CmaCh04G011490 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G011490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNodulin MtN21/EamA-like transporter family protein
LocationCma_Chr04 : 5893048 .. 5893602 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGATGCAGAACACTCGCCCTCCTCCTAGCCAGAGATTTCAATGCTCTTCATTTCTGGCTTCTTCACCTCCATCTTCGGCACTCTCACCGTCAGCACTCCATTCTCCATGCTCGCCTTCACCTCTCCTGCTTTTGCGTTCTCCGGCACTCGAACCTCCTCAGGAACTTCCCACTGCTTCGTTCAATTCTATGCCACTTGTCGTTTTTCTCCTCCTGTTCCTTGCTCCTCTCTCCACTGATCTGCAGCACTCCCCCCTCTTCAACTTCAACTTTCACCTCCTCCTTTTTTATCCCCGGAAGATCCGCCTTGAAGATGTGGGCTTCCGGGGTCTCCTTCCAGTCGATGCGGGTGTTCGCAAAAGCAGAGGTCTCACGAGCAGAGGAGGGGACGTTGGCCAGTGAGCTCGAAAATGGGAAGCCTTCGAAAGGATCCCAAACGTCCAAGGAGAAGGGATCGAAGACGTTACTCCGTCGCCCACCGAAAATGCTTGGAATCAGCGACATCTTTGTTGGTGAATTAGATAGTAGAATTGCTGAAACTGATCGTTGA

mRNA sequence

ATGGGCAGATGCAGAACACTCGCCCTCCTCCTAGCCAGAGATTTCAATGCTCTTCATTTCTGGCTTCTTCACCTCCATCTTCGGCACTCTCACCGTCAGCACTCCATTCTCCATGCTCGCCTTCACCTCTCCTGCTTTTGCGTTCTCCGGCACTCGAACCTCCTCAGGAACTTCCCACTGCTTCGTTCAATTCTATGCCACTTGTCGTTTTTCTCCTCCTGTTCCTTGCTCCTCTCTCCACTGATCTGCAGCACTCCCCCCTCTTCAACTTCAACTTTCACCTCCTCCTTTTTTATCCCCGGAAGATCCGCCTTGAAGATGTGGGCTTCCGGGGTCTCCTTCCAGTCGATGCGGGTGTTCGCAAAAGCAGAGGTCTCACGAGCAGAGGAGGGGACGTTGGCCAGTGAGCTCGAAAATGGGAAGCCTTCGAAAGGATCCCAAACGTCCAAGGAGAAGGGATCGAAGACGTTACTCCGTCGCCCACCGAAAATGCTTGGAATCAGCGACATCTTTGTTGGTGAATTAGATAGTAGAATTGCTGAAACTGATCGTTGA

Coding sequence (CDS)

ATGGGCAGATGCAGAACACTCGCCCTCCTCCTAGCCAGAGATTTCAATGCTCTTCATTTCTGGCTTCTTCACCTCCATCTTCGGCACTCTCACCGTCAGCACTCCATTCTCCATGCTCGCCTTCACCTCTCCTGCTTTTGCGTTCTCCGGCACTCGAACCTCCTCAGGAACTTCCCACTGCTTCGTTCAATTCTATGCCACTTGTCGTTTTTCTCCTCCTGTTCCTTGCTCCTCTCTCCACTGATCTGCAGCACTCCCCCCTCTTCAACTTCAACTTTCACCTCCTCCTTTTTTATCCCCGGAAGATCCGCCTTGAAGATGTGGGCTTCCGGGGTCTCCTTCCAGTCGATGCGGGTGTTCGCAAAAGCAGAGGTCTCACGAGCAGAGGAGGGGACGTTGGCCAGTGAGCTCGAAAATGGGAAGCCTTCGAAAGGATCCCAAACGTCCAAGGAGAAGGGATCGAAGACGTTACTCCGTCGCCCACCGAAAATGCTTGGAATCAGCGACATCTTTGTTGGTGAATTAGATAGTAGAATTGCTGAAACTGATCGTTGA

Protein sequence

MGRCRTLALLLARDFNALHFWLLHLHLRHSHRQHSILHARLHLSCFCVLRHSNLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGVSFQSMRVFAKAEVSRAEEGTLASELENGKPSKGSQTSKEKGSKTLLRRPPKMLGISDIFVGELDSRIAETDR
Homology
[Close]
BLAST of CmaCh04G011490 vs. TrEMBL
Match: A0A0A0KSC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-43
Identity = 100/114 (87.72%), Postives = 100/114 (87.72%), Query Frame = 1 

Query: 53  NLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGV 112
           NLL NFP LRSILCHLSFFSSCSLLLSPLIC T PSSTST TSSF IPGRSALKMWA GV
Sbjct: 40  NLLMNFPQLRSILCHLSFFSSCSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGV 99

