CmaCh04G005230 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G005230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionrRNA N-glycosidase
LocationCma_Chr04 : 2644555 .. 2645412 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGATGAGACAAGTCCTGCTCTGCATTGCCCTGGCATTCTCCCTCGCCATAGCGGCGCCCTCTGAGTACGGAGCGTTCGGAGGACGCACACATCTTGTTGGTCGAGATGGGCTGTGTTTAGACACCATGTTGCTTTCCGGATATTATCCTCAAACTGACTTATCCCAATGCCAACCAAGGAAACTGAGCCAGCTATGGACCATCCTTGAAGATGGCACGATTCGAGCCAGTGATGTTAGATACTGTTTGGTTCCTAAAACTCAATTCATTGGACCCGTTGGACCCAATGTCGTAGTAATGGACTGCACAAAAGAGGTAAGACACGACATGAAATGGACCAAAAAGAAGGATGGAACCATACACCACGATGAGTCGGGGCTTGTCCTGACGGCGAAACCAGGCAGGATGGTGACATTGGAAGCCAATGAAGACGCGCCATCACAAAGCTGGGAAGCCACGGAGAGCCTCTACCCAATGGTGGCTAATATCAAATGGCTTGATAACTTGTGTTTGAAATCTAGAGAAGGTGAAAATTCGTATGTGACGTTGAACGAGTGTAGCCGAGATGATAAGAACCAACGATGGGCGTTGTATGGGGACGGCACCATTCGACAAAATGAGTATAGACACTTGTGCTTGACTTCGTCCGAAAGGAATTATGGTGCGCTGGTGGTTGTGTCTAGGTGCGCTGACAAGCCACAGCAGCGTTGGGGGCTTGCGGAAGACAACACCATCAACCATCCCAACACCAACTTGGTCATGGATGTGCATAGGGAGGTGCCTCTGTTGCCGCCCATGATCGTGGTTGACAAGCATGACGGCGCTCCTAGCCAACGATGGTCCATTTACTGA

mRNA sequence

ATGGAGAAGATGAGACAAGTCCTGCTCTGCATTGCCCTGGCATTCTCCCTCGCCATAGCGGCGCCCTCTGAGTACGGAGCGTTCGGAGGACGCACACATCTTGTTGGTCGAGATGGGCTGTGTTTAGACACCATGTTGCTTTCCGGATATTATCCTCAAACTGACTTATCCCAATGCCAACCAAGGAAACTGAGCCAGCTATGGACCATCCTTGAAGATGGCACGATTCGAGCCAGTGATGTTAGATACTGTTTGGTTCCTAAAACTCAATTCATTGGACCCGTTGGACCCAATGTCGTAGTAATGGACTGCACAAAAGAGGTAAGACACGACATGAAATGGACCAAAAAGAAGGATGGAACCATACACCACGATGAGTCGGGGCTTGTCCTGACGGCGAAACCAGGCAGGATGGTGACATTGGAAGCCAATGAAGACGCGCCATCACAAAGCTGGGAAGCCACGGAGAGCCTCTACCCAATGGTGGCTAATATCAAATGGCTTGATAACTTGTGTTTGAAATCTAGAGAAGGTGAAAATTCGTATGTGACGTTGAACGAGTGTAGCCGAGATGATAAGAACCAACGATGGGCGTTGTATGGGGACGGCACCATTCGACAAAATGAGTATAGACACTTGTGCTTGACTTCGTCCGAAAGGAATTATGGTGCGCTGGTGGTTGTGTCTAGGTGCGCTGACAAGCCACAGCAGCGTTGGGGGCTTGCGGAAGACAACACCATCAACCATCCCAACACCAACTTGGTCATGGATGTGCATAGGGAGGTGCCTCTGTTGCCGCCCATGATCGTGGTTGACAAGCATGACGGCGCTCCTAGCCAACGATGGTCCATTTACTGA

Coding sequence (CDS)

ATGGAGAAGATGAGACAAGTCCTGCTCTGCATTGCCCTGGCATTCTCCCTCGCCATAGCGGCGCCCTCTGAGTACGGAGCGTTCGGAGGACGCACACATCTTGTTGGTCGAGATGGGCTGTGTTTAGACACCATGTTGCTTTCCGGATATTATCCTCAAACTGACTTATCCCAATGCCAACCAAGGAAACTGAGCCAGCTATGGACCATCCTTGAAGATGGCACGATTCGAGCCAGTGATGTTAGATACTGTTTGGTTCCTAAAACTCAATTCATTGGACCCGTTGGACCCAATGTCGTAGTAATGGACTGCACAAAAGAGGTAAGACACGACATGAAATGGACCAAAAAGAAGGATGGAACCATACACCACGATGAGTCGGGGCTTGTCCTGACGGCGAAACCAGGCAGGATGGTGACATTGGAAGCCAATGAAGACGCGCCATCACAAAGCTGGGAAGCCACGGAGAGCCTCTACCCAATGGTGGCTAATATCAAATGGCTTGATAACTTGTGTTTGAAATCTAGAGAAGGTGAAAATTCGTATGTGACGTTGAACGAGTGTAGCCGAGATGATAAGAACCAACGATGGGCGTTGTATGGGGACGGCACCATTCGACAAAATGAGTATAGACACTTGTGCTTGACTTCGTCCGAAAGGAATTATGGTGCGCTGGTGGTTGTGTCTAGGTGCGCTGACAAGCCACAGCAGCGTTGGGGGCTTGCGGAAGACAACACCATCAACCATCCCAACACCAACTTGGTCATGGATGTGCATAGGGAGGTGCCTCTGTTGCCGCCCATGATCGTGGTTGACAAGCATGACGGCGCTCCTAGCCAACGATGGTCCATTTACTGA

