CmaCh04G006500 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G006500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cationic amino acid transporter 8
Location	Cma_Chr04 : 3330610 .. 3332133 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAACACTGATATCTCCGATTTTCTTCGGATTAAGGTGAGTTTCTTTCCAGATGTGTTTAATCTTCTTGATCCAGTTACTGTTGTTGTGCTTCTTGTTACTGATGGTATTCATATGAGTGGAACGAGGAGAACATCTTTCTTGGCATGGATAACTTCTGTGATTAGTAGTTTGCTTATTGTTCTTTTTATTGTGGTTGGATTTGTTGGGGGAGTTCTTCAATTTTGTTACCCCTTTTCCCTTTCGGTGCAAAGGGAGCTGCAGCTGTTGTTTACTGGTTTTTGATATGGTGGCCTCCATTGTTGAGGAAAACAAGCAACCTTCAAGAGATGTACCGGTGGGTTTGATTGGATTAATGTCTATGATCTCTGTGTTCTAGTGCTTGATGGCATTGTCATTATCAATGCTACAAAAATATACCGTGATAAATAGGAATGCGGCATTTTCCGTTGCATTTGATTGAATTGGGATCATAAAGGCTAAATAGTTGGTTCGCATAGTTGCTATCAAGGTAATGACTTCAAGATTGTTGGTGGAATCTTTAGGGCAAGTTCGCATGTAACAGCCCAAGCTGCATATTGTCCTCGTTGGGCTTTCTCTATTGGGCTTCCCTTCAAGGTTTTAAAATAGGTTTCCAAACCCTTACAAGAAATGTTTTGTTCTCCTCTACAATCGATGTGAGATCTCACAATCCACCCTCATAGGGGCCAATGTTCTCATTGGCACACTGCTCAGTGTCCGACTCTAATACCATTTGTAAGAGCCCAAGCCAACTGGTAGCAGATATTGTTCTCTTTGAACTTTCCTTTCTGGGCTTTCCCTCGGTCTGCTAGAGCGAGGTCTCCACACCTTTATAAGGAATGTTTGTTCTCCTCTCCAACTGATGTAGGATCTCACATCGATACACCACTCAGATTGCTAGGGTCCATCTGTTTACACCCCTCTTCGCCTTGGTTCATCCGAAAACGGGAACTCCTGTGTTATGCTACTCTTTTGACAACCATAACTAGTGCAATTGTTGCATTTTTCTCTAGTTTGGGCATCTTGTCAAGTGTTTTTCATCCAGCACGCTAAACATTTTTATGCCTGGCTGTTCCATTGCACTCACAAGACTTGCTACGTTAAGGACACAACACCAAGAAGTGATTATATCAAGTTTATTGCTTGCTTGTTTATCATTTTTGGTTCTTGTATAACGTTGGCAGTAGTTTGAAATTTGGATAGGAAAGGATGGATTGAATATGCTGTACCTGCCTCCTTTTGGTTTCTTAGCCCCCTGGCTATGACGTTCCTTACCAAGTACTGATTGCCATCGGTTTGGAGCGTCCCTCTTGTTCCCCCATTCCCATCACTGTCTATAGGGGCGAACCTCTTATTGGATCTTTGGGTAGTGTGGCATTCTTGAGGTTCTTCATTTGCAGTGCAGTAATGCGTCTGTACTATTTCTTTGTTGGTCTTCTTGCCACATATGATGTAGCCCATCAAGATGGCTTAGGTTCCCAGAATGAGGAGAGAAAATAG

mRNA sequence

ATGCTCAACACTGATATCTCCGATTTTCTTCGGATTAAGGTGAGTTTCTTTCCAGATGTGTTTAATCTTCTTGATCCAGTTACTGTTGTTGTGCTTCTTGTTACTGATGGGAGCTGCAGCTGTTGTTTACTGGTTTTTGATATGGTGGCCTCCATTGTTGAGGAAAACAAGCAACCTTCAAGAGATGTACCGCCCCCTGGCTATGACGTTCCTTACCAAGTACTGATTGCCATCGGTTTGGAGCGTCCCTCTTGTTCCCCCATTCCCATCACTGTCTATAGGGGCGAACCTCTTATTGGATCTTTGGGTAGTGTGGCATTCTTGAGGTTCTTCATTTGCAGTGCAGTAATGCGTCTGTACTATTTCTTTGTTGGTCTTCTTGCCACATATGATGTAGCCCATCAAGATGGCTTAGGTTCCCAGAATGAGGAGAGAAAATAG