Query: 113 SFQSMRVFAKAEVSRAEEGTLASELENGKPSKGSQTSKEKGSKTLLRRPPKMLG 167
           SFQSMRV AKAEVSRAEEG LA E E GKPSKGSQ S EKGSKTLLRRPPKMLG
Sbjct: 100 SFQSMRVLAKAEVSRAEEGALAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLG 153

[Close]
BLAST of CmaCh04G011490 vs. TrEMBL
Match: A0A103YMN4_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_009654 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.9e-28
Identity = 83/133 (62.41%), Postives = 89/133 (66.92%), Query Frame = 1 

Query: 44  SCFCVLRHSNLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRS 103
           S F    + NLL NFPLLRS LCH+SF SS S  LSPLIC    SSTSTFTSSF IPGRS
Sbjct: 177 SNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLSPLICKILSSSTSTFTSSFLIPGRS 236

Query: 104 ALKMWASGVSFQSMRVFAKAEVSRAEEGTLASELENGKPSKGSQTSKEKGSKTLLRRPPK 163
           ALK  ASGVSFQS RVF KAEVS  E      E+  GK   GSQ S   GSK L RRPPK
Sbjct: 237 ALKTCASGVSFQSTRVFTKAEVSLQESD--PDEVGKGKSLNGSQISMANGSKMLFRRPPK 296

Query: 164 MLGISDIFVGELD 177
            LG+ DIF  ++D
Sbjct: 297 KLGMIDIFCLQMD 307

[Close]
BLAST of CmaCh04G011490 vs. TrEMBL
Match: I1P9U5_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.4e-25
Identity = 79/124 (63.71%), Postives = 86/124 (69.35%), Query Frame = 1 

Query: 53  NLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGV 112
           NL RN PLLRS  CHLS FSSCSLL SPLIC   PSSTST TSSFF PG SAL   ASGV
Sbjct: 648 NLRRNLPLLRSTRCHLSVFSSCSLLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCASGV 707

Query: 113 SFQSMRVFAKA----EVSRAEEGTLASEL----ENGKPSKGSQTSKEKGSKTLLRRPPKM 169
           SFQSMR  AKA    EV R ++G +   L      GKPSKGSQ S+EKGS TLLRR   +
Sbjct: 708 SFQSMRAPAKAAVSEEVPRGKDGKMLPLLLLPEPKGKPSKGSQRSREKGSNTLLRRIIDI 767

[Close]
BLAST of CmaCh04G011490 vs. TrEMBL
Match: A0A0D9Z549_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-24
Identity = 78/124 (62.90%), Postives = 85/124 (68.55%), Query Frame = 1 

Query: 53  NLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGV 112
           NL RN PLLRS  CHLS FSSCSLL SPLIC   PSSTST TSSFF PG SAL   ASGV
Sbjct: 38  NLRRNLPLLRSTRCHLSVFSSCSLLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCASGV 97

Query: 113 SFQSMRVFAKA----EVSRAEEGTLASEL----ENGKPSKGSQTSKEKGSKTLLRRPPKM 169
           SFQSMR  AKA    EV R ++G +   L      GKPSKGSQ S+EKGS  LLRR   +
Sbjct: 98  SFQSMRAPAKAAVSEEVPRGKDGKMLPLLLLPEPKGKPSKGSQRSREKGSNMLLRRIIDI 157

[Close]
BLAST of CmaCh04G011490 vs. TrEMBL
Match: A0A0A8YU32_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.7e-23
Identity = 77/118 (65.25%), Postives = 82/118 (69.49%), Query Frame = 1 

Query: 53  NLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGV 112
           N  RN PLLRS  CHLSFFSSCSLL SPLI  T PSS STFTSSFF PG SALK  ASGV
Sbjct: 38  NRRRNLPLLRSTRCHLSFFSSCSLLRSPLIWRTLPSSISTFTSSFFSPGTSALKTCASGV 97

Query: 113 SFQSMRVFAKAEVSRAEE--GTLASELENGKPSKGSQTSKEKGSKTLLRRPPKMLGIS 169
           SFQSMR  AKA VS  EE  G     L+ GKP KGSQ S++KGS  L RR   ++G S
Sbjct: 98  SFQSMRAPAKAAVSEPEEVRGNRLPLLK-GKPWKGSQRSRDKGSNALPRRISDIVGWS 154

[Close]
BLAST of CmaCh04G011490 vs. NCBI nr
Match: gi|700195444|gb|KGN50621.1| (hypothetical protein Csa_5G197120 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 100/114 (87.72%), Postives = 100/114 (87.72%), Query Frame = 1 

Query: 53  NLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGV 112
           NLL NFP LRSILCHLSFFSSCSLLLSPLIC T PSSTST TSSF IPGRSALKMWA GV
Sbjct: 40  NLLMNFPQLRSILCHLSFFSSCSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGV 99

Query: 113 SFQSMRVFAKAEVSRAEEGTLASELENGKPSKGSQTSKEKGSKTLLRRPPKMLG 167
           SFQSMRV AKAEVSRAEEG LA E E GKPSKGSQ S EKGSKTLLRRPPKMLG
Sbjct: 100 SFQSMRVLAKAEVSRAEEGALAKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLG 153

[Close]
BLAST of CmaCh04G011490 vs. NCBI nr
Match: gi|976929048|gb|KVI11914.1| (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-28
Identity = 83/133 (62.41%), Postives = 89/133 (66.92%), Query Frame = 1 

Query: 44  SCFCVLRHSNLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRS 103
           S F    + NLL NFPLLRS LCH+SF SS S  LSPLIC    SSTSTFTSSF IPGRS
Sbjct: 177 SNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLSPLICKILSSSTSTFTSSFLIPGRS 236

Query: 104 ALKMWASGVSFQSMRVFAKAEVSRAEEGTLASELENGKPSKGSQTSKEKGSKTLLRRPPK 163
           ALK  ASGVSFQS RVF KAEVS  E      E+  GK   GSQ S   GSK L RRPPK
Sbjct: 237 ALKTCASGVSFQSTRVFTKAEVSLQESD--PDEVGKGKSLNGSQISMANGSKMLFRRPPK 296

Query: 164 MLGISDIFVGELD 177
            LG+ DIF  ++D
Sbjct: 297 KLGMIDIFCLQMD 307

[Close]
BLAST of CmaCh04G011490 vs. NCBI nr
Match: gi|113548134|dbj|BAF11577.1| (Os03g0267100 [Oryza sativa Japonica Group])

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-21
Identity = 72/119 (60.50%), Postives = 74/119 (62.18%), Query Frame = 1 

Query: 53  NLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGV 112
           NL RN PLLRS  CHLS FSSCSLL SPLIC   PSSTST TSSFF PG SAL    SGV
Sbjct: 38  NLRRNLPLLRSTRCHLSDFSSCSLLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCTSGV 97

Query: 113 SFQSMRVFAKAEVSRAEEG------TLASELENGKPSKGSQTSKEKGSKTLLRRPPKML 166
           SFQSMR  AKA  S    G       L      GKPS GSQ S+EKGS  L RR   M+
Sbjct: 98  SFQSMRAPAKAAASELARGKRLPLLLLLPPEPKGKPSTGSQRSREKGSNALPRRISDMV 156

[Close]
BLAST of CmaCh04G011490 vs. NCBI nr
Match: gi|937894281|dbj|BAS70261.1| (Os01g0136050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 73/116 (62.93%), Postives = 78/116 (67.24%), Query Frame = 1 

Query: 53  NLLRNFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGV 112
           N   N PLLRS  CHLSF SS SLL  PLI ST PSSTSTFTSSF  PGRSALK   SGV
Sbjct: 59  NRRMNCPLLRSTRCHLSFLSSFSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGV 118

Query: 113 SFQSMRVFAKAEVSRAEEGTLASELENGKPSKGSQTSKEKGSKTLLRRPPKMLGIS 169
           SFQS R  AKA VSR+E   +A   E   PSKGSQ S  KGS TLLR    ++G+S
Sbjct: 119 SFQSTRALAKAAVSRSE---VAGTRERKTPSKGSQKS-AKGSNTLLRLTSDIVGLS 170

[Close]
BLAST of CmaCh04G011490 vs. NCBI nr
Match: gi|223949877|gb|ACN29022.1| (unknown [Zea mays])

HSP 1 Score: 99.0 bits (245), Expect = 9.3e-18
Identity = 67/108 (62.04%), Postives = 73/108 (67.59%), Query Frame = 1 

Query: 57  NFPLLRSILCHLSFFSSCSLLLSPLICSTPPSSTSTFTSSFFIPGRSALKMWASGVSFQS 116
           N+PLLRS  CHLS  SS SLL  PL+ ST PSSTSTFTSSFF PGRSAL   ASGVSFQS
Sbjct: 42  NWPLLRSTRCHLSPLSSFSLLRCPLMSSTLPSSTSTFTSSFFTPGRSALNTCASGVSFQS 101

Query: 117 MRVFAKAEVSRA-----EEGTLASELENGKPSKGSQTSKEKGSKTLLR 160
           MR  AKA VS A     ++GT    +E    SKGS+ S E GS TL R
Sbjct: 102 MRALAKAAVSEAAAADDDDGT----MERNTLSKGSKRSTENGSNTLPR 145

