CmaCh04G008640 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G008640
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description1-deoxy-D-xylulose 5-phosphate synthase
LocationCma_Chr04 : 4432800 .. 4433303 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATGAGGTGATTCAAAGCAGTCATACAAACATAATGAAAAGAAAAAGAAAGAAAAAAAAATTCATACAAACATAATAAAAATAAAAATAAAGAAAATAAATAGAGTGAGTTAGAGTTGATTTGGGTGGTCTTTTTTTGCAGGCATATCCTCACAAAATTCTCACTGGAAGAAGGTCTAGAATGCATACTCTTAAGGCAAACCTCAGGGCTTGCTGGTTTTCCCAAAAGGGATGAGAGTGTTCATGATGCTTTTGGTGCAGGACACAGTTCTACAAGCATATCAGCTGCTCTTGGTATGGCTGTTGCAAGAGAGCTTTTGGGAAAGAAGAACAGTGTCATTTCTGTGATTGGTGATAGAGCTATGACAGCAGGTCAAGCGTACGAGGCGATGAATAATGCAGGCTATATGGATAAGAACATGATCATTATTCTCAACGACAACAACCAAGTCTCATTGCCAACCGCTATGCCCTGCTACTCCTGTTGGAGCACTCAGTAG

mRNA sequence

ATGGGCATGAGGCATATCCTCACAAAATTCTCACTGGAAGAAGGTCTAGAATGCATACTCTTAAGGCAAACCTCAGGGCTTGCTGGTTTTCCCAAAAGGGATGAGAGTGTTCATGATGCTTTTGGTGCAGGACACAGTTCTACAAGCATATCAGCTGCTCTTGGTATGGCTGTTGCAAGAGAGCTTTTGGGAAAGAAGAACAGTGTCATTTCTGTGATTGGTGATAGAGCTATGACAGCAGGTCAAGCGTACGAGGCGATGAATAATGCAGGCTATATGGATAAGAACATGATCATTATTCTCAACGACAACAACCAAGTCTCATTGCCAACCGCTATGCCCTGCTACTCCTGTTGGAGCACTCAGTAG

Coding sequence (CDS)

ATGGGCATGAGGCATATCCTCACAAAATTCTCACTGGAAGAAGGTCTAGAATGCATACTCTTAAGGCAAACCTCAGGGCTTGCTGGTTTTCCCAAAAGGGATGAGAGTGTTCATGATGCTTTTGGTGCAGGACACAGTTCTACAAGCATATCAGCTGCTCTTGGTATGGCTGTTGCAAGAGAGCTTTTGGGAAAGAAGAACAGTGTCATTTCTGTGATTGGTGATAGAGCTATGACAGCAGGTCAAGCGTACGAGGCGATGAATAATGCAGGCTATATGGATAAGAACATGATCATTATTCTCAACGACAACAACCAAGTCTCATTGCCAACCGCTATGCCCTGCTACTCCTGTTGGAGCACTCAGTAG

Protein sequence

MGMRHILTKFSLEEGLECILLRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAGQAYEAMNNAGYMDKNMIIILNDNNQVSLPTAMPCYSCWSTQ
Homology
[Close]
BLAST of CmaCh04G008640 vs. Swiss-Prot
Match: DXS2_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.7e-40
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQTSGLAGFPKRDES HDAFGAGHSSTSISAALGMAVAR+LLGKKN VISVIGD AMTA
Sbjct: 158 IRQTSGLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTA 217

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNN+GY+D NMI++LNDN QVSLPTA
Sbjct: 218 GQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTA 249

[Close]
BLAST of CmaCh04G008640 vs. Swiss-Prot
Match: DXS_ARATH (1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=DXS PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-33
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQT+GL+GF KR ES HD FG GHSST+ISA LGMAV R+L GK N+V++VIGD AMTA
Sbjct: 164 MRQTNGLSGFTKRGESEHDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVVAVIGDGAMTA 223

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+D +MI+ILNDN QVSLPTA
Sbjct: 224 GQAYEAMNNAGYLDSDMIVILNDNKQVSLPTA 255

