CmaCh04G008840 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G008840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 4596423 .. 4601218 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAGATTATGTTGTCATTTTGGTCTCTGCAGCATAAGCCTTCTTCGGTAAGATGAGTTAAGGTACACCATGGAATTAAAAATGATAGTGGAAGAGATTGAGTCGCATGGATGTATGCGGTAGTTTTGGAGGGGTCTGGAAAGTAAACACCAAGCATAGAAAGGGAGGGAAACGTGCATGATATTGTTTAAGCCATATTACTTTTCTTTTTATGTTGTATCCTGCCATTCTTTGAAATCATATGTCGACAGACTTTGCAATATAAAGAAAAAGCAACTTTACTTCCTTTAAGGGTGGGGAGCAAAATGAAAGAACACCTCTTCTTGTTTGGTTGGATCCGATTGGTTCGGATACACTATGGTTTTGTGATATAGGTAGATAAAAAGTTGGTCTACTGTATTAGATGACAGACATGATGATGGATGTTGTTGATGCTTTGTGATTGATAGTTTTTTTTTTTCTTTTTTCTTTTTTCCTTTTTATTGAACTCTGGTGTGATTACTGAATTATAATCGGAAAAAGAGGTGAATTTTCAGGTTACTTCTGTTTAGTTAACCCCCTCGTGCTCTTTGGTCTGGGTTCAAACACACATTACTAGAATTGATTTTCAAGAAAACTATGCACAGATCAGCCATTTGCATTAACATCAATGGGTTATTTTTTTCTTATTACATTTTTTTTTTATGAGAAAAATATTTAGTTGGTTCCTGAAGAGAAAACCAGGTTATTGTCTTGTACCCAACTTTAACTGAAGAAGTTTCATCTCAACATGACTCTTTGACAGGTAAGCAATGGGATTTGCAAATGATAGGTGAAGAAACACCAACATCCTCTGATGGTGGTGGAAATGGAAATGGAAATGGAGTGTCTAATTTGACTCAAATCTCTGAGCTTTGGAGTTGGATTTAAGAACTCAAGGAAATATGTCATACAACCACTAGTGTTGAAACTAGGCCCCTTTTAATACTATCCAAGGAATTTTTAAGTTGTAGTGGAGGTAGATATTATGAAAACCAGGAATATGAAGGTGAATCAGGGTGTGGTTCTTAAGACTGTTAGACGTTTTATTGCTTTGGTTTGGGTAAGGGGGGCCATCCCAATCTTTCTGCAAGCAATATGATGTTTGTTTTTGCCAAAGGAAGTTTGAAGAAAAGGGCTTAGCCCCATCAAGGGTAGCCGAGCTCCGACATCAAAACATGTTTGGTACATGTTTCCTTGTGTAAAGTTGTATGATTGACACCTAAAAAGCTTAGTACACATACTTCTTTGCAGTGTTTCTACTGCATAACTCTCTCTCTCCTATGTAAATTCCCTCATTTTCTCCCCCCTTTTTGATTTAAGTTTTATGGAGATATCATTATGCCCCTTGTGCATGCATCACATCACATTGGCTAGATCTCCTTGGGCCCCTTTTCTCTCTCTCTTGCAAGAAAGCACCAACCCTCCACTTAGATATTCCTTTTCTGTCAATTCATAAGTTTTTTTTAATGAAGGTTATGCATAGCCCCCCCAAAAATTAAGGAATGAAGTTGATGTGCATTTGTGGGAATATTATGGAGAATGCATTGAATTTTGTCGATGGACCTTTGCCTAATTAATCTTTTCTTACCATCCTTGCCCCAACTTCTTTAAAAGTTTACTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTACTTTCTTCCAATTCAATCAAGGATATTCTTGTAGTGGAATATTGAATGCTGCTACACTTTGGAAAAGAAAGTTTCCATAGCTGCTACACTTAGGTAACGAGGCATTTACAGGGACTTCTACTTTTAATAATATTATTTTGATTCTTCTCTACAGAAGTACACATATATCACACAAACCCTAAACCCTAAATACATATATGTCAAATAGATTACTTATATTCCTTCTATCAACTCCCCAAGTGGTCTAGGCTGTATTGTCTAATTGTTTTTTTTTTTTAAAGGGTAGACTGAAAAATCACTTAATCCAGGTACATAATGACCGTCAACATTGTTCTTTGAAAAATTGTTGTTGTAAATGTGGGTTTTCTCCATGGTGAAGATTATCTTGTTGTAGCTTTTGGGAGAGAGGTGGGGGATCTTGGAACCAACTGGACCAGAAGAGATAGTTAAGAAAGTTGAGGAAGCTAAGTGCAGCCAGCAACCAGTAGAAGAGATCAAGCCTGTCTTTGTTTAGGTTGTTGTCATGGAGCCAACCTCCGTTGGTGGAGCTTGATGTGATCTTATTCACCATGGACACTAGCAATGAGCTCAAGTAAAACCCAAATGAGTATGAGCAATAAGTTATGGCTGTTAAAAATGCTTGCATCCCTTTTACTGATTGCTTGTAAAAGAACTCAATGAGTCCAACTGCTGTGAACATTTCTGACAATCCAAAAATAAGGAACTGTGGTGTGATCCAGAAGATTGATATCGTCTGGTTCGAATTCACAGCTGAATCTCTCCTCTTTTTCTCCATTATAGCTGCTGAAACCATCGAAAATGTGGAGAGGAAGAGACCAAAGCCAATACGTTTTAAGGGTGAGATTCCAGAGGTGTGGCCAGTGAACTTTCTAGCAAATGGGACAAAGAAAGTATCATACAAAGGGACAATGAAAATGAGCATAATGTAAGGAATGGACTGAAGGGAAGCGGGAGGAATGTGGAAGGATTTGGTGAGCTGAGTATTCATCAAACTCCCTTGTTGAACAGAAAATGTTTGGAGCTGAGCCAATATTGTGTTGAATATAATCGTGCAAGCAAATATTGGGACAACTGATATCAATATCTTCACTTGCTCAACTTGAGTGGGAGTGCACAATCTCCATGGGCTTTCCCTGGTTGTTCCATCTAGGCTTTTGATACAAGCCTTGTCCAAGAACCTGAAGTTAAATTTTGGTACAAAACTTCAAATTTTGATAGAGAAATTGTCTTTTATGTTCAAAAGATTTGAAGCTTGTTTAAGGAAACTTTAGGTTAAGTTGTGAAGTCCTTTGAGGCGTCCAAATCAAGTTGAAAATAGAAAAGAAAGAGGACTTGCCTGAACTTTTGAGTGGGAATAAGGTTGGCAGAATGAGAGGATAAGGCAACTTTATGATTACTGGTTTGGCTTCCATGAAGCATTTGAGGGTTGGAAGGACAAACTTGCTTTCTCTTCAAAACAGCGGCAACAAAGACCTGAAAAACATATATATTTTCTTTGGATTAGTATGAGAAATAAAGTAGTTTTGATCCCACTTTTTCAGGACAAAATGACTCGGCAGACAGCACTAACTTTTATGTCTTTTCAATTCATACATTAATGTTACTCCTTTTTTAATCAACATAACCACATTATTTTCAAACAGTCTTCCCACTATGACCCTAAAATGTTTACTTTCAAATTCCCCCATTATTTCTTTTACTCAAAAATGGAAAATAAAATCAGATTTCAATTCTATTTTAGTAACACAACACTTTCAACACAAAATCCCGCTTTTGTCTTCTTCGATAGACTTTTAAATCATATGTTTGATGAATATTTTACATTTGATGAACATATCGTTTAAGATTCCTGGTAGAAAACAACACGAAAATTATACTCAAACCAGAAGACATTTAAAAGGGAACGATTAAAGGAAGATAATAACTAGAAGAAAGTAGAAAAAGGAAAAGAAAAGGGATATATGGTTTAGGGAACATGTTTGAGACACAAAAGAAAGCTTTTTCTGAAGGACACAGAGTTTCATGTTAAGTGTGCACAATACTAACACATGTAAAGTTGTAAAGAAAGAAAGAAAGCAAGAAAATTACTTGAAGAATTGGGATAAAAAGGGCTCCTTGAGGGGGTTTATTCCTGTAGTAAAAAATACCGCCAACCAAGCTGATCAACCCCATAGCCATAACAGCAGCTGAGACTCCAAATCCAACGTCCATCCCAGAATGGGTTTGGATCCAAACAACAAGAGTGAGGGCAATGAGCTCTCCAATTGAGAAGGCAAAATAAGCAGCATTGAAGTATGTTGAAAGCCTCTTGGATTGGCTTGGATCTTGTGGAGTGAACTGATCAGCCCCATGAGCTATCATGTTGGGCTTCACACACCCACTCCCAAGAGCCACCAAGTAGAGTGCCACAAAGAATATCAATGCCTTTATCCCCTTGGCTTCCACGCAGTCATCTCCTTCACTTAGCATGTTGCATTGGGGTGGCTTTAGTTGGGGAAGATGAGCCTGAACTGATAGTAATATGAACCCCTAAAACAACACAATTTTTAGCATTTAAATAATACCGTTTTTCTTATCTAATCTATTGTGTATACATGCACATGCAAAAGCTGTATTTTTTCGAAATTATATATGTCAGCTATCATAGGTGAACCTAAATATAACTCAACTAATAAAATTATATATCATCGATTGAGAGATAAGATGTTTTGGATTCAAACCACATAAAAAATGTGTACAATAAACAAACACGATGGAAGGGAGGGGGAACTGAACTTACAGAAAGTTCAACAAAGCCAAAGATAAGCATTGTCCAAAAACTCCCAAGATAGGAATCAGAAAGGAAACCGCCAAGAAGTGCCAAAAGAAACACAGTCCCAACAAAGTTTGTCACTACGTTTGCAGATTTTGACAGTGAAAAGTGCATCTCATTTATCACATATGTTATCAGATTGTTCCCAACTGCAGCAATCGCCATTATCTCGAATGATTGCAGCCCTGCACGGACCGTATACAAAGCGATCGCTCTATCAGATTCAAAAGTATTACAAGTTAAATTTTACGAGATCGAGATTTAA