Protein sequence

MEKMRQVLLCIALAFSLAIAAPSEYGAFGGRTHLVGRDGLCLDTMLLSGYYPQTDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQFIGPVGPNVVVMDCTKEVRHDMKWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKWLDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVVVSRCADKPQQRWGLAEDNTINHPNTNLVMDVHREVPLLPPMIVVDKHDGAPSQRWSIY
Homology
[Close]
BLAST of CmaCh04G005230 vs. Swiss-Prot
Match: NIGB_SAMNI (Nigrin b OS=Sambucus nigra PE=1 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-34
Identity = 91/255 (35.69%), Postives = 132/255 (51.76%), Query Frame = 1 

Query: 33  HLVGRDGLCLDTMLLSGYYPQTDLSQCQP--RKLSQLWTILEDGTIRASDVRYCLVPKTQ 92
           ++VGRDGLC+D    +GY       Q  P   + +Q WT   D TIR+  +  C+     
Sbjct: 311 NIVGRDGLCVDVR--NGYDTDGTPLQLWPCGTQRNQRWTFDSDDTIRS--MGKCMTANGL 370

Query: 93  FIGPVGPNVVVMDCTKEVRHDMKWTKKKDGTIHHDESGLVLTAKPGRMVT---LEANEDA 152
                G N+V+ +C+    + +KW    DG+I +  SGLV+TA      T   LE N  A
Sbjct: 371 ---NNGSNIVIFNCSTAAENAIKWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYA 430

Query: 153 PSQSWEATESLYPMVANIKWLDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQ 212
            SQ W  T ++ P+VA+I     +CL+S  GEN+ V + +C      Q+WALYGD TIR 
Sbjct: 431 ASQGWTVTNNVKPIVASIVGYKEMCLQSN-GENNGVWMEDCEATSLQQQWALYGDRTIRV 490

Query: 213 NEYRHLCLTSSERNYGALVVVSRCADKPQQRWGLAEDNTINHPNTNLVMDVHREVPLLPP 272
           N  R LC+T++  N   L+++ +C   P QRW    D  I +P +  VMDV      L  
Sbjct: 491 NSTRGLCVTTNGYNSKDLIIILKCQGLPSQRWFFNSDGAIVNPKSRHVMDVRASNVSLRE 550

Query: 273 MIVVDKHDGAPSQRW 283
           +I+     G P+Q+W
Sbjct: 551 IIIFPA-TGNPNQQW 556

[Close]
BLAST of CmaCh04G005230 vs. Swiss-Prot
Match: ABRC_ABRPR (Abrin-c OS=Abrus precatorius PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-30
Identity = 87/254 (34.25%), Postives = 136/254 (53.54%), Query Frame = 1 

Query: 36  GRDGLCLDTMLLSGYYPQTDLS--QCQPR-KLSQLWTILEDGTIRASDVRYCLVPKTQFI 95
           GRDG+C+D +   GY+    +   +C+ R + +QLWT+  D TIR++    CL   T+  
Sbjct: 315 GRDGMCVD-VYDDGYHNGNRIIAWKCKDRLEENQLWTLKSDKTIRSNGK--CLT--TEGY 374

Query: 96  GPVGPNVVVMDCTKEVRHDMKWTKKKDGTIHHDESGLVLTAKPGRM---VTLEANEDAPS 155
            P G  V++ DCT  V     W    +GTI + +S LVL+A+   M   +T++ NE    
Sbjct: 375 AP-GNYVMIYDCTSAVAEATYWEIWDNGTIINPKSALVLSAESSSMGGTLTVQTNEYLMR 434

Query: 156 QSWEATESLYPMVANIKWLDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNE 215
           Q W    +  P V +I    +LC+   + + S V L +C  + K Q+WALY DG+IR  +
Sbjct: 435 QGWRTGNNTSPFVTSISGYSDLCM---QAQGSNVWLADCDNNKKEQQWALYTDGSIRSVQ 494