[Close]
BLAST of CmaCh04G008640 vs. Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.2e-33
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           LRQT+GLAGF KR ES +D FG GHSST+ISA LGMAV R+L G+ N+VI+VIGD AMTA
Sbjct: 163 LRQTNGLAGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGRNNNVIAVIGDGAMTA 222

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+D +MI+ILNDN QVSLPTA
Sbjct: 223 GQAYEAMNNAGYLDSDMIVILNDNRQVSLPTA 254

[Close]
BLAST of CmaCh04G008640 vs. Swiss-Prot
Match: DXS1_ORYSJ (1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 5.2e-33
Identity = 69/92 (75.00%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQT+GL+GF KR ES +D+FG GHSST+ISAALGMAV R+L G KN+V++VIGD AMTA
Sbjct: 160 MRQTNGLSGFTKRSESEYDSFGTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTA 219

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+D +MI+ILNDN QVSLPTA
Sbjct: 220 GQAYEAMNNAGYLDSDMIVILNDNKQVSLPTA 251

[Close]
BLAST of CmaCh04G008640 vs. Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.5e-27
Identity = 65/98 (66.33%), Postives = 74/98 (75.51%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           LR   GL+GF KR ES HD FGAGHSSTSISA LGMAVA EL GKKN+VI+VIGD +++A
Sbjct: 97  LRTGGGLSGFTKRTESDHDPFGAGHSSTSISAGLGMAVASELAGKKNNVIAVIGDGSISA 156

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPT--AMPCY 117
           G AYEAMNNAG M+  +I+ILNDNN    P   AM  Y
Sbjct: 157 GMAYEAMNNAGAMNSRLIVILNDNNMSIAPPVGAMSAY 194

[Close]
BLAST of CmaCh04G008640 vs. TrEMBL
Match: A0A0A0L869_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114510 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-38
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTA
Sbjct: 156 LRQTSGLAGFPKRDESIHDAFGAGHSSTSISAGLGMAVGRDLLGKKNSVISVIGDGAMTA 215

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Sbjct: 216 GQAYEAMNNAGYLDTNMIVILNDNKQVSLPTA 247

[Close]
BLAST of CmaCh04G008640 vs. TrEMBL
Match: A0A0D3GN75_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQTSGLAGFPKRDES HDAFGAGHSSTSISAALGMAVAR+LLGKKN VISVIGD AMTA
Sbjct: 156 IRQTSGLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTA 215

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNN+GY+D NMI++LNDN QVSLPTA
Sbjct: 216 GQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTA 247

[Close]
BLAST of CmaCh04G008640 vs. TrEMBL
Match: I1Q8P8_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQTSGLAGFPKRDES HDAFGAGHSSTSISAALGMAVAR+LLGKKN VISVIGD AMTA
Sbjct: 158 IRQTSGLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTA 217

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNN+GY+D NMI++LNDN QVSLPTA
Sbjct: 218 GQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTA 249

[Close]
BLAST of CmaCh04G008640 vs. TrEMBL
Match: A0A0E0E8A2_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQTSGLAGFPKRDES HDAFGAGHSSTSISAALGMAVAR+LLGKKN VISVIGD AMTA
Sbjct: 158 IRQTSGLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTA 217

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNN+GY+D NMI++LNDN QVSLPTA
Sbjct: 218 GQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTA 249

[Close]
BLAST of CmaCh04G008640 vs. TrEMBL
Match: A0A0E0LI21_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQTSGLAGFPKRDES HDAFGAGHSSTSISAALGMAVAR+LLGKKN VISVIGD AMTA
Sbjct: 153 IRQTSGLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTA 212

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNN+GY+D NMI++LNDN QVSLPTA
Sbjct: 213 GQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTA 244

[Close]
BLAST of CmaCh04G008640 vs. TAIR10
Match: AT4G15560.1 (AT4G15560.1 Deoxyxylulose-5-phosphate synthase)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-34
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQT+GL+GF KR ES HD FG GHSST+ISA LGMAV R+L GK N+V++VIGD AMTA
Sbjct: 164 MRQTNGLSGFTKRGESEHDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVVAVIGDGAMTA 223

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+D +MI+ILNDN QVSLPTA
Sbjct: 224 GQAYEAMNNAGYLDSDMIVILNDNKQVSLPTA 255

[Close]
BLAST of CmaCh04G008640 vs. TAIR10
Match: AT3G21500.2 (AT3G21500.2 1-deoxy-D-xylulose 5-phosphate synthase 1)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-33
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQT+GL+G+ KR ES HD+FG GHSST++SA LGMAV R+L G  NSV+SVIGD AMTA
Sbjct: 154 IRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTA 213

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+  NMI+ILNDN QVSLPTA
Sbjct: 214 GQAYEAMNNAGYLHSNMIVILNDNKQVSLPTA 245

[Close]
BLAST of CmaCh04G008640 vs. TAIR10
Match: AT5G11380.1 (AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 22  RQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTAG 81
           RQ SG++G   R ES +D+FG GH   SISA LG+AVAR++ GK++ V++VI +  +TAG
Sbjct: 166 RQNSGISGVTSRLESEYDSFGTGHGCNSISAGLGLAVARDMKGKRDRVVAVIDNVTITAG 225

Query: 82  QAYEAMNNAGYMDKNMIIILNDN 105
           QAYEAM+NAGY+D NMI+ILND+
Sbjct: 226 QAYEAMSNAGYLDSNMIVILNDS 248

[Close]
BLAST of CmaCh04G008640 vs. NCBI nr
Match: gi|449432964|ref|XP_004134268.1| (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 4.1e-38
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTA
Sbjct: 156 LRQTSGLAGFPKRDESIHDAFGAGHSSTSISAGLGMAVGRDLLGKKNSVISVIGDGAMTA 215

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Sbjct: 216 GQAYEAMNNAGYLDTNMIVILNDNKQVSLPTA 247

[Close]
BLAST of CmaCh04G008640 vs. NCBI nr
Match: gi|659098540|ref|XP_008450188.1| (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 4.1e-38
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           LRQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAV R+LLGKKNSVISVIGD AMTA
Sbjct: 156 LRQTSGLAGFPKRDESIHDAFGAGHSSTSISAGLGMAVGRDLLGKKNSVISVIGDGAMTA 215

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+D NMI+ILNDN QVSLPTA
Sbjct: 216 GQAYEAMNNAGYLDTNMIVILNDNKQVSLPTA 247

[Close]
BLAST of CmaCh04G008640 vs. NCBI nr
Match: gi|1002287268|ref|XP_015647944.1| (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Oryza sativa Japonica Group])

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQTSGLAGFPKRDES HDAFGAGHSSTSISAALGMAVAR+LLGKKN VISVIGD AMTA
Sbjct: 158 IRQTSGLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTA 217

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNN+GY+D NMI++LNDN QVSLPTA
Sbjct: 218 GQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTA 249

[Close]
BLAST of CmaCh04G008640 vs. NCBI nr
Match: gi|218199226|gb|EEC81653.1| (hypothetical protein OsI_25196 [Oryza sativa Indica Group])

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQTSGLAGFPKRDES HDAFGAGHSSTSISAALGMAVAR+LLGKKN VISVIGD AMTA
Sbjct: 158 IRQTSGLAGFPKRDESAHDAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTA 217

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNN+GY+D NMI++LNDN QVSLPTA
Sbjct: 218 GQAYEAMNNSGYLDSNMIVVLNDNKQVSLPTA 249

[Close]
BLAST of CmaCh04G008640 vs. NCBI nr
Match: gi|695020001|ref|XP_009397035.1| (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X2 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-37
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 21  LRQTSGLAGFPKRDESVHDAFGAGHSSTSISAALGMAVARELLGKKNSVISVIGDRAMTA 80
           +RQTSGLAGFPKRDES+HDAFGAGHSSTSISA LGMAVAR+LLGKKN V+SVIGD AMTA
Sbjct: 79  IRQTSGLAGFPKRDESIHDAFGAGHSSTSISAGLGMAVARDLLGKKNHVVSVIGDGAMTA 138

Query: 81  GQAYEAMNNAGYMDKNMIIILNDNNQVSLPTA 113
           GQAYEAMNNAGY+D N++I+LNDN QVSLPTA
Sbjct: 139 GQAYEAMNNAGYLDSNLVIVLNDNKQVSLPTA 170