mRNA sequence

ATGAGAAAGATTATGTTGTCATTTTGGTCTCTGCAGCATAAGCCTTCTTCGTTGGTTCCTGAAGAGAAAACCAGAAAAGGGCTTAGCCCCATCAAGGGTAGCCGAGCTCCGACATCAAAACATGGTAGACTGAAAAATCACTTAATCCAGCTTTTGGGAGAGAGGTGGGGGATCTTGGAACCAACTGGACCAGAAGAGATAGTTAAGAAAGTTGAGGAAGCTAAGTGCAGCCAGCAACCAGTAGAAGAGATCAAGCCTAACTCAATGAGTCCAACTGCTGTGAACATTTCTGACAATCCAAAAATAAGGAACTGTGGTGTGATCCAGAAGATTGATATCGTCTGGTTCGAATTCACAGCTGAATCTCTCCTCTTTTTCTCCATTATAGCTGCTGAAACCATCGAAAATGTGGAGAGGAAGAGACCAAAGCCAATACGTTTTAAGGGTGAGATTCCAGAGGTGTGGCCAGTGAACTTTCTAGCAAATGGGACAAAGAAAGTATCATACAAAGGGACAATGAAAATGAGCATAATATTGTTCCCAACTGCAGCAATCGCCATTATCTCGAATGATTGCAGCCCTGCACGGACCGTATACAAAGCGATCGCTCTATCAGATTCAAAAGTATTACAAGTTAAATTTTACGAGATCGAGATTTAA

Coding sequence (CDS)

