Carg25874 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25874
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_337 : 122421 .. 125864 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGATTATGTTGTCATTTTGGTCTCTGCAGCATAAGCCTTCTTCGGTAAGATGAGTTAAGGTACACCATGGATTTAAAAATGATAGTGGAAGAGATTGAGTCGCATGGATGTATGCGGTAGTTTTGGAGGGGTCTGGAAAGTAAACACCAAGCATAGAAAGGGAGGGAAACGTGCATGATATTGTTTAAGCCATATTACTTTTCTTTTTATGCTGTATCCTGCCATTCTTTGAAATCATATGTCGACAGACTTTGCAATATAAAGAAAAAGGAACTTTACTTCCTTTAAGGGTGGGGAGCAAAATGAAAGAACACCTCTTCTTGTTTGGTTGGATCCGATTGGTTCGGATACACTATGGTTTTGTGATATAGGTAGATAAAAAGTTGGTCTACTGTATTAGATGACAGACATGATGATGGATGTTGTTGATGCTTTGAGATTGATAGTTTTTTTTTTCCTTTTTTCTTTTTTATTGAACTCTGGTGTGATTACTGAATTATAATCGGAAAAAGAGGTGAATTTTCAGGTTACTTCTGTTTAGTTATACCCCCTCGTGCTCTTTGGTCTGGGTTCAAACACATCACTAGAATTTATTTTCAAGAAAACTATGCACAGATCAGCCCATTTGCATTAACATCACTAGAAATTTTTCTTTTTTTTTTTTTTTTGATGAGAAAAATATTTAGTTGGTTCCTAAAGAGAAAACCAGGTTATTGTCTTTTACCCAACTTTAACTGAAGAAGTTTCATCTCAGCATGACTCTTTGACAGGTAAGCAATGGGATTTGCAAATGATAGGTGACGAAACACCAACATCCTCTGATGGTGGTGGAAATGGACGGTCTAATTTGACTCTAATCTCTGAGCTTTGGAGTTGGATTTAAGAACTCAAGGAAATATGTCATACAACCACTAGTGTTGAAACTAGACCCCTTTTAATACTATCCAAGGAATTTTTAAGTTGTAGTGGAGGTAGATATTATGAAAACCAGGAATATGAAGGTGAATCAGGGTGTGGTTCTTAAGACTGTTAGACGTTTTATTGCTTTAGTTTGGGTAAGGGGGGCCATCCCAATCTTTCTGCAAGCAATATGATGTTTGTTTTGCCAAAAGAAGTTTGAAGAAAAGGGCTTAGCCCCATCAAGGGTAGCCGAGCTCCGACATCAAAACATGTTTGGTACATGTTTCCTTGTGTAAAGTTGTATGATTGACACCTAAAAAGCTTAGTACACATACTTCTTTACAGTGTTTCTACTGCATAACTATCTCTCTCCTATGTAAATTCCCTCATTTTCTCCACCCTTTTTGACTTAAGTTTTATAGGGATATCATTATGCCCCTTGTGCATGCATCACATCACATTGGCTAGATCTCCTTGGGCCCCTTTTTCTCTCTCTCTCTTGCAAGAAAGCACCAACCCTCCACTTAGATATTCCTTTTCTGTCAATTCATAAGTTTTTTAATGAAGGTTATCCATAGCCCCCCCCAAAAATTAAGGAATGAAGTTGATGTGCATTTGTGAGAAGATTATGGAGAATGCATTGAATTTTGTCGATGGACCTTTGCCTAATAAATCTTTTCTTACCATCCTTTCCCCCAACTTCTTTAAAAGTTTACTTTTTTGTTTTTTGTTTCCTTTTTTTTATTTTTTATTTTTTAATATTACTTTCTTCCAATTCAATCAAGGATATTCTTGTAGTGGAATATTGAATGCTGCTACACTTTGGAAAGAAAGTTTCCATAGCTGCTACACTTAGGAAACGAGGCATTTACAGGGGACTTCTACTTTTAATATTATTTTGATTCTTCTCTACAGAAGTACACATATATCACACAAACCCTAAACCCTAAATACATATATATCAAATAGATTACTTATATTCCTTCTATCAACTCCCCAAGTGGTCTAGGCTGTATTGTCTAATTGTCTTTTTTTTTTTAAAAGGTAGACTGAAAAATCATTTAATCCAGGTACATAATGACCATCAACATTGTTCTTTGAAAAATTGTTGTTGTAAATGTGAGTTTTCTTCATGGTGAAGATTATCTTGTTGTAGCTTTTGGGAGAGAGATGGGGGATCTTGGAACCAACTGGACCAGAAGAGATAGTTAAGAAAGTTGAGGAAGCTAAGTGCAGCCAGCAACCAGTAGAAGAGATCAAGCCTGTCTTTGTTTAGGTTGTTGTCATGGAGCCAGCCTCCGTTGGTGGAGCTTGATGTGATCTTATTCACCATGGACACTAGCAATGAGCTCAAGTAAAACCCAAATGAGTATGAGCAATATGTTATGGCTGTTAAAAATGCTTGCATCCCTTTTACTGATTGCTTGTAAAAGAACTCAATGAGTCCAACTGCTGTGAACATCTCTGACAATCCAAAAATAAGGAACTGTGGTGTGATCCAGAAGATCGATATCGTCTGGTTCGAATTCACAGCTGAATCTCTTCTCTTTTTCTCCATTATAGCTGCTGAAACCATCGAAAATGTGGAGAGGAAGAGGCCAAAGCCAATACGTTTTAAGGGTGAGATTCCAGAGGTGTGGCCAGTGAACTTTCTAGCAAATGGGACAAAGAAAGTATCATACAAAGGGACAATGAAAATGAGCATAATGTAAGGAATGGACTGAAGGGAAGCGGGAGGAATGTGGAAGGATTTGGTGAGCTGAGTATTCATCAAACTCCCTTGTTGAACAGAAAATGTTTGGAGCTGAGCCAATATTGTGTTGAATATAATCGTGCAAGCAAATATTGGGACAACTGATATCAATATCTTCACTTGCTCAACCTGAGTGGGAGTGCACAATCTCCATGGGCTTTCCCTGGTTGTTCCATCTTGGCTTTTGATACAAGCCTTGTCCAAGAACCTGAAGTTAAATTATGGTACAAAACTTCATCACCACGTCCAAAACTTCAAATTTTTATAGAGAATTTGGCTTTTACGTTCAAAAGATTTGAGCTTGTTTAAGGAAACTCTTAAGGTTATGTTGTGAAGTCCTTTGAGACGTCCAAATCAAGTTCAAAATAGAAAAGAAAGAGGACTTGCCTGAACTTTTGAGTGGGAATAAGGTTGGCAGAATGAGAGGATAAGGCAACTTTATGATTACTGGTTTGGCTTCCATGAAGCATTTGAGGGTTGGAAGGACAAACTTGCTTTCTCTTCAAAACAGCGGCAACAAAGACCTGAAAAACATATATATTTTCTTTGGATTAGTATGAGAAATAAAGTAGTTTTGATCCCACTTTTTCAGGACAAAATGACTCACCAGACAGCACTAACTTTTATGTCTTTTCAATTCATACATAAATGTTACTCCTTTTTTAATCAACATAACCACATTATTTTCAAATAGTCTCCCCACTATGACCCTAAATTGTTTACTTTCAAATTCCCATTATTTCTTTAGCTCAAAAATGGAAAAATAAAATCTCAACATTCCTAG

