CmaCh04G009340 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G009340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSpindle pole body component protein
LocationCma_Chr04 : 4811631 .. 4812560 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGGTTGCCGTGATTCTACGACGGACGACGGAGTAGAATATGGACTGCCGCCGTATTAGTCAATGGTAGTGATTATAAGAGATTTGCTCTTTAAGCTCGCCTCCTTCTTGGCATCGGATCGGAGCTGCTGTTCTCTTTCCGATCACTCTCCTTCTGCCTAGAGACTCGACAGGAGCGGTTTAGTGTCCGATGAAATTCCTTCCCGAGTTCGTTTCTTGCTGCGTGCCGGTGAGCGTGTCGCGCATGGAGAATCCGGAAGCGACGGAGGCTCCGGGAGCCGAGGAGATAAGATCTCTGGCTCCGGTCACCACCAGAATACACCTGCGTAGAAGACGAGGTGCGCCGTATACTTCGGCGGCTAAAATGGCCGGCGATTGGACGCCGTCGCTAGGAGCGATCTCGGAGGATAATGTAGTTCTAGTAGTGATGGAGAGAAAGAAGAGCGAGGATCGGACGGCGGAATCAGAGCGATCTGTGAAGAGGAAGAGCGGATCTCGAAATGGAAAGGCAAGAGGAGTTCACGGACGTAACAACAGCAACGATTTTAGGTACGTACGTATGTCAGTTCGTGAATCTTCGGTATCATTATCGAAATCGTAACGATCTGTGAAATGAAAACGACGTCTGGAAAGAATCTTTTTGTTAATTTTCTCTCTCTCAGGCGAAGTCCGGCGGCCATACCGGTGGTGATTCCGGCGTTTTCTCCAACTCCGTTCTTATTCTGATGCAATTCTGCTTCGATTATCCGATCACTCAGGCTCGTGTAATATATGTGCATATTTGCATAACTCAATTGCATCGTAATAATGATTTGTATAATCAATAAAAAAATTGATTAGAAAAAGGTGAGGTTGAGGAGGAAACTTATCCCTGGAATTGTAGCTTGTTGGTTCAACTGCTCTCTGCAATTTTAAATCTTCCCATTTCTAC

mRNA sequence

CGGGTTGCCGTGATTCTACGACGGACGACGGAGTAGAATATGGACTGCCGCCGTATTAGTCAATGGTAGTGATTATAAGAGATTTGCTCTTTAAGCTCGCCTCCTTCTTGGCATCGGATCGGAGCTGCTGTTCTCTTTCCGATCACTCTCCTTCTGCCTAGAGACTCGACAGGAGCGGTTTAGTGTCCGATGAAATTCCTTCCCGAGTTCGTTTCTTGCTGCGTGCCGGTGAGCGTGTCGCGCATGGAGAATCCGGAAGCGACGGAGGCTCCGGGAGCCGAGGAGATAAGATCTCTGGCTCCGGTCACCACCAGAATACACCTGCGTAGAAGACGAGGTGCGCCGTATACTTCGGCGGCTAAAATGGCCGGCGATTGGACGCCGTCGCTAGGAGCGATCTCGGAGGATAATGTAGTTCTAGTAGTGATGGAGAGAAAGAAGAGCGAGGATCGGACGGCGGAATCAGAGCGATCTGTGAAGAGGAAGAGCGGATCTCGAAATGGAAAGGCAAGAGGAGTTCACGGACGTAACAACAGCAACGATTTTAGGCGAAGTCCGGCGGCCATACCGGTGGTGATTCCGGCGTTTTCTCCAACTCCGTTCTTATTCTGATGCAATTCTGCTTCGATTATCCGATCACTCAGGCTCGTGTAATATATGTGCATATTTGCATAACTCAATTGCATCGTAATAATGATTTGTATAATCAATAAAAAAATTGATTAGAAAAAGGTGAGGTTGAGGAGGAAACTTATCCCTGGAATTGTAGCTTGTTGGTTCAACTGCTCTCTGCAATTTTAAATCTTCCCATTTCTAC

Coding sequence (CDS)

ATGAAATTCCTTCCCGAGTTCGTTTCTTGCTGCGTGCCGGTGAGCGTGTCGCGCATGGAGAATCCGGAAGCGACGGAGGCTCCGGGAGCCGAGGAGATAAGATCTCTGGCTCCGGTCACCACCAGAATACACCTGCGTAGAAGACGAGGTGCGCCGTATACTTCGGCGGCTAAAATGGCCGGCGATTGGACGCCGTCGCTAGGAGCGATCTCGGAGGATAATGTAGTTCTAGTAGTGATGGAGAGAAAGAAGAGCGAGGATCGGACGGCGGAATCAGAGCGATCTGTGAAGAGGAAGAGCGGATCTCGAAATGGAAAGGCAAGAGGAGTTCACGGACGTAACAACAGCAACGATTTTAGGCGAAGTCCGGCGGCCATACCGGTGGTGATTCCGGCGTTTTCTCCAACTCCGTTCTTATTCTGA