ATGAGAAAGATTATGTTGTCATTTTGGTCTCTGCAGCATAAGCCTTCTTCGTTGGTTCCTGAAGAGAAAACCAGAAAAGGGCTTAGCCCCATCAAGGGTAGCCGAGCTCCGACATCAAAACATGGTAGACTGAAAAATCACTTAATCCAGCTTTTGGGAGAGAGGTGGGGGATCTTGGAACCAACTGGACCAGAAGAGATAGTTAAGAAAGTTGAGGAAGCTAAGTGCAGCCAGCAACCAGTAGAAGAGATCAAGCCTAACTCAATGAGTCCAACTGCTGTGAACATTTCTGACAATCCAAAAATAAGGAACTGTGGTGTGATCCAGAAGATTGATATCGTCTGGTTCGAATTCACAGCTGAATCTCTCCTCTTTTTCTCCATTATAGCTGCTGAAACCATCGAAAATGTGGAGAGGAAGAGACCAAAGCCAATACGTTTTAAGGGTGAGATTCCAGAGGTGTGGCCAGTGAACTTTCTAGCAAATGGGACAAAGAAAGTATCATACAAAGGGACAATGAAAATGAGCATAATATTGTTCCCAACTGCAGCAATCGCCATTATCTCGAATGATTGCAGCCCTGCACGGACCGTATACAAAGCGATCGCTCTATCAGATTCAAAAGTATTACAAGTTAAATTTTACGAGATCGAGATTTAA

Protein sequence

MRKIMLSFWSLQHKPSSLVPEEKTRKGLSPIKGSRAPTSKHGRLKNHLIQLLGERWGILEPTGPEEIVKKVEEAKCSQQPVEEIKPNSMSPTAVNISDNPKIRNCGVIQKIDIVWFEFTAESLLFFSIIAAETIENVERKRPKPIRFKGEIPEVWPVNFLANGTKKVSYKGTMKMSIILFPTAAIAIISNDCSPARTVYKAIALSDSKVLQVKFYEIEI
Homology
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BLAST of CmaCh04G008840 vs. TrEMBL
Match: A0A0A9FAD9_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 41/80 (51.25%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 89  MSPTAVNISDNPKIRNCGVIQKIDIVWFEFTAESLLFFSIIAAETIENVERKRPKPIRFK 148
           MSPTAVNISD+P  RNCG IQK++     +T    L  S  AA T+ENV  KRP P+R+ 
Sbjct: 1   MSPTAVNISDSPNTRNCGAIQKMERSRPPWTLSERLRASTSAAATMENVTAKRPTPMRWS 60

Query: 149 GEIPEVWPVNFLANGTKKVS 169
           G IP   PV     GTK  S
Sbjct: 61  GVIPVATPVRRRTAGTKAAS 80

The following BLAST results are available for this feature:
BLAST of CmaCh04G008840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G008840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9FAD9_ARUDO1.6e-1051.25Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CmaCh04G008840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G008840 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G008840.1CmaCh04G008840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G008840Carg25874Silver-seed gourdcarcmaB0015
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G008840Cucumber (Gy14) v2cgybcmaB416
CmaCh04G008840Melon (DHL92) v3.6.1cmamedB778
CmaCh04G008840Silver-seed gourdcarcmaB0783
CmaCh04G008840Cucumber (Chinese Long) v3cmacucB0837
CmaCh04G008840Watermelon (97103) v2cmawmbB718
CmaCh04G008840Wax gourdcmawgoB0823
CmaCh04G008840Wax gourdcmawgoB0826
CmaCh04G008840Cucurbita maxima (Rimu)cmacmaB350
CmaCh04G008840Cucumber (Gy14) v1cgycmaB0277
CmaCh04G008840Cucurbita moschata (Rifu)cmacmoB700
CmaCh04G008840Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G008840Wild cucumber (PI 183967)cmacpiB710
CmaCh04G008840Cucumber (Chinese Long) v2cmacuB702
CmaCh04G008840Melon (DHL92) v3.5.1cmameB689
CmaCh04G008840Watermelon (Charleston Gray)cmawcgB614
CmaCh04G008840Watermelon (97103) v1cmawmB680
CmaCh04G008840Cucurbita pepo (Zucchini)cmacpeB714
CmaCh04G008840Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G008840Bottle gourd (USVL1VR-Ls)cmalsiB687
CmaCh04G008840Bottle gourd (USVL1VR-Ls)cmalsiB692