mRNA sequence

ATGAGGAAGATTATGTTGTCATTTTGGTCTCTGCAGCATAAGCCTTCTTCGGGTGGGGAGCAAAATGAAAGAACACCTCTTCTTGTTTGGTTGGATCCGATTGGTTCGGATACACTATGGTTTTGTGATATAGGTAAGCAATGGGATTTGCAAATGATAGGTGACGAAACACCAACATCCTCTGATGGTGGTGGAAATGGACGGTCTAATTTGACTCTAATCTCTGAGCTTTGGAGTAGACTGAAAAATCATTTAATCCAGAACTCAATGAGTCCAACTGCTGTGAACATCTCTGACAATCCAAAAATAAGGAACTGTGGTGTGATCCAGAAGATCGATATCGTCTGGTTCGAATTCACAGCTGAATCTCTTCTCTTTTTCTCCATTATAGCTGCTGAAACCATCGAAAATGTGGAGAGGAAGAGGCCAAAGCCAATACGTTTTAAGGGTGAGATTCCAGAGAGAATTTGGCTTTTACGTTCAAAAGATTTGAGCTTGTTTAAGGAAACTCTTAAGAATGAGAGGATAAGGCAACTTTATGATTACTGGTTTGGCTTCCATGAAGCATTTGAGGGTTGGAAGGACAAACTTGCTTTCTCTTCAAAACAGCGGCAACAAAGACCTGAAAAACATATATATTTTCTTTGGATTAGTATGAGAAATAAACTCAAAAATGGAAAAATAAAATCTCAACATTCCTAG