Query: 216 YRHLCLTSSERNYGALVVVSRCADK-PQQRWGLAEDNTINHPNTNLVMDVHREVPLLPPM 275
             + CLTS +   G+ +V+  C++    QRW    D +I + + ++VMDV R  P L  +
Sbjct: 495 NTNNCLTSKDHKQGSPIVLMACSNGWASQRWLFKNDGSIYNLHDDMVMDVKRSDPSLKEI 554

Query: 276 IVVDKHDGAPSQRW 283
           I+   H G P+Q W
Sbjct: 555 ILHPYH-GKPNQIW 558

[Close]
BLAST of CmaCh04G005230 vs. Swiss-Prot
Match: SGSL_TRIAN (Seed lectin (Fragments) OS=Trichosanthes anguina PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 4.3e-30
Identity = 85/262 (32.44%), Postives = 133/262 (50.76%), Query Frame = 1 

Query: 32  THLVGRDGLCLDTM-LLSGYYPQTDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQ 91
           T + GRD LC+D    L+    +  L  C  ++++Q WT   DGT+R+  +  CL     
Sbjct: 265 TRISGRDALCVDVAGALTSDGSRLILYPCG-QQVNQKWTFHSDGTVRS--LGKCLATNNS 324

Query: 92  FIGPVGPNVVVMDCTKEVRHDMKWTKKKDGTIHHDE-SGLVLTAKPGRM---VTLEANED 151
             G +   VV+ DC+K    D+ W     GTI +     L LT+        +T+E N  
Sbjct: 325 KFGNL---VVIYDCSKLAAEDISWDVSVGGTIMNPNYEDLALTSNKATRSTNLTMEVNTY 384

Query: 152 APSQSWEATESLYPMVANIKWLDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIR 211
           + SQ W     + P++ +I  LD++CL++ +G N+ + L EC  + + Q WALY DGTIR
Sbjct: 385 SASQGWRVGNYVQPIIGSIVGLDDMCLEATDG-NTNMWLEECVPNQREQSWALYSDGTIR 444

Query: 212 QNEYRHLCLTSSERNYG--ALVVVSRCADKPQQRWGLAEDNTINHP-NTNLVMDVHREVP 271
            ++ R LC+T+S   Y    ++ +  C     QRW    D +I+ P N  L MDV R   
Sbjct: 445 VDDNRELCVTASSSTYDNWKVITILNCDGSNNQRWVFLADGSISTPGNQRLAMDVARSDV 504

Query: 272 LLPPMIVVDKHDGAPSQRWSIY 286
            L  +I+   H G  +Q+W ++
Sbjct: 505 DLKKIILHRPH-GDLNQQWVLF 518

[Close]
BLAST of CmaCh04G005230 vs. Swiss-Prot
Match: RIP1_SAMNI (Ribosome-inactivating protein SNAI' OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.3e-30
Identity = 88/257 (34.24%), Postives = 130/257 (50.58%), Query Frame = 1 

Query: 36  GRDGLCLDTMLLSGYYPQ---TDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQFI 95
           GRDG C +    +G         LS C  +  +Q WT   DGTI++  +  CL   +   
Sbjct: 323 GRDGFCAEVK--NGDEKDGTPVQLSSCGEQS-NQQWTFSTDGTIQS--LGKCLTTSS--- 382

Query: 96  GPVGPNVVVMDCTKEVRHDMKWTKKKDGTIHHDESGLVLTAKP---GRMVTLEANEDAPS 155
                +V++ +C        KW    DGTI +  SGLVLTA     G +V+LE N  A  
Sbjct: 383 -----SVMIYNCKVVPPESTKWVVSIDGTITNPRSGLVLTAPKAAEGTLVSLEKNVHAAR 442

Query: 156 QSWEATESLYPMVANIKWLDNLCLKSREGENSYVTLNECS---RDDKNQRWALYGDGTIR 215
           Q W    ++ P+V  I   + +CL++  G N  V+L +CS       +Q+WALYGDGTIR
Sbjct: 443 QGW-IVGNVEPLVTFIVGYEQMCLETNPGNND-VSLGDCSVKSASKVDQKWALYGDGTIR 502

Query: 216 QNEYRHLCLTSSERNYGALVVVSRCADKPQQRWGLAEDNTINHPNTNLVMDV-HREVPLL 275
            N  R LC+TS  ++    +++ +C     QRW    D TI++P++ LVM V   +VPL 
Sbjct: 503 VNNDRSLCVTSEGKSSNEPIIILKCLGWANQRWVFNTDGTISNPDSKLVMHVDQNDVPL- 562

Query: 276 PPMIVVDKHDGAPSQRW 283
              I++    G  +Q+W
Sbjct: 563 -RKIILSHPSGTSNQQW 562

[Close]
BLAST of CmaCh04G005230 vs. Swiss-Prot
Match: ABRB_ABRPR (Abrin-b OS=Abrus precatorius PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-29
Identity = 86/254 (33.86%), Postives = 135/254 (53.15%), Query Frame = 1 