Coding sequence (CDS)

ATGCTCAACACTGATATCTCCGATTTTCTTCGGATTAAGGTGAGTTTCTTTCCAGATGTGTTTAATCTTCTTGATCCAGTTACTGTTGTTGTGCTTCTTGTTACTGATGGGAGCTGCAGCTGTTGTTTACTGGTTTTTGATATGGTGGCCTCCATTGTTGAGGAAAACAAGCAACCTTCAAGAGATGTACCGCCCCCTGGCTATGACGTTCCTTACCAAGTACTGATTGCCATCGGTTTGGAGCGTCCCTCTTGTTCCCCCATTCCCATCACTGTCTATAGGGGCGAACCTCTTATTGGATCTTTGGGTAGTGTGGCATTCTTGAGGTTCTTCATTTGCAGTGCAGTAATGCGTCTGTACTATTTCTTTGTTGGTCTTCTTGCCACATATGATGTAGCCCATCAAGATGGCTTAGGTTCCCAGAATGAGGAGAGAAAATAG

Protein sequence

MLNTDISDFLRIKVSFFPDVFNLLDPVTVVVLLVTDGSCSCCLLVFDMVASIVEENKQPSRDVPPPGYDVPYQVLIAIGLERPSCSPIPITVYRGEPLIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK

Homology

[Close]

BLAST of CmaCh04G006500 vs. Swiss-Prot
Match: CAAT8_ARATH (Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQ 136
           LIGSLG VAFLRF IC+ VM LYY FVGL ATYDVAHQ
Sbjct: 542 LIGSLGYVAFLRFIICTMVMLLYYLFVGLHATYDVAHQ 579

[Close]

BLAST of CmaCh04G006500 vs. Swiss-Prot
Match: CAAT5_ARATH (Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.4e-06
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQ 136
           L+GSLG++AF+RF +C+  M LYYF +GL AT+D+AHQ
Sbjct: 526 LMGSLGAMAFVRFGVCTLAMLLYYFLLGLHATFDMAHQ 563

[Close]

BLAST of CmaCh04G006500 vs. TrEMBL
Match: A0A0A0KVH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G075190 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK 147
           LIGSLG+ AFLRFFICSAVM LYY F+GL ATYDVAHQDGLGS+NEE K
Sbjct: 539 LIGSLGTEAFLRFFICSAVMLLYYLFIGLHATYDVAHQDGLGSKNEEIK 587

[Close]

BLAST of CmaCh04G006500 vs. TrEMBL
Match: A0A0J8BDV8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g094170 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.7e-09
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK 147
           LIGSLG +AFLRFFICSAVM +YYFFVG+ ATYDVAH D   S+ E+ +
Sbjct: 553 LIGSLGYLAFLRFFICSAVMLIYYFFVGVHATYDVAHDDVRESKIEQAR 601

[Close]

BLAST of CmaCh04G006500 vs. TrEMBL
Match: A0A165Y6G4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013793 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK 147
           LIGSLG+VAF RFFICSAVM LYY FVG+ ATYDVAH+D L    E ++
Sbjct: 559 LIGSLGAVAFYRFFICSAVMMLYYLFVGVHATYDVAHEDILPEIGEGKE 607

[Close]

BLAST of CmaCh04G006500 vs. TrEMBL
Match: A0A067DRK2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007913mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-08
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEE 145
           LIGSLG +AFLRF ICSAVM +YY  VGL ATYDVAHQ+   S NEE
Sbjct: 537 LIGSLGYLAFLRFIICSAVMLVYYLLVGLHATYDVAHQNQEKSNNEE 583