Protein sequence

MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMAGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDFRRSPAAIPVVIPAFSPTPFLF
BLAST of CmaCh04G009340 vs. TrEMBL
Match: A0A0A0L6G1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G094500 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-46
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAA-KM 60
           MKFL EFVSCCVPV++SR++NPE TEA G++E+RSL P+TTR H RR+R A   SAA K+
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDF 120
           A DW PSLGAISED VVLVVMER+KS+++T E ERSVKRKS SR+G++RGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

Query: 121 --RRSPAAIPVVIPAFSPTPFLF 141
             R+SP+AIPVVIPAFSP PFLF
Sbjct: 121 SLRQSPSAIPVVIPAFSPAPFLF 143

BLAST of CmaCh04G009340 vs. TrEMBL
Match: M5WVR1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013389mg PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 65/144 (45.14%), Postives = 85/144 (59.03%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVSRMENPEAT--EAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAK 60
           MKFL EFVSCC    ++R   P  T  +AP +EE  SL P   R+  RR+RG P  S + 
Sbjct: 1   MKFLLEFVSCC---GIAR---PATTGEQAPLSEETSSLVP--RRMRRRRKRGRPGNSGST 60

Query: 61  MAG--DWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNS 120
                +W PSL +ISEDNVV +V+      DRTAE ER++KRKSG     A+    R++ 
Sbjct: 61  SPNSVEWRPSLTSISEDNVVAMVV------DRTAEVERAMKRKSGQSRTIAQ---VRSHG 120

Query: 121 NDFRRSPAAIPVVIPAFSPTPFLF 141
            D+    A++   IPAFSPTPF+F
Sbjct: 121 EDY--GQASLTTAIPAFSPTPFMF 125

BLAST of CmaCh04G009340 vs. TrEMBL
Match: W9QQS7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021141 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVS--RMENPEATEA-PGAEEIRSLAPVTTRIHLRRRRGAPYTS-A 60
           M+FL  FVSCC P  +   R E+ +++ A P AEE RSL   + R   R +RG    S +
Sbjct: 1   MRFLV-FVSCCGPTVMPAVRPESSQSSSATPPAEETRSLVR-SRRYRRRPKRGRLGASGS 60

Query: 61  AKMAGDWTPSLGAISEDNVVLVVMERKKSED-----RTAESERSVKRKSGSRNGKARGVH 120
           A +  +W PSL +ISEDNVV+V  ER   +D     RTA  ER VKRKSGS + +   V 
Sbjct: 61  APVPVEWKPSLCSISEDNVVMV--ERSDGQDRQDQYRTAGPERLVKRKSGSGSSRMNVV- 120

Query: 121 GRNNSNDFRRSPAAIPVVIPAFSPTPFLF 141
             +  +D+ RS  + P VIPAFSPTPF+F
Sbjct: 121 -ASFGDDYGRS--SFPTVIPAFSPTPFMF 141

BLAST of CmaCh04G009340 vs. TrEMBL
Match: A0A0D2U0X6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G428800 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-11
Identity = 62/145 (42.76%), Postives = 81/145 (55.86%), Query Frame = 1

Query: 1   MKFLPEFVSCCVP-VSVSRMENPEATEAPGAEEIRS-LAPVTTRIHLRRRR---GAPYTS 60
           M+   +FVS CV    VS  E    T APG EE RS +AP    +  +++R   G P+++
Sbjct: 1   MRSFLKFVSRCVKNPEVSTTEEVVVT-APGREETRSFMAPKMVALKKKKKRVKVGTPFST 60

Query: 61  AAKMAGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNN 120
                 DW PSL  ISEDNV+    E+   E  T  ++R+VKRKSG   G    VH R+ 
Sbjct: 61  TP----DWKPSLYVISEDNVLAEKREKITPEASTTPADRAVKRKSGV--GSRSKVHVRSY 120

Query: 121 SNDFRRSPAAIPVVIPAFSPTPFLF 141
           S+D  R+    PVVIP FSPTPF+F
Sbjct: 121 SDDIGRNQE--PVVIPTFSPTPFMF 136

BLAST of CmaCh04G009340 vs. TrEMBL
Match: V4US81_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009866mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-11
Identity = 64/147 (43.54%), Postives = 83/147 (56.46%), Query Frame = 1

