives = 93/143 (65.03%), Query Frame = 1 

Query: 76  VIYPSLRQLRSGHLKSKEE----------TSSRKRIEDQKGISNEDLQRDEECGICMENC 135
           VI PSL +L        +E          T  +  IE  + +++ DL+R++ECGIC+E C
Sbjct: 103 VILPSLERLHINFADLPDESLWYPNPKAITKKQYDIEGSRYMNSIDLEREDECGICLEPC 162

Query: 136 RDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKE 195
             +VLPNC H+MC+ C+++W+ +S SCPFCR  + R+++ DLWVLT D D+VD ET+TKE
Sbjct: 163 TKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKE 222

Query: 196 NLIHFYLYIESLPLFQPDVSVAV 209
           +L+ FYL+I SLP   P+ +  V
Sbjct: 223 DLLRFYLHINSLPKDYPEAAFLV 245

[Close]
BLAST of CmaCh04G018070 vs. TAIR10
Match: AT1G13195.1 (AT1G13195.1 RING/U-box superfamily protein)

HSP 1 Score: 128.6 bits (322), Expect = 5.0e-30
Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 1 

Query: 76  VIYPSLRQLRSGHLKSKEETS--------SRKRIEDQKG--ISNEDLQRDEECGICMENC 135
           VI PSL+ L S +L   E T         S+K  ++ +    SN  L+R+EECGIC+E C
Sbjct: 111 VILPSLQLLHS-NLDELETTDIGFDLKRLSKKITKEARSSRFSNAGLEREEECGICLETC 170

Query: 136 RDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKE 195
             +VLPNC HSMC+ C+++W+ +S+SCPFCR  + R+++ DLWVL  D D+VD+ T ++E
Sbjct: 171 TKMVLPNCCHSMCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASRE 230

Query: 196 NLIHFYLYIESLPLFQPDVSVAV 209
           +L  FYLYI SLP   P+    V
Sbjct: 231 DLFRFYLYINSLPKDYPEALFVV 252

[Close]
BLAST of CmaCh04G018070 vs. TAIR10
Match: AT5G58787.1 (AT5G58787.1 RING/U-box superfamily protein)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-29
Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSG-----HLKSKEETSSRKRIEDQKGISNEDLQRDEECGICMENCRDVV 134
           AVI PSL QL+ G       K KE    R R +D+  +S  +++R+EECGICME    VV
Sbjct: 96  AVILPSLSQLQRGVTDIDDSKQKEVCKMRYRKKDESEMSEIEIEREEECGICMEMNSKVV 155

Query: 135 LPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIH 194
           LPNC HS+C+ C++DW  RS+SCPFCR+ L R+ + DLW+     D V+   + +EN   
Sbjct: 156 LPNCTHSLCIKCYRDWRGRSQSCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKR 215

Query: 195 FYLYIESLPLFQPD 204
            ++YIE LPL  PD
Sbjct: 216 LFMYIEKLPLVVPD 229

[Close]
BLAST of CmaCh04G018070 vs. TAIR10
Match: AT3G47160.2 (AT3G47160.2 RING/U-box superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-29
Identity = 65/137 (47.45%), Postives = 87/137 (63.50%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSG-----HLKSKEETSSRKRIEDQKG---ISNEDLQRDEECGICMENCR 134
           AVI+PSL QL  G       K KE    R R +D+     +S  D++R+EECGICME   
Sbjct: 108 AVIFPSLLQLERGITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNN 167

Query: 135 DVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKEN 194
            VVLPNC HS+C+ C++DW  RS SCPFCR+ L R+++ DLW+L   +D V+  T+ +EN
Sbjct: 168 MVVLPNCTHSLCIKCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIEREN 227

Query: 195 LIHFYLYIESLPLFQPD 204
               ++YIE LPL  PD
Sbjct: 228 KKRLFVYIEKLPLVVPD 244

[Close]
BLAST of CmaCh04G018070 vs. TAIR10
Match: AT5G01520.1 (AT5G01520.1 RING/U-box superfamily protein)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 63/136 (46.32%), Postives = 85/136 (62.50%), Query Frame = 1 