Query: 36  GRDGLCLDTMLLSGYYPQTDLS--QCQPR-KLSQLWTILEDGTIRASDVRYCLVPKTQFI 95
           GR+G+C+D +   GY+    +   +C+ R + +QLWT+  D TIR++    CL   T+  
Sbjct: 280 GRNGMCVD-VYDDGYHNGNRIIAWKCKDRLEENQLWTLKSDKTIRSNGK--CLT--TEGY 339

Query: 96  GPVGPNVVVMDCTKEVRHDMKWTKKKDGTIHHDESGLVLTAKPGRM---VTLEANEDAPS 155
            P G  V++ DCT  V     W    +GTI + +S LVL+A+   M   +T++ NE    
Sbjct: 340 AP-GNYVMIYDCTSAVAEATYWEIWDNGTIINPKSALVLSAESSSMGGTLTVQTNEYLMR 399

Query: 156 QSWEATESLYPMVANIKWLDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNE 215
           Q W    +  P V +I    +LC+   + + S V L  C  + K Q+WALY DG+IR  +
Sbjct: 400 QGWRTGNNTSPFVTSISGYSDLCM---QAQGSNVWLAYCDNNKKEQQWALYTDGSIRSVQ 459

Query: 216 YRHLCLTSSERNYGALVVVSRCADK-PQQRWGLAEDNTINHPNTNLVMDVHREVPLLPPM 275
             + CLTS +   G+ +V+  C++    QRW    D +I + + ++VMDV R  P L  +
Sbjct: 460 NTNNCLTSKDHKQGSPIVLMACSNGWASQRWLFRNDGSIYNLHDDMVMDVKRSDPSLKEI 519

Query: 276 IVVDKHDGAPSQRW 283
           I+   H G P+Q W
Sbjct: 520 ILHPYH-GKPNQIW 523

[Close]
BLAST of CmaCh04G005230 vs. TrEMBL
Match: A0A0A0L756_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219180 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.4e-72
Identity = 157/296 (53.04%), Postives = 201/296 (67.91%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSL----AIAAPSEYG--AFGGRTHLVGRDGLCLDTM--LLSGYYPQTD 63
           M++++L I +AFSL    A+A PS+YG     G THLVGRDGLCL+       G    T 
Sbjct: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60

Query: 64  LSQC-QPRKLSQLWTILEDGTIRASDVRYCLVP--KTQFIGPVGPNVVVMDCTKEVRHDM 123
           LS C + +K +QLWT+L+D TIR  + RYCLV      FI     NVVV +C KE   + 
Sbjct: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFI----TNVVVSECAKEPHSNK 120

Query: 124 KWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKWLDNLC 183
           KW  K+D TI H  SG+VLT      VT++ N++APSQSWEAT+SL PMVANIKWL+NLC
Sbjct: 121 KWIHKEDRTIVHVGSGMVLTGN-SNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLC 180

Query: 184 LKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVVVSRCA 243
           L+S +  N YV L+ C+ ++K+Q W+LYGDGTIR++  R+ CLT SE+++G  V VS+C 
Sbjct: 181 LQSTKDSN-YVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLT-SEQDFGRFVAVSKCE 240

Query: 244 DKPQQRWGL-AEDNTINHPNTNLVMDVHREVPL--LPPMIVVDKHDGAPSQRWSIY 286
           DKPQQRWGL AEDNTINHPNT++VMDV   VP   LP  +V +  DG  +QRW IY
Sbjct: 241 DKPQQRWGLGAEDNTINHPNTDMVMDV-LSVPFDDLPLAVVTNHRDGTATQRWIIY 288

[Close]
BLAST of CmaCh04G005230 vs. TrEMBL
Match: A0A0A0LAC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G217140 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.6e-66
Identity = 148/298 (49.66%), Postives = 193/298 (64.77%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSLA----IAAPSEYG---AFGG---RTHLVGRDGLCLDTMLLSGYYP- 63
           M++++L I +AFSL     IA P  YG    +GG    THLVGRDGLCL+ +LL  Y P 
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMVLLRSYKPA 60

Query: 64  ----QTDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQFIGPVGPNVVVMDCTKEV 123
                T L  C  +K +QLWT++ DGTIR  + R+CL     F G +    VV +C K  
Sbjct: 61  GINFPTRLLPCDEKKQTQLWTVVGDGTIRPMNDRFCLAADV-FYGVIN-KAVVSECGKVS 120

Query: 124 RHDMKWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKWL 183
             + +W  K DGTI   ES +VLT      VTL++ +  PSQSWE TESL PMVANI+WL
Sbjct: 121 DSNKQWIHKNDGTIALAESRMVLTG-DSDYVTLQSIKYTPSQSWEVTESLNPMVANIEWL 180