The following BLAST results are available for this feature:
BLAST of CmaCh04G008640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DXS2_ORYSJ9.7e-4088.04Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativ... [more]
DXS_ARATH3.0e-3375.001-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana G... [more]
DXS_CAPAN5.2e-3376.09Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annu... [more]
DXS1_ORYSJ5.2e-3375.001-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. ... [more]
DXS_RHOPT5.5e-2766.331-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TI... [more]
BLAST of CmaCh04G008640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L869_CUCSA2.8e-3890.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114510 PE=3 SV=1[more]
A0A0D3GN75_9ORYZ1.1e-3788.04Uncharacterized protein OS=Oryza barthii PE=3 SV=1[more]
I1Q8P8_ORYGL1.1e-3788.04Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1[more]
A0A0E0E8A2_9ORYZ1.1e-3788.04Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1[more]
A0A0E0LI21_ORYPU1.1e-3788.04Uncharacterized protein OS=Oryza punctata PE=3 SV=1[more]
BLAST of CmaCh04G008640 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15560.11.7e-3475.00 Deoxyxylulose-5-phosphate synthase[more]
AT3G21500.21.1e-3373.91 1-deoxy-D-xylulose 5-phosphate synthase 1[more]
AT5G11380.11.5e-2259.04 1-deoxy-D-xylulose 5-phosphate synthase 3[more]
BLAST of CmaCh04G008640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432964|ref|XP_004134268.1|4.1e-3890.22PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cu... [more]
gi|659098540|ref|XP_008450188.1|4.1e-3890.22PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cu... [more]
gi|1002287268|ref|XP_015647944.1|1.6e-3788.04PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Or... [more]
gi|218199226|gb|EEC81653.1|1.6e-3788.04hypothetical protein OsI_25196 [Oryza sativa Indica Group][more]
gi|695020001|ref|XP_009397035.1|2.6e-3785.87PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic iso... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005477Dxylulose-5-P_synthase
Vocabulary: Molecular Function
TermDefinition
GO:00086611-deoxy-D-xylulose-5-phosphate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0016114terpenoid biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0052865 1-deoxy-D-xylulose 5-phosphate biosynthetic process
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0009228 thiamine biosynthetic process
cellular_component GO:0009507 chloroplast
molecular_function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G008640.1CmaCh04G008640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005477Deoxyxylulose-5-phosphate synthasePFAMPF13292DXP_synthase_Ncoord: 21..110
score: 2.0
NoneNo IPR availablePANTHERPTHR11624:SF83SUBFAMILY NOT NAMEDcoord: 21..106
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G008640Cp4.1LG01g08920Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G008640MELO3C014966.2Melon (DHL92) v3.6.1cmamedB781
CmaCh04G008640Bhi11G000776Wax gourdcmawgoB0815
CmaCh04G008640Bhi11G000770Wax gourdcmawgoB0822
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G008640Cucurbita maxima (Rimu)cmacmaB350
CmaCh04G008640Cucumber (Gy14) v1cgycmaB0721
CmaCh04G008640Cucurbita moschata (Rifu)cmacmoB700
CmaCh04G008640Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G008640Wild cucumber (PI 183967)cmacpiB710
CmaCh04G008640Cucumber (Chinese Long) v2cmacuB702
CmaCh04G008640Melon (DHL92) v3.5.1cmameB689
CmaCh04G008640Watermelon (Charleston Gray)cmawcgB614
CmaCh04G008640Watermelon (97103) v1cmawmB660
CmaCh04G008640Cucurbita pepo (Zucchini)cmacpeB714
CmaCh04G008640Bottle gourd (USVL1VR-Ls)cmalsiB692
CmaCh04G008640Cucumber (Gy14) v2cgybcmaB416
CmaCh04G008640Melon (DHL92) v3.6.1cmamedB778
CmaCh04G008640Silver-seed gourdcarcmaB1288
CmaCh04G008640Silver-seed gourdcarcmaB1414
CmaCh04G008640Cucumber (Chinese Long) v3cmacucB0837
CmaCh04G008640Watermelon (97103) v2cmawmbB718