[Close]

BLAST of CmaCh04G006500 vs. TrEMBL
Match: A0A0V0II68_SOLCH (Putative cationic amino acid transporter 8, vacuolar-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK 147
           LIGSLG  AF RFFICSAVM +YY  VG+ ATYD+AH D   S NEE K
Sbjct: 563 LIGSLGXAAFYRFFICSAVMLIYYVLVGVHATYDIAHLDKQKSVNEEEK 611

[Close]

BLAST of CmaCh04G006500 vs. TAIR10
Match: AT1G17120.1 (AT1G17120.1 cationic amino acid transporter 8)

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-10
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQ 136
           LIGSLG VAFLRF IC+ VM LYY FVGL ATYDVAHQ
Sbjct: 542 LIGSLGYVAFLRFIICTMVMLLYYLFVGLHATYDVAHQ 579

[Close]

BLAST of CmaCh04G006500 vs. TAIR10
Match: AT2G34960.1 (AT2G34960.1 cationic amino acid transporter 5)

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQ 136
           L+GSLG++AF+RF +C+  M LYYF +GL AT+D+AHQ
Sbjct: 526 LMGSLGAMAFVRFGVCTLAMLLYYFLLGLHATFDMAHQ 563

[Close]

BLAST of CmaCh04G006500 vs. NCBI nr
Match: gi|449439077|ref|XP_004137314.1| (PREDICTED: cationic amino acid transporter 8, vacuolar [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 4.2e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK 147
           LIGSLG+ AFLRFFICSAVM LYY F+GL ATYDVAHQDGLGS+NEE K
Sbjct: 539 LIGSLGTEAFLRFFICSAVMLLYYLFIGLHATYDVAHQDGLGSKNEEIK 587

[Close]

BLAST of CmaCh04G006500 vs. NCBI nr
Match: gi|659101774|ref|XP_008451786.1| (PREDICTED: cationic amino acid transporter 8, vacuolar [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 4.6e-12
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK 147
           LIGSLG+ AFLRFFICSA+M LYY FV + ATYDVAHQDGLGS+NEE K
Sbjct: 539 LIGSLGAAAFLRFFICSALMLLYYLFVAVHATYDVAHQDGLGSKNEEIK 587

[Close]

BLAST of CmaCh04G006500 vs. NCBI nr
Match: gi|731365515|ref|XP_010694567.1| (PREDICTED: cationic amino acid transporter 8, vacuolar [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK 147
           LIGSLG +AFLRFFICSAVM +YYFFVG+ ATYDVAH D   S+ E+ +
Sbjct: 553 LIGSLGYLAFLRFFICSAVMLIYYFFVGVHATYDVAHDDVRESKIEQAR 601

[Close]

BLAST of CmaCh04G006500 vs. NCBI nr
Match: gi|1021041064|gb|KZM98845.1| (hypothetical protein DCAR_013793 [Daucus carota subsp. sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEERK 147
           LIGSLG+VAF RFFICSAVM LYY FVG+ ATYDVAH+D L    E ++
Sbjct: 559 LIGSLGAVAFYRFFICSAVMMLYYLFVGVHATYDVAHEDILPEIGEGKE 607

[Close]

BLAST of CmaCh04G006500 vs. NCBI nr
Match: gi|641826422|gb|KDO45644.1| (hypothetical protein CISIN_1g007913mg [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-08
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 98  LIGSLGSVAFLRFFICSAVMRLYYFFVGLLATYDVAHQDGLGSQNEE 145
           LIGSLG +AFLRF ICSAVM +YY  VGL ATYDVAHQ+   S NEE
Sbjct: 537 LIGSLGYLAFLRFIICSAVMLVYYLLVGLHATYDVAHQNQEKSNNEE 583

The following BLAST results are available for this feature:

BLAST of CmaCh04G006500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CAAT8_ARATH	1.1e-08	81.58	Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=2...	[more]
CAAT5_ARATH	6.4e-06	60.53	Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1	[more]

