CmaCh04G005280 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G005280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 2689348 .. 2689668 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTGGGCTCAAAGACCGGTCCGTTTGACTATCCAAATCCGGTTAATGGTTATCCAATAAACGGGAGCCACGTCGGCAGTTTGACGCGGCTATCCAAATGACAAATATACCCTTATATAGTCTTTAGAATAACGATAATACCTTCTATTGGCCATGCGGTTTTTCCTTCCACTGCGGAGTCTTCTCCATCGTCGCCGAGCTTGAGAGGCTCACTTTCCAAACTTCATTCTCTCGCCAATAGTCGGTCTCTCATTTTTCACCCATCTCTTTCCGAGACCATCGATGGTGGAGGCTCTAAATTTGATCGATTGAACTGA

mRNA sequence

ATGGTAGTGGGCTCAAAGACCGTCTTTAGAATAACGATAATACCTTCTATTGGCCATGCGGTTTTTCCTTCCACTGCGGAGTCTTCTCCATCGTCGCCGAGCTTGAGAGGCTCACTTTCCAAACTTCATTCTCTCGCCAATAGTCGGTCTCTCATTTTTCACCCATCTCTTTCCGAGACCATCGATGGTGGAGGCTCTAAATTTGATCGATTGAACTGA

Coding sequence (CDS)

ATGGTAGTGGGCTCAAAGACCGTCTTTAGAATAACGATAATACCTTCTATTGGCCATGCGGTTTTTCCTTCCACTGCGGAGTCTTCTCCATCGTCGCCGAGCTTGAGAGGCTCACTTTCCAAACTTCATTCTCTCGCCAATAGTCGGTCTCTCATTTTTCACCCATCTCTTTCCGAGACCATCGATGGTGGAGGCTCTAAATTTGATCGATTGAACTGA

Protein sequence

MVVGSKTVFRITIIPSIGHAVFPSTAESSPSSPSLRGSLSKLHSLANSRSLIFHPSLSETIDGGGSKFDRLN
Homology
[Close]
BLAST of CmaCh04G005280 vs. TrEMBL
Match: A0A0A0L9E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219730 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-09
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 1 

Query: 11 ITIIPSIGHAVFPSTAESSPSSPSLRGSLSKLHSLANSRSLIFHPSLSETIDGGG 66
          +T IP   HAVFPSTAESSPSSPSLRGSL KLH+L N RS I HP   E I+G G
Sbjct: 1  MTTIPLTDHAVFPSTAESSPSSPSLRGSLWKLHTLGNLRSPIHHPVSFEPINGNG 55

[Close]
BLAST of CmaCh04G005280 vs. NCBI nr
Match: gi|700202456|gb|KGN57589.1| (hypothetical protein Csa_3G219730 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-09
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 1 

Query: 11 ITIIPSIGHAVFPSTAESSPSSPSLRGSLSKLHSLANSRSLIFHPSLSETIDGGG 66
          +T IP   HAVFPSTAESSPSSPSLRGSL KLH+L N RS I HP   E I+G G
Sbjct: 1  MTTIPLTDHAVFPSTAESSPSSPSLRGSLWKLHTLGNLRSPIHHPVSFEPINGNG 55

The following BLAST results are available for this feature:
BLAST of CmaCh04G005280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G005280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9E1_CUCSA2.1e-0969.09Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219730 PE=4 SV=1[more]
BLAST of CmaCh04G005280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G005280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202456|gb|KGN57589.1|3.1e-0969.09hypothetical protein Csa_3G219730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G005280.1CmaCh04G005280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G005280CSPI03G19020Wild cucumber (PI 183967)cmacpiB705
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G005280Cucurbita maxima (Rimu)cmacmaB351
CmaCh04G005280Cucumber (Gy14) v1cgycmaB0012
CmaCh04G005280Cucurbita moschata (Rifu)cmacmoB701
CmaCh04G005280Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G005280Cucumber (Chinese Long) v2cmacuB697
CmaCh04G005280Melon (DHL92) v3.5.1cmameB691
CmaCh04G005280Watermelon (Charleston Gray)cmawcgB659
CmaCh04G005280Watermelon (97103) v1cmawmB703
CmaCh04G005280Cucurbita pepo (Zucchini)cmacpeB715
CmaCh04G005280Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G005280Bottle gourd (USVL1VR-Ls)cmalsiB690
CmaCh04G005280Cucumber (Gy14) v2cgybcmaB410
CmaCh04G005280Melon (DHL92) v3.6.1cmamedB777
CmaCh04G005280Silver-seed gourdcarcmaB0925
CmaCh04G005280Cucumber (Chinese Long) v3cmacucB0829
CmaCh04G005280Watermelon (97103) v2cmawmbB763
CmaCh04G005280Wax gourdcmawgoB0852