Query: 184 DNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVVV 243
           +NLCL+S + ++S V LN C+   K QRWALY DGTIRQ+  R+ CLT SE+NY   VVV
Sbjct: 181 NNLCLQSTD-DSSNVGLNGCNTYTKYQRWALYADGTIRQHVNRNYCLT-SEQNYDRSVVV 240

Query: 244 SRCADKPQQRWGL-AEDNTINHPNTNLVMDVHREVPLLPPMIVVDKH-DGAPSQRWSI 285
           S+C DKPQQRW L A+D+TI+HPNTN+V+DV   +    P+++V  H DG+ SQRW++
Sbjct: 241 SKCEDKPQQRWSLNAKDSTIDHPNTNMVLDVLNVLDSASPLVIVTNHPDGSASQRWTM 293

[Close]
BLAST of CmaCh04G005230 vs. TrEMBL
Match: Q9SLV9_CUCSA (XSP30 OS=Cucumis sativus GN=XSP30 PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.9e-65
Identity = 148/300 (49.33%), Postives = 201/300 (67.00%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSL----AIAAPSEYG---AFGG---RTHLVGRDGLCLDTMLLSGYYPQ 63
           M++++L I +AFSL    AIA P  YG    +GG    THLVGRDGLCL+   +S +Y  
Sbjct: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLE---MSPWYKP 60

Query: 64  ------TDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQFIGPVGPNVVVMDCTKE 123
                 T LS C  +K +QLWTI+ DGTIR  + ++CL  +  F G +    VV +C K 
Sbjct: 61  AGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEV-FYGVIN-KAVVSECGKV 120

Query: 124 VRHDMKWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKW 183
              + KWT+K DGTI   +S +VLT      VTL++N+  PSQSWE TESL  MVANI+W
Sbjct: 121 SDPNKKWTQKNDGTIALVDSRMVLTGDLD-YVTLQSNKYTPSQSWEVTESLNSMVANIEW 180

Query: 184 LDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVV 243
           L+NLCL+S + ++S+V LN C+ D+K QRWALY DGTIRQ+  ++ CLT S++++G  VV
Sbjct: 181 LNNLCLQSTD-DSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLT-SDQDFGRFVV 240

Query: 244 VSRCADKPQQRWGL-AEDNTINHPNTNLVMDVHREVP--LLPPMIVVDKHDGAPSQRWSI 285
           VS+C DKPQQRW L A+D TI+HPNT++V+DV   VP    P ++V ++ DG+ SQRW+I
Sbjct: 241 VSKCEDKPQQRWSLDAKDYTIDHPNTDMVLDVF-SVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of CmaCh04G005230 vs. TrEMBL
Match: A0A0A0L9D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G217160 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 8.3e-65
Identity = 147/300 (49.00%), Postives = 200/300 (66.67%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSLA----IAAPSEYG---AFGG---RTHLVGRDGLCLDTMLLSGYYPQ 63
           M++++L I +AFSL     IA P  YG    +GG    THLVGRDGLCL+   +S +Y  
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLE---MSPWYKP 60

Query: 64  ------TDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQFIGPVGPNVVVMDCTKE 123
                 T LS C  +K +QLWTI+ DGTIR  + ++CL  +  F G +    VV +C K 
Sbjct: 61  AGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEV-FYGVIN-KAVVSECGKV 120

Query: 124 VRHDMKWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKW 183
              + KWT+K DGTI   +S +VLT      VTL++N+  PSQSWE TESL  MVANI+W
Sbjct: 121 SDPNKKWTQKNDGTIALVDSRMVLTGDLD-YVTLQSNKYTPSQSWEVTESLNSMVANIEW 180

Query: 184 LDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVV 243
           L+NLCL+S + ++S+V LN C+ D+K QRWALY DGTIRQ+  ++ CLT S++++G  VV
Sbjct: 181 LNNLCLQSTD-DSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLT-SDQDFGRFVV 240

Query: 244 VSRCADKPQQRWGL-AEDNTINHPNTNLVMDVHREVP--LLPPMIVVDKHDGAPSQRWSI 285
           VS+C DKPQQRW L A+D TI+HPNT++V+DV   VP    P ++V ++ DG+ SQRW+I
Sbjct: 241 VSKCEDKPQQRWSLDAKDYTIDHPNTDMVLDVF-SVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of CmaCh04G005230 vs. TrEMBL
Match: Q58A89_SAMRA (Lectin OS=Sambucus racemosa subsp. sieboldiana GN=LecSSA-b-3a PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.9e-34
Identity = 91/255 (35.69%), Postives = 136/255 (53.33%), Query Frame = 1 