BLAST of CmaCh04G006500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVH5_CUCSA	2.9e-13	83.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G075190 PE=4 SV=1	[more]
A0A0J8BDV8_BETVU	9.7e-09	69.39	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g094170 PE=4 S...	[more]
A0A165Y6G4_DAUCA	1.7e-08	69.39	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013793 PE=4 SV=1	[more]
A0A067DRK2_CITSI	4.8e-08	72.34	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007913mg PE=4 SV=1	[more]
A0A0V0II68_SOLCH	6.3e-08	67.35	Putative cationic amino acid transporter 8, vacuolar-like OS=Solanum chacoense P...	[more]

BLAST of CmaCh04G006500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17120.1	6.0e-10	81.58	cationic amino acid transporter 8	[more]
AT2G34960.1	3.6e-07	60.53	cationic amino acid transporter 5	[more]

BLAST of CmaCh04G006500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439077\|ref\|XP_004137314.1\|	4.2e-13	83.67	PREDICTED: cationic amino acid transporter 8, vacuolar [Cucumis sativus]	[more]
gi\|659101774\|ref\|XP_008451786.1\|	4.6e-12	79.59	PREDICTED: cationic amino acid transporter 8, vacuolar [Cucumis melo]	[more]
gi\|731365515\|ref\|XP_010694567.1\|	1.4e-08	69.39	PREDICTED: cationic amino acid transporter 8, vacuolar [Beta vulgaris subsp. vul...	[more]
gi\|1021041064\|gb\|KZM98845.1\|	2.4e-08	69.39	hypothetical protein DCAR_013793 [Daucus carota subsp. sativus]	[more]
gi\|641826422\|gb\|KDO45644.1\|	6.9e-08	72.34	hypothetical protein CISIN_1g007913mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002293	AA/rel_permease1

Vocabulary: **Biological Process**
Term	Definition
GO:0003333	amino acid transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015171	amino acid transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
biological_process	GO:0009741	response to brassinosteroid
biological_process	GO:0008150	biological_process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015171	amino acid transmembrane transporter activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G006500.1	CmaCh04G006500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002293	Amino acid/polyamine transporter I	PANTHER	PTHR11785	AMINO ACID TRANSPORTER	coord: 98..136 score: 6.9
None	No IPR available	PANTHER	PTHR11785:SF273	CATIONIC AMINO ACID TRANSPORTER 8, VACUOLAR	coord: 98..136 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G006500	CmoCh16G004880	Cucurbita moschata (Rifu)	cmacmoB703
CmaCh04G006500	Lsi07G008560	Bottle gourd (USVL1VR-Ls)	cmalsiB695
CmaCh04G006500	Cp4.1LG14g03400	Cucurbita pepo (Zucchini)	cmacpeB717
CmaCh04G006500	Cp4.1LG01g00690	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G006500	MELO3C016149.2	Melon (DHL92) v3.6.1	cmamedB790
CmaCh04G006500	Cla97C07G137150	Watermelon (97103) v2	cmawmbB782
CmaCh04G006500	Bhi01G002448	Wax gourd	cmawgoB0847
CmaCh04G006500	Carg13101	Silver-seed gourd	carcmaB0055
CmaCh04G006500	Carg11377	Silver-seed gourd	carcmaB0927

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G006500	CmaCh16G004520	Cucurbita maxima (Rimu)	cmacmaB353

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G006500	Cucumber (Chinese Long) v3	cmacucB0841
CmaCh04G006500	Cucumber (Gy14) v1	cgycmaB0765
CmaCh04G006500	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G006500	Wild cucumber (PI 183967)	cmacpiB714
CmaCh04G006500	Cucumber (Chinese Long) v2	cmacuB708
CmaCh04G006500	Melon (DHL92) v3.5.1	cmameB701
CmaCh04G006500	Watermelon (Charleston Gray)	cmawcgB675
CmaCh04G006500	Watermelon (97103) v1	cmawmB692
CmaCh04G006500	Bottle gourd (USVL1VR-Ls)	cmalsiB702
CmaCh04G006500	Cucumber (Gy14) v2	cgybcmaB541