Coding sequence (CDS)

ATGAGGAAGATTATGTTGTCATTTTGGTCTCTGCAGCATAAGCCTTCTTCGGGTGGGGAGCAAAATGAAAGAACACCTCTTCTTGTTTGGTTGGATCCGATTGGTTCGGATACACTATGGTTTTGTGATATAGGTAAGCAATGGGATTTGCAAATGATAGGTGACGAAACACCAACATCCTCTGATGGTGGTGGAAATGGACGGTCTAATTTGACTCTAATCTCTGAGCTTTGGAGTAGACTGAAAAATCATTTAATCCAGAACTCAATGAGTCCAACTGCTGTGAACATCTCTGACAATCCAAAAATAAGGAACTGTGGTGTGATCCAGAAGATCGATATCGTCTGGTTCGAATTCACAGCTGAATCTCTTCTCTTTTTCTCCATTATAGCTGCTGAAACCATCGAAAATGTGGAGAGGAAGAGGCCAAAGCCAATACGTTTTAAGGGTGAGATTCCAGAGAGAATTTGGCTTTTACGTTCAAAAGATTTGAGCTTGTTTAAGGAAACTCTTAAGAATGAGAGGATAAGGCAACTTTATGATTACTGGTTTGGCTTCCATGAAGCATTTGAGGGTTGGAAGGACAAACTTGCTTTCTCTTCAAAACAGCGGCAACAAAGACCTGAAAAACATATATATTTTCTTTGGATTAGTATGAGAAATAAACTCAAAAATGGAAAAATAAAATCTCAACATTCCTAG

Protein sequence

MRKIMLSFWSLQHKPSSGGEQNERTPLLVWLDPIGSDTLWFCDIGKQWDLQMIGDETPTSSDGGGNGRSNLTLISELWSRLKNHLIQNSMSPTAVNISDNPKIRNCGVIQKIDIVWFEFTAESLLFFSIIAAETIENVERKRPKPIRFKGEIPERIWLLRSKDLSLFKETLKNERIRQLYDYWFGFHEAFEGWKDKLAFSSKQRQQRPEKHIYFLWISMRNKLKNGKIKSQHS

Homology

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BLAST of Carg25874 vs. TrEMBL
Match: tr|A0A0A9FAD9|A0A0A9FAD9_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.3e-08
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 90  MSPTAVNISDNPKIRNCGVIQKIDIVWFEFTAESLLFFSIIAAETIENVERKRPKPIRFK 149
           MSPTAVNISD+P  RNCG IQK++     +T    L  S  AA T+ENV  KRP P+R+ 
Sbjct: 1   MSPTAVNISDSPNTRNCGAIQKMERSRPPWTLSERLRASTSAAATMENVTAKRPTPMRWS 60

Query: 150 GEIP 154
           G IP
Sbjct: 61  GVIP 64

The following BLAST results are available for this feature:

BLAST of Carg25874 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25874 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25874 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25874 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A9FAD9\|A0A0A9FAD9_ARUDO	8.3e-08	54.69	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25874-RA	Carg25874-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25874	CmaCh04G008840	Cucurbita maxima (Rimu)	carcmaB0015

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25874	Bottle gourd (USVL1VR-Ls)	carlsiB008
Carg25874	Melon (DHL92) v3.5.1	carmeB0007
Carg25874	Melon (DHL92) v3.6.1	carmedB0008
Carg25874	Watermelon (Charleston Gray)	carwcgB0009
Carg25874	Watermelon (97103) v2	carwmbB0008
Carg25874	Cucumber (Gy14) v2	carcgybB0008
Carg25874	Cucurbita maxima (Rimu)	carcmaB0014
Carg25874	Cucurbita moschata (Rifu)	carcmoB0014
Carg25874	Cucurbita moschata (Rifu)	carcmoB0015
Carg25874	Cucurbita pepo (Zucchini)	carcpeB0012
Carg25874	Cucurbita pepo (Zucchini)	carcpeB0013
Carg25874	Wild cucumber (PI 183967)	carcpiB0009
Carg25874	Cucumber (Chinese Long) v2	carcuB0009
Carg25874	Cucumber (Chinese Long) v3	carcucB0009