Query: 1   MKFLPEFVSCC-VPVSVSRMENPEAT----EAPGAEEIRSLAPVTTRIHLRRRRG--APY 60
           M+FL E VSCC    S     +   T    E+P +E  R L PV+ R   RRRRG  A  
Sbjct: 1   MRFLLELVSCCGCQESFCGGGDGGGTSPVPESPSSESSR-LVPVSRRSFRRRRRGRTAGG 60

Query: 61  TSAAKMAGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGR 120
               + +G+W PSL AISEDNVV+        E +T++S+ +VKRKSGS   K   +  R
Sbjct: 61  DFGGRSSGEWKPSLFAISEDNVVI--------ERQTSDSDGAVKRKSGS--FKPDKIRLR 120

Query: 121 NNSNDFRRSPAAIPVVIPAFSPTPFLF 141
             S DF +S  ++P  IPAFSPTPF+F
Sbjct: 121 TFSKDFGQS--SMPTFIPAFSPTPFMF 134

BLAST of CmaCh04G009340 vs. TAIR10
Match: AT5G54585.1 (AT5G54585.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.9e-07
Identity = 47/145 (32.41%), Postives = 66/145 (45.52%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAKMA 60
           MKFL E V  C        +  + + A  A++  S    T     RRR+           
Sbjct: 1   MKFLLELVVPCFG-----SQQFQESAASTADDSVSDETQTLMKQRRRRKRVRVAGQPGQV 60

Query: 61  GDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKS-----GSRNGKARGVHGRNN 120
            +W PSL  ISE+   +  +  K  E      ++ V+RKS     G  + ++ G H R  
Sbjct: 61  AEWRPSLSVISENKPAITKISEKNEE------KKKVRRKSEGNGGGDASSRSGGGHIRFR 120

Query: 121 SNDFRRSPAAIPVVIPAFSPTPFLF 141
           S+DF R+  A   VIPAFSPTPF+F
Sbjct: 121 SDDFGRN--AFEPVIPAFSPTPFMF 132

BLAST of CmaCh04G009340 vs. NCBI nr
Match: gi|778676197|ref|XP_004149939.2| (PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-46
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAA-KM 60
           MKFL EFVSCCVPV++SR++NPE TEA G++E+RSL P+TTR H RR+R A   SAA K+
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDF 120
           A DW PSLGAISED VVLVVMER+KS+++T E ERSVKRKS SR+G++RGVHGRNNSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNSNDF 120

Query: 121 --RRSPAAIPVVIPAFSPTPFLF 141
             R+SP+AIPVVIPAFSP PFLF
Sbjct: 121 SLRQSPSAIPVVIPAFSPAPFLF 143

BLAST of CmaCh04G009340 vs. NCBI nr
Match: gi|659102830|ref|XP_008452335.1| (PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-44
Identity = 103/143 (72.03%), Postives = 122/143 (85.31%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAA-KM 60
           MKFL EFVSCCVPV++SR+ENPE TEA  ++E+R+LAP+TTR H RR+R A   SAA K+
Sbjct: 1   MKFLFEFVSCCVPVNMSRIENPEETEAAASKEMRTLAPITTRKHRRRKRSALLPSAAAKL 60

Query: 61  AGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDF 120
           A DW PSLGAISED VVLVVMER+KS+D+ AE ERSVKRKSGSR+G++R VHGR NSNDF
Sbjct: 61  AADWKPSLGAISEDKVVLVVMEREKSDDQAAELERSVKRKSGSRDGESR-VHGRKNSNDF 120

Query: 121 --RRSPAAIPVVIPAFSPTPFLF 141
             R++P+AIPVVIPAFSP PFLF
Sbjct: 121 SLRQNPSAIPVVIPAFSPAPFLF 142

BLAST of CmaCh04G009340 vs. NCBI nr
Match: gi|595877258|ref|XP_007212234.1| (hypothetical protein PRUPE_ppa013389mg [Prunus persica])

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 65/144 (45.14%), Postives = 85/144 (59.03%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVSRMENPEAT--EAPGAEEIRSLAPVTTRIHLRRRRGAPYTSAAK 60
           MKFL EFVSCC    ++R   P  T  +AP +EE  SL P   R+  RR+RG P  S + 
Sbjct: 1   MKFLLEFVSCC---GIAR---PATTGEQAPLSEETSSLVP--RRMRRRRKRGRPGNSGST 60

