CSPI03G19020 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G19020
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 14723869 .. 14724063 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACAATACCTTTGACTGACCATGCGGTTTTTCCTTCCACTGCGGAGTCTTCACCATCGTCGCCGAGCTTGAGAGGCTCACTTTGGAAACTTCATACTCTCGGCAACCTTCGGTCTCCGATTCATCACCCAGTTTCTTTCGAGCCCATCAATGGTGAAGGCTCTGTATTTCAACAATTGAAGTTAAGATCG

mRNA sequence

ATGACGACAATACCTTTGACTGACCATGCGGTTTTTCCTTCCACTGCGGAGTCTTCACCATCGTCGCCGAGCTTGAGAGGCTCACTTTGGAAACTTCATACTCTCGGCAACCTTCGGTCTCCGATTCATCACCCAGTTTCTTTCGAGCCCATCAATGGTGAAGGCTCTGTATTTCAACAATTGAAGTTAAGATCG

Coding sequence (CDS)

ATGACGACAATACCTTTGACTGACCATGCGGTTTTTCCTTCCACTGCGGAGTCTTCACCATCGTCGCCGAGCTTGAGAGGCTCACTTTGGAAACTTCATACTCTCGGCAACCTTCGGTCTCCGATTCATCACCCAGTTTCTTTCGAGCCCATCAATGGTGAAGGCTCTGTATTTCAACAATTGAAGTTAAGATCG
Homology
[Close]
BLAST of CSPI03G19020 vs. TrEMBL
Match: A0A0A0L9E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219730 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1  MTTIPLTDHAVFPSTAESSPSSPSLRGSLWKLHTLGNLRSPIHHPVSFEPINGEGSVFQQ 60
          MTTIPLTDHAVFPSTAESSPSSPSLRGSLWKLHTLGNLRSPIHHPVSFEPING G +F +
Sbjct: 1  MTTIPLTDHAVFPSTAESSPSSPSLRGSLWKLHTLGNLRSPIHHPVSFEPINGNG-IFAE 60

Query: 61 LK 63
          ++
Sbjct: 61 IR 61

[Close]
BLAST of CSPI03G19020 vs. NCBI nr
Match: gi|700202456|gb|KGN57589.1| (hypothetical protein Csa_3G219730 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1  MTTIPLTDHAVFPSTAESSPSSPSLRGSLWKLHTLGNLRSPIHHPVSFEPINGEGSVFQQ 60
          MTTIPLTDHAVFPSTAESSPSSPSLRGSLWKLHTLGNLRSPIHHPVSFEPING G +F +
Sbjct: 1  MTTIPLTDHAVFPSTAESSPSSPSLRGSLWKLHTLGNLRSPIHHPVSFEPINGNG-IFAE 60

Query: 61 LK 63
          ++
Sbjct: 61 IR 61

The following BLAST results are available for this feature:
BLAST of CSPI03G19020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G19020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9E1_CUCSA1.1e-2388.71Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219730 PE=4 SV=1[more]
BLAST of CSPI03G19020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G19020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202456|gb|KGN57589.1|1.5e-2388.71hypothetical protein Csa_3G219730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
biological_process GO:0097359 UDP-glucosylation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G19020.1CSPI03G19020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G19020CmaCh04G005280Cucurbita maxima (Rimu)cmacpiB705
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G19020Cucurbita moschata (Rifu)cmocpiB315
CSPI03G19020Cucurbita moschata (Rifu)cmocpiB698
CSPI03G19020Cucumber (Chinese Long) v2cpicuB120
CSPI03G19020Melon (DHL92) v3.5.1cpimeB241
CSPI03G19020Watermelon (Charleston Gray)cpiwcgB237
CSPI03G19020Watermelon (97103) v1cpiwmB242
CSPI03G19020Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G19020Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G19020Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G19020Melon (DHL92) v3.6.1cpimedB239
CSPI03G19020Cucumber (Gy14) v2cgybcpiB110
CSPI03G19020Silver-seed gourdcarcpiB0685
CSPI03G19020Cucumber (Chinese Long) v3cpicucB144
CSPI03G19020Watermelon (97103) v2cpiwmbB221
CSPI03G19020Wax gourdcpiwgoB283
CSPI03G19020Cucumber (Gy14) v1cgycpiB003
CSPI03G19020Cucurbita maxima (Rimu)cmacpiB326