Query: 76  VIYPSLRQLRSG-----HLKSKEETSSRKRIEDQ--KGISNE-DLQRDEECGICMENCRD 135
           V++PSL QL  G       K KE    R R +D+  KG  +E DL+R+EECGIC+E    
Sbjct: 96  VLFPSLLQLHGGITDVEERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNK 155

Query: 136 VVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENL 195
           VVLP C HSMC++C+++W  RS+SCPFCR  L R+++ DLW+ T   +I D   + KENL
Sbjct: 156 VVLPTCNHSMCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENL 215

Query: 196 IHFYLYIESLPLFQPD 204
               +YI+ LPL   D
Sbjct: 216 KRLLIYIDKLPLVTSD 231

[Close]
BLAST of CmaCh04G018070 vs. NCBI nr
Match: gi|659090608|ref|XP_008446105.1| (PREDICTED: uncharacterized protein LOC103488931 isoform X1 [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 4.3e-63
Identity = 119/154 (77.27%), Postives = 135/154 (87.66%), Query Frame = 1 

Query: 57  FTFSRDKQI--KFINNETMAAVIYPSLRQLRSGHLKSKEETSSRKRIEDQKGISNEDLQR 116
           F FSR +QI  K    ETMAAVIYPSLRQL+SG + SKEETS RK  ED++ +SNEDLQR
Sbjct: 112 FFFSRIEQIGSKLFTIETMAAVIYPSLRQLQSGRVDSKEETSPRKITEDEQKLSNEDLQR 171

Query: 117 DEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDT 176
           DEECGICMENCRDVVLPNCGHSMCL+CF+DWS RSRSCPFCRNCLNRLS RDLW+LTSDT
Sbjct: 172 DEECGICMENCRDVVLPNCGHSMCLNCFKDWSARSRSCPFCRNCLNRLSTRDLWILTSDT 231

Query: 177 DIVDSETLTKENLIHFYLYIESLPLFQPDVSVAV 209
           +I+DSETL KENL+HFYLY ESLPLFQPD+++ +
Sbjct: 232 EIIDSETLAKENLLHFYLYTESLPLFQPDMNIFI 265

[Close]
BLAST of CmaCh04G018070 vs. NCBI nr
Match: gi|659090612|ref|XP_008446107.1| (PREDICTED: uncharacterized protein LOC103488931 isoform X3 [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 4.3e-63
Identity = 119/154 (77.27%), Postives = 135/154 (87.66%), Query Frame = 1 

Query: 57  FTFSRDKQI--KFINNETMAAVIYPSLRQLRSGHLKSKEETSSRKRIEDQKGISNEDLQR 116
           F FSR +QI  K    ETMAAVIYPSLRQL+SG + SKEETS RK  ED++ +SNEDLQR
Sbjct: 82  FFFSRIEQIGSKLFTIETMAAVIYPSLRQLQSGRVDSKEETSPRKITEDEQKLSNEDLQR 141

Query: 117 DEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDT 176
           DEECGICMENCRDVVLPNCGHSMCL+CF+DWS RSRSCPFCRNCLNRLS RDLW+LTSDT
Sbjct: 142 DEECGICMENCRDVVLPNCGHSMCLNCFKDWSARSRSCPFCRNCLNRLSTRDLWILTSDT 201

Query: 177 DIVDSETLTKENLIHFYLYIESLPLFQPDVSVAV 209
           +I+DSETL KENL+HFYLY ESLPLFQPD+++ +
Sbjct: 202 EIIDSETLAKENLLHFYLYTESLPLFQPDMNIFI 235

[Close]
BLAST of CmaCh04G018070 vs. NCBI nr
Match: gi|449435031|ref|XP_004135299.1| (PREDICTED: peroxisome biogenesis factor 10-like isoform X1 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 7.5e-60
Identity = 109/134 (81.34%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSGHLKSKEETSSRKRIEDQKGISNEDLQRDEECGICMENCRDVVLPNCG 134
           AVIYPSLRQL+SG ++SKEETSSRK  ED++ +SNEDLQRDEECGICMENCRDVVLPNCG
Sbjct: 105 AVIYPSLRQLQSGRVESKEETSSRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNCG 164