Query: 61  MAG--DWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNS 120
                +W PSL +ISEDNVV +V+      DRTAE ER++KRKSG     A+    R++ 
Sbjct: 61  SPNSVEWRPSLTSISEDNVVAMVV------DRTAEVERAMKRKSGQSRTIAQ---VRSHG 120

Query: 121 NDFRRSPAAIPVVIPAFSPTPFLF 141
            D+    A++   IPAFSPTPF+F
Sbjct: 121 EDY--GQASLTTAIPAFSPTPFMF 125

BLAST of CmaCh04G009340 vs. NCBI nr
Match: gi|658061229|ref|XP_008366475.1| (PREDICTED: uncharacterized protein LOC103430120 [Malus domestica])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 64/141 (45.39%), Postives = 80/141 (56.74%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRR-RGAPYTSAAKM 60
           MKFL EFV CC     +R     +  AP +EE RSL    +RI  RRR RG+   S+   
Sbjct: 1   MKFLLEFVPCC---GATRPTTSNSEPAPLSEETRSLVRAPSRILRRRRKRGSSVNSS--- 60

Query: 61  AGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDF 120
             DWTPSL +ISEDNV   V+      DRTA  ER+VKRKSG    +   V  R++  D+
Sbjct: 61  --DWTPSLSSISEDNVAAKVV------DRTAAIERAVKRKSGQDRTR---VQVRSHGEDY 120

Query: 121 RRSPAAIPVVIPAFSPTPFLF 141
            ++  A    IPAFSPTPF+F
Sbjct: 121 GQASFA----IPAFSPTPFMF 120

BLAST of CmaCh04G009340 vs. NCBI nr
Match: gi|694329610|ref|XP_009355561.1| (PREDICTED: uncharacterized protein LOC103946564 [Pyrus x bretschneideri])

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 63/141 (44.68%), Postives = 78/141 (55.32%), Query Frame = 1

Query: 1   MKFLPEFVSCCVPVSVSRMENPEATEAPGAEEIRSLAPVTTRIHLRRR-RGAPYTSAAKM 60
           MKFL EFV CC     +R     +  AP +EE RSL    +RI  RRR RG+   S+   
Sbjct: 1   MKFLLEFVPCC---GATRPTTSNSEPAPLSEETRSLVRAPSRILRRRRKRGSSVNSS--- 60

Query: 61  AGDWTPSLGAISEDNVVLVVMERKKSEDRTAESERSVKRKSGSRNGKARGVHGRNNSNDF 120
             DWTPSL +ISEDNV   V+      DRTA  ER+VKRKS     +   V  R++  D+
Sbjct: 61  --DWTPSLSSISEDNVAAKVV------DRTAAIERAVKRKSDQDRTR---VQVRSHGEDY 120

Query: 121 RRSPAAIPVVIPAFSPTPFLF 141
             +  A    IPAFSPTPF+F
Sbjct: 121 GEASFA----IPAFSPTPFMF 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6G1_CUCSA1.1e-4672.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G094500 PE=4 SV=1[more]
M5WVR1_PRUPE1.3e-1345.14Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013389mg PE=4 SV=1[more]
W9QQS7_9ROSA1.5e-1145.64Uncharacterized protein OS=Morus notabilis GN=L484_021141 PE=4 SV=1[more]
A0A0D2U0X6_GOSRA2.6e-1142.76Uncharacterized protein OS=Gossypium raimondii GN=B456_009G428800 PE=4 SV=1[more]
V4US81_9ROSI3.4e-1143.54Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009866mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G54585.15.9e-0732.41 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778676197|ref|XP_004149939.2|1.6e-4672.73PREDICTED: uncharacterized protein LOC101213465 [Cucumis sativus][more]
gi|659102830|ref|XP_008452335.1|1.2e-4472.03PREDICTED: uncharacterized protein LOC103493394 [Cucumis melo][more]
gi|595877258|ref|XP_007212234.1|1.8e-1345.14hypothetical protein PRUPE_ppa013389mg [Prunus persica][more]
gi|658061229|ref|XP_008366475.1|2.3e-1345.39PREDICTED: uncharacterized protein LOC103430120 [Malus domestica][more]
gi|694329610|ref|XP_009355561.1|2.0e-1244.68PREDICTED: uncharacterized protein LOC103946564 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009340.1CmaCh04G009340.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35318FAMILY NOT NAMEDcoord: 2..140
score: 3.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G009340CmoCh04G010030Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G009340Cp4.1LG01g08260Cucurbita pepo (Zucchini)cmacpeB720
The following gene(s) are paralogous to this gene:

None