The following BLAST results are available for this feature:
BLAST of CmaCh04G011490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G011490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSC0_CUCSA1.5e-4387.72Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1[more]
A0A103YMN4_CYNCS6.9e-2862.41Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
I1P9U5_ORYGL5.4e-2563.71Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1[more]
A0A0D9Z549_9ORYZ2.7e-2462.90Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1[more]
A0A0A8YU32_ARUDO8.7e-2365.25Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CmaCh04G011490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G011490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195444|gb|KGN50621.1|2.2e-4387.72hypothetical protein Csa_5G197120 [Cucumis sativus][more]
gi|976929048|gb|KVI11914.1|9.9e-2862.41hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus][more]
gi|113548134|dbj|BAF11577.1|6.8e-2160.50Os03g0267100 [Oryza sativa Japonica Group][more]
gi|937894281|dbj|BAS70261.1|2.0e-2062.93Os01g0136050, partial [Oryza sativa Japonica Group][more]
gi|223949877|gb|ACN29022.1|9.3e-1862.04unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G011490.1CmaCh04G011490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G011490CmoCh04G012130Cucurbita moschata (Rifu)cmacmoB728
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G011490Cucurbita pepo (Zucchini)cmacpeB729
CmaCh04G011490Cucurbita pepo (Zucchini)cmacpeB708
CmaCh04G011490Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G011490Cucurbita pepo (Zucchini)cmacpeB723
CmaCh04G011490Cucurbita pepo (Zucchini)cmacpeB757
CmaCh04G011490Bottle gourd (USVL1VR-Ls)cmalsiB642
CmaCh04G011490Bottle gourd (USVL1VR-Ls)cmalsiB659
CmaCh04G011490Bottle gourd (USVL1VR-Ls)cmalsiB676
CmaCh04G011490Cucumber (Gy14) v2cgybcmaB412
CmaCh04G011490Cucumber (Gy14) v2cgybcmaB556
CmaCh04G011490Cucumber (Gy14) v2cgybcmaB673
CmaCh04G011490Cucumber (Gy14) v2cgybcmaB840
CmaCh04G011490Melon (DHL92) v3.6.1cmamedB741
CmaCh04G011490Melon (DHL92) v3.6.1cmamedB766
CmaCh04G011490Melon (DHL92) v3.6.1cmamedB803
CmaCh04G011490Silver-seed gourdcarcmaB0034
CmaCh04G011490Silver-seed gourdcarcmaB0116
CmaCh04G011490Silver-seed gourdcarcmaB0375
CmaCh04G011490Silver-seed gourdcarcmaB0948
CmaCh04G011490Cucumber (Chinese Long) v3cmacucB0884
CmaCh04G011490Cucumber (Chinese Long) v3cmacucB0912
CmaCh04G011490Watermelon (97103) v2cmawmbB719
CmaCh04G011490Watermelon (97103) v2cmawmbB727
CmaCh04G011490Watermelon (97103) v2cmawmbB754
CmaCh04G011490Watermelon (97103) v2cmawmbB780
CmaCh04G011490Wax gourdcmawgoB0864
CmaCh04G011490Wax gourdcmawgoB0889
CmaCh04G011490Cucurbita maxima (Rimu)cmacmaB272
CmaCh04G011490Cucurbita maxima (Rimu)cmacmaB326
CmaCh04G011490Cucurbita maxima (Rimu)cmacmaB516
CmaCh04G011490Cucurbita maxima (Rimu)cmacmaB531
CmaCh04G011490Cucurbita maxima (Rimu)cmacmaB533
CmaCh04G011490Cucumber (Gy14) v1cgycmaB0375
CmaCh04G011490Cucumber (Gy14) v1cgycmaB0472
CmaCh04G011490Cucurbita moschata (Rifu)cmacmoB695
CmaCh04G011490Cucurbita moschata (Rifu)cmacmoB726
CmaCh04G011490Cucurbita moschata (Rifu)cmacmoB731
CmaCh04G011490Cucurbita moschata (Rifu)cmacmoB734
CmaCh04G011490Wild cucumber (PI 183967)cmacpiB756
CmaCh04G011490Wild cucumber (PI 183967)cmacpiB783
CmaCh04G011490Cucumber (Chinese Long) v2cmacuB690
CmaCh04G011490Cucumber (Chinese Long) v2cmacuB746
CmaCh04G011490Cucumber (Chinese Long) v2cmacuB772
CmaCh04G011490Melon (DHL92) v3.5.1cmameB655
CmaCh04G011490Melon (DHL92) v3.5.1cmameB682
CmaCh04G011490Melon (DHL92) v3.5.1cmameB686
CmaCh04G011490Watermelon (Charleston Gray)cmawcgB624
CmaCh04G011490Watermelon (Charleston Gray)cmawcgB673
CmaCh04G011490Watermelon (97103) v1cmawmB673
CmaCh04G011490Watermelon (97103) v1cmawmB678
CmaCh04G011490Watermelon (97103) v1cmawmB690
CmaCh04G011490Watermelon (97103) v1cmawmB740