Query: 135 HSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYI 194
           HSMCLSCF+DW+ RSRSCPFCRNCLNRLS RDLW+LTSDT+I+DSETL KENL+HFYLY 
Sbjct: 165 HSMCLSCFKDWNARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYT 224

Query: 195 ESLPLFQPDVSVAV 209
           ESLPLFQPD+++ +
Sbjct: 225 ESLPLFQPDMNIFI 238

[Close]
BLAST of CmaCh04G018070 vs. NCBI nr
Match: gi|778704758|ref|XP_011655587.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X2 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 7.5e-60
Identity = 109/134 (81.34%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSGHLKSKEETSSRKRIEDQKGISNEDLQRDEECGICMENCRDVVLPNCG 134
           AVIYPSLRQL+SG ++SKEETSSRK  ED++ +SNEDLQRDEECGICMENCRDVVLPNCG
Sbjct: 75  AVIYPSLRQLQSGRVESKEETSSRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNCG 134

Query: 135 HSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYI 194
           HSMCLSCF+DW+ RSRSCPFCRNCLNRLS RDLW+LTSDT+I+DSETL KENL+HFYLY 
Sbjct: 135 HSMCLSCFKDWNARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYT 194

Query: 195 ESLPLFQPDVSVAV 209
           ESLPLFQPD+++ +
Sbjct: 195 ESLPLFQPDMNIFI 208

[Close]
BLAST of CmaCh04G018070 vs. NCBI nr
Match: gi|659090614|ref|XP_008446108.1| (PREDICTED: peroxisome biogenesis factor 10-like isoform X4 [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 4.9e-59
Identity = 108/134 (80.60%), Postives = 123/134 (91.79%), Query Frame = 1 

Query: 75  AVIYPSLRQLRSGHLKSKEETSSRKRIEDQKGISNEDLQRDEECGICMENCRDVVLPNCG 134
           AVIYPSLRQL+SG + SKEETS RK  ED++ +SNEDLQRDEECGICMENCRDVVLPNCG
Sbjct: 75  AVIYPSLRQLQSGRVDSKEETSPRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNCG 134

Query: 135 HSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYI 194
           HSMCL+CF+DWS RSRSCPFCRNCLNRLS RDLW+LTSDT+I+DSETL KENL+HFYLY 
Sbjct: 135 HSMCLNCFKDWSARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYT 194

Query: 195 ESLPLFQPDVSVAV 209
           ESLPLFQPD+++ +
Sbjct: 195 ESLPLFQPDMNIFI 208

The following BLAST results are available for this feature:
BLAST of CmaCh04G018070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN141_RAT6.7e-0843.55RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1[more]
RN141_PONAB6.7e-0843.55RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1[more]
RN141_BOVIN6.7e-0843.55RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1[more]
RN141_CANLF6.7e-0843.55RING finger protein 141 OS=Canis lupus familiaris GN=RNF141 PE=2 SV=1[more]
RN141_MOUSE6.7e-0843.55RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=1 SV=2[more]
BLAST of CmaCh04G018070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ18_CUCSA5.2e-6081.34Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591730 PE=4 SV=1[more]
A0A061EEU1_THECC1.0e-3958.82RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010696 PE=4 SV=1[more]
V4VFV0_9ROSI1.3e-3958.39Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1[more]
V4SU56_9ROSI1.3e-3958.39Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1[more]
B9HTE4_POPTR4.3e-3855.15Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06280g PE=4 SV=2[more]
BLAST of CmaCh04G018070 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24440.11.6e-3144.06 RING/U-box superfamily protein[more]
AT1G13195.15.0e-3045.45 RING/U-box superfamily protein[more]
AT5G58787.11.9e-2946.27 RING/U-box superfamily protein[more]
AT3G47160.24.3e-2947.45 RING/U-box superfamily protein[more]
AT5G01520.11.1e-2746.32 RING/U-box superfamily protein[more]
BLAST of CmaCh04G018070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090608|ref|XP_008446105.1|4.3e-6377.27PREDICTED: uncharacterized protein LOC103488931 isoform X1 [Cucumis melo][more]
gi|659090612|ref|XP_008446107.1|4.3e-6377.27PREDICTED: uncharacterized protein LOC103488931 isoform X3 [Cucumis melo][more]
gi|449435031|ref|XP_004135299.1|7.5e-6081.34PREDICTED: peroxisome biogenesis factor 10-like isoform X1 [Cucumis sativus][more]
gi|778704758|ref|XP_011655587.1|7.5e-6081.34PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X2 [Cucumis sativus][more]
gi|659090614|ref|XP_008446108.1|4.9e-5980.60PREDICTED: peroxisome biogenesis factor 10-like isoform X4 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001594Palmitoyltrfase_DHHC
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G018070.1CmaCh04G018070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001594Zinc finger, DHHC-type, palmitoyltransferasePROFILEPS50216ZF_DHHCcoord: 136..169
score: 8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 118..155
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 118..156
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 102..160
score: 1.0
NoneNo IPR availablePANTHERPTHR15315RING FINGER PROTEIN 41, 151coord: 75..208
score: 1.8
NoneNo IPR availablePANTHERPTHR15315:SF22SUBFAMILY NOT NAMEDcoord: 75..208
score: 1.8
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 115..157
score: 7.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 108..160
score: 5.11

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G018070Cucsa.075380Cucumber (Gy14) v1cgycmaB0126
CmaCh04G018070Cla009997Watermelon (97103) v1cmawmB700
CmaCh04G018070Csa5G591730Cucumber (Chinese Long) v2cmacuB749
CmaCh04G018070ClCG05G026220Watermelon (Charleston Gray)cmawcgB656
CmaCh04G018070CSPI05G21750Wild cucumber (PI 183967)cmacpiB758
CmaCh04G018070CmoCh18G007120Cucurbita moschata (Rifu)cmacmoB711
CmaCh04G018070CmoCh05G000690Cucurbita moschata (Rifu)cmacmoB747
CmaCh04G018070Lsi08G016220Bottle gourd (USVL1VR-Ls)cmalsiB704
CmaCh04G018070Cp4.1LG01g15820Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G018070Cp4.1LG11g00520Cucurbita pepo (Zucchini)cmacpeB704
CmaCh04G018070Cp4.1LG07g00540Cucurbita pepo (Zucchini)cmacpeB756
CmaCh04G018070MELO3C010712.2Melon (DHL92) v3.6.1cmamedB764
CmaCh04G018070CsaV3_2G025150Cucumber (Chinese Long) v3cmacucB0823
CmaCh04G018070CsaV3_5G030620Cucumber (Chinese Long) v3cmacucB0886
CmaCh04G018070Cla97C08G161160Watermelon (97103) v2cmawmbB789
CmaCh04G018070Bhi04G000505Wax gourdcmawgoB0872
CmaCh04G018070CsGy5G021260Cucumber (Gy14) v2cgybcmaB675
CmaCh04G018070Carg20474Silver-seed gourdcarcmaB0884
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G018070Watermelon (97103) v2cmawmbB759
CmaCh04G018070Wax gourdcmawgoB0891
CmaCh04G018070Cucurbita maxima (Rimu)cmacmaB189
CmaCh04G018070Cucurbita maxima (Rimu)cmacmaB404
CmaCh04G018070Cucurbita maxima (Rimu)cmacmaB540
CmaCh04G018070Cucumber (Gy14) v1cgycmaB1093
CmaCh04G018070Cucurbita moschata (Rifu)cmacmoB680
CmaCh04G018070Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G018070Wild cucumber (PI 183967)cmacpiB700
CmaCh04G018070Cucumber (Chinese Long) v2cmacuB692
CmaCh04G018070Melon (DHL92) v3.5.1cmameB641
CmaCh04G018070Melon (DHL92) v3.5.1cmameB681
CmaCh04G018070Watermelon (Charleston Gray)cmawcgB681
CmaCh04G018070Watermelon (97103) v1cmawmB670
CmaCh04G018070Cucurbita pepo (Zucchini)cmacpeB694
CmaCh04G018070Bottle gourd (USVL1VR-Ls)cmalsiB670
CmaCh04G018070Cucumber (Gy14) v2cgybcmaB244
CmaCh04G018070Melon (DHL92) v3.6.1cmamedB727
CmaCh04G018070Silver-seed gourdcarcmaB0339
CmaCh04G018070Silver-seed gourdcarcmaB0706
CmaCh04G018070Silver-seed gourdcarcmaB0971