Query: 33  HLVGRDGLCLDTMLLSGYYPQTDLSQCQP--RKLSQLWTILEDGTIRASDVRYCLVPKTQ 92
           +++GR+GLC+D    +GY       Q  P  R+ +Q WT  EDGTIR+  +  C+     
Sbjct: 21  NIIGRNGLCVDVR--NGYSTDGTPIQLWPCGRQRNQQWTFYEDGTIRS--MGKCMTANGL 80

Query: 93  FIGPVGPNVVVMDCTKEVRHDMKWTKKKDGTIHHDESGLVLTAKPGRMVT---LEANEDA 152
                G N+++ +C+  V + +KW    DG+I +  SGLV+TA      T   LE N  A
Sbjct: 81  ---NSGSNIMIFNCSTAVENAIKWEVTIDGSIINLSSGLVMTAPSAASRTILLLENNIYA 140

Query: 153 PSQSWEATESLYPMVANIKWLDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQ 212
            SQ W  +  + P+VA+I     +CL++  GEN+ V + +C      Q+WAL+GD TIR 
Sbjct: 141 ASQGWTVSNDVKPIVASIVGYKEMCLQAN-GENNGVWMEDCEVTSLQQQWALFGDRTIRV 200

Query: 213 NEYRHLCLTSSERNYGALVVVSRCADKPQQRWGLAEDNTINHPNTNLVMDVHREVPLLPP 272
           N  R LC+TS+  N   L++  +C   P QRW    +  I +PN+ LVMDV      L  
Sbjct: 201 NSSRGLCVTSNGYNSKDLIITLKCQGLPSQRWFFNSNGAIVNPNSTLVMDVRASNVSLRE 260

Query: 273 MIVVDKHDGAPSQRW 283
            I++    G P+Q+W
Sbjct: 261 -IIISPATGNPNQQW 266

[Close]
BLAST of CmaCh04G005230 vs. NCBI nr
Match: gi|449457105|ref|XP_004146289.1| (PREDICTED: nigrin b-like [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 3.5e-72
Identity = 157/296 (53.04%), Postives = 201/296 (67.91%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSL----AIAAPSEYG--AFGGRTHLVGRDGLCLDTM--LLSGYYPQTD 63
           M++++L I +AFSL    A+A PS+YG     G THLVGRDGLCL+       G    T 
Sbjct: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60

Query: 64  LSQC-QPRKLSQLWTILEDGTIRASDVRYCLVP--KTQFIGPVGPNVVVMDCTKEVRHDM 123
           LS C + +K +QLWT+L+D TIR  + RYCLV      FI     NVVV +C KE   + 
Sbjct: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFI----TNVVVSECAKEPHSNK 120

Query: 124 KWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKWLDNLC 183
           KW  K+D TI H  SG+VLT      VT++ N++APSQSWEAT+SL PMVANIKWL+NLC
Sbjct: 121 KWIHKEDRTIVHVGSGMVLTGN-SNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLC 180

Query: 184 LKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVVVSRCA 243
           L+S +  N YV L+ C+ ++K+Q W+LYGDGTIR++  R+ CLT SE+++G  V VS+C 
Sbjct: 181 LQSTKDSN-YVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLT-SEQDFGRFVAVSKCE 240

Query: 244 DKPQQRWGL-AEDNTINHPNTNLVMDVHREVPL--LPPMIVVDKHDGAPSQRWSIY 286
           DKPQQRWGL AEDNTINHPNT++VMDV   VP   LP  +V +  DG  +QRW IY
Sbjct: 241 DKPQQRWGLGAEDNTINHPNTDMVMDV-LSVPFDDLPLAVVTNHRDGTATQRWIIY 288

[Close]
BLAST of CmaCh04G005230 vs. NCBI nr
Match: gi|659112133|ref|XP_008456079.1| (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 8.0e-69
Identity = 151/297 (50.84%), Postives = 202/297 (68.01%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSL----AIAAPSEYG---AFGG---RTHLVGRDGLCLDTM--LLSGYY 63
           M++++L I +AFSL    A+A PS YG    +GG    THLVGRDGLCL+       G  
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPSNYGYGGEYGGVPRATHLVGRDGLCLEMSPWFYRGNN 60

Query: 64  PQTDLSQC-QPRKLSQLWTILEDGTIRASDVRYCLVPKTQFIGPVGPNVVVMDCTKEVRH 123
             T LS C + +K +QLWT++ DGTIR  + ++CLV     +G +    VV +C KE   
Sbjct: 61  FPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADV-LVGLIN-KAVVRECAKEPNS 120

Query: 124 DMKWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKWLDN 183
           + +WT KKDGTI H ESG+VLT      VTL++N++ PSQSWEATES  PM+ANI+WL+N
Sbjct: 121 NKRWTHKKDGTITHVESGMVLTGDSD-YVTLQSNKNTPSQSWEATESSTPMIANIEWLNN 180

Query: 184 LCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVVVSR 243
           LCL+S +  N +V LN C+R++K+QRWALYGDGTIRQN  R+ CLTS E   G  +V+S+
Sbjct: 181 LCLQSTDDSN-HVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDE-YLGRFIVMSK 240

Query: 244 CADKPQQRWGL-AEDNTINHPNTNLVMDVHREVPL--LPPMIVVDKHDGAPSQRWSI 285
           C DKPQQRW L A+D+TI+HPN+++VMDV   VP       +V ++ DG+ SQRW+I
Sbjct: 241 CEDKPQQRWNLGAKDSTIDHPNSDMVMDV-LFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]
BLAST of CmaCh04G005230 vs. NCBI nr
Match: gi|778680239|ref|XP_004151509.2| (PREDICTED: nigrin b-like [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 3.7e-66
Identity = 148/298 (49.66%), Postives = 193/298 (64.77%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSLA----IAAPSEYG---AFGG---RTHLVGRDGLCLDTMLLSGYYP- 63
           M++++L I +AFSL     IA P  YG    +GG    THLVGRDGLCL+ +LL  Y P 
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMVLLRSYKPA 60

Query: 64  ----QTDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQFIGPVGPNVVVMDCTKEV 123
                T L  C  +K +QLWT++ DGTIR  + R+CL     F G +    VV +C K  
Sbjct: 61  GINFPTRLLPCDEKKQTQLWTVVGDGTIRPMNDRFCLAADV-FYGVIN-KAVVSECGKVS 120

Query: 124 RHDMKWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKWL 183
             + +W  K DGTI   ES +VLT      VTL++ +  PSQSWE TESL PMVANI+WL
Sbjct: 121 DSNKQWIHKNDGTIALAESRMVLTG-DSDYVTLQSIKYTPSQSWEVTESLNPMVANIEWL 180

Query: 184 DNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVVV 243
           +NLCL+S + ++S V LN C+   K QRWALY DGTIRQ+  R+ CLT SE+NY   VVV
Sbjct: 181 NNLCLQSTD-DSSNVGLNGCNTYTKYQRWALYADGTIRQHVNRNYCLT-SEQNYDRSVVV 240

Query: 244 SRCADKPQQRWGL-AEDNTINHPNTNLVMDVHREVPLLPPMIVVDKH-DGAPSQRWSI 285
           S+C DKPQQRW L A+D+TI+HPNTN+V+DV   +    P+++V  H DG+ SQRW++
Sbjct: 241 SKCEDKPQQRWSLNAKDSTIDHPNTNMVLDVLNVLDSASPLVIVTNHPDGSASQRWTM 293

[Close]
BLAST of CmaCh04G005230 vs. NCBI nr
Match: gi|566006087|ref|NP_001274403.1| (uncharacterized protein LOC101221335 precursor [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 4.1e-65
Identity = 148/300 (49.33%), Postives = 201/300 (67.00%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSL----AIAAPSEYG---AFGG---RTHLVGRDGLCLDTMLLSGYYPQ 63
           M++++L I +AFSL    AIA P  YG    +GG    THLVGRDGLCL+   +S +Y  
Sbjct: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLE---MSPWYKP 60

Query: 64  ------TDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQFIGPVGPNVVVMDCTKE 123
                 T LS C  +K +QLWTI+ DGTIR  + ++CL  +  F G +    VV +C K 
Sbjct: 61  AGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEV-FYGVIN-KAVVSECGKV 120

Query: 124 VRHDMKWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKW 183
              + KWT+K DGTI   +S +VLT      VTL++N+  PSQSWE TESL  MVANI+W
Sbjct: 121 SDPNKKWTQKNDGTIALVDSRMVLTGDLD-YVTLQSNKYTPSQSWEVTESLNSMVANIEW 180

Query: 184 LDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVV 243
           L+NLCL+S + ++S+V LN C+ D+K QRWALY DGTIRQ+  ++ CLT S++++G  VV
Sbjct: 181 LNNLCLQSTD-DSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLT-SDQDFGRFVV 240

Query: 244 VSRCADKPQQRWGL-AEDNTINHPNTNLVMDVHREVP--LLPPMIVVDKHDGAPSQRWSI 285
           VS+C DKPQQRW L A+D TI+HPNT++V+DV   VP    P ++V ++ DG+ SQRW+I
Sbjct: 241 VSKCEDKPQQRWSLDAKDYTIDHPNTDMVLDVF-SVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of CmaCh04G005230 vs. NCBI nr
Match: gi|700202446|gb|KGN57579.1| (hypothetical protein Csa_3G217160 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 1.2e-64
Identity = 147/300 (49.00%), Postives = 200/300 (66.67%), Query Frame = 1 

Query: 4   MRQVLLCIALAFSLA----IAAPSEYG---AFGG---RTHLVGRDGLCLDTMLLSGYYPQ 63
           M++++L I +AFSL     IA P  YG    +GG    THLVGRDGLCL+   +S +Y  
Sbjct: 1   MKEIVLSIIVAFSLTTQLVIAVPPNYGYGVGYGGVPGATHLVGRDGLCLE---MSPWYKP 60

Query: 64  ------TDLSQCQPRKLSQLWTILEDGTIRASDVRYCLVPKTQFIGPVGPNVVVMDCTKE 123
                 T LS C  +K +QLWTI+ DGTIR  + ++CL  +  F G +    VV +C K 
Sbjct: 61  AGINFPTRLSPCDEKKQTQLWTIVGDGTIRPMNDKFCLAAEV-FYGVIN-KAVVSECGKV 120

Query: 124 VRHDMKWTKKKDGTIHHDESGLVLTAKPGRMVTLEANEDAPSQSWEATESLYPMVANIKW 183
              + KWT+K DGTI   +S +VLT      VTL++N+  PSQSWE TESL  MVANI+W
Sbjct: 121 SDPNKKWTQKNDGTIALVDSRMVLTGDLD-YVTLQSNKYTPSQSWEVTESLNSMVANIEW 180

Query: 184 LDNLCLKSREGENSYVTLNECSRDDKNQRWALYGDGTIRQNEYRHLCLTSSERNYGALVV 243
           L+NLCL+S + ++S+V LN C+ D+K QRWALY DGTIRQ+  ++ CLT S++++G  VV
Sbjct: 181 LNNLCLQSTD-DSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLT-SDQDFGRFVV 240

Query: 244 VSRCADKPQQRWGL-AEDNTINHPNTNLVMDVHREVP--LLPPMIVVDKHDGAPSQRWSI 285
           VS+C DKPQQRW L A+D TI+HPNT++V+DV   VP    P ++V ++ DG+ SQRW+I
Sbjct: 241 VSKCEDKPQQRWSLDAKDYTIDHPNTDMVLDVF-SVPDSTFPSVLVTNRRDGSASQRWTI 291

The following BLAST results are available for this feature:
BLAST of CmaCh04G005230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NIGB_SAMNI2.2e-3435.69Nigrin b OS=Sambucus nigra PE=1 SV=2[more]
ABRC_ABRPR1.1e-3034.25Abrin-c OS=Abrus precatorius PE=1 SV=1[more]
SGSL_TRIAN4.3e-3032.44Seed lectin (Fragments) OS=Trichosanthes anguina PE=1 SV=2[more]
RIP1_SAMNI7.3e-3034.24Ribosome-inactivating protein SNAI' OS=Sambucus nigra PE=1 SV=1[more]
ABRB_ABRPR1.2e-2933.86Abrin-b OS=Abrus precatorius PE=1 SV=1[more]
BLAST of CmaCh04G005230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L756_CUCSA2.4e-7253.04Uncharacterized protein OS=Cucumis sativus GN=Csa_3G219180 PE=4 SV=1[more]
A0A0A0LAC2_CUCSA2.6e-6649.66Uncharacterized protein OS=Cucumis sativus GN=Csa_3G217140 PE=4 SV=1[more]
Q9SLV9_CUCSA2.9e-6549.33XSP30 OS=Cucumis sativus GN=XSP30 PE=2 SV=1[more]
A0A0A0L9D1_CUCSA8.3e-6549.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G217160 PE=4 SV=1[more]
Q58A89_SAMRA9.9e-3435.69Lectin OS=Sambucus racemosa subsp. sieboldiana GN=LecSSA-b-3a PE=2 SV=1[more]
BLAST of CmaCh04G005230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G005230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457105|ref|XP_004146289.1|3.5e-7253.04PREDICTED: nigrin b-like [Cucumis sativus][more]
gi|659112133|ref|XP_008456079.1|8.0e-6950.84PREDICTED: nigrin b-like [Cucumis melo][more]
gi|778680239|ref|XP_004151509.2|3.7e-6649.66PREDICTED: nigrin b-like [Cucumis sativus][more]
gi|566006087|ref|NP_001274403.1|4.1e-6549.33uncharacterized protein LOC101221335 precursor [Cucumis sativus][more]
gi|700202446|gb|KGN57579.1|1.2e-6449.00hypothetical protein Csa_3G217160 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G005230.1CmaCh04G005230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000772Ricin B, lectin domainPFAMPF00652Ricin_B_lectincoord: 169..282
score: 5.6E-22coord: 33..152
score: 1.5
IPR000772Ricin B, lectin domainSMARTSM00458ricin_3coord: 29..155
score: 5.3E-4coord: 159..285
score: 9.6
IPR000772Ricin B, lectin domainPROFILEPS50231RICIN_B_LECTINcoord: 31..155
score: 21.382coord: 169..285
score: 27
IPR000772Ricin B, lectin domainunknownSSF50370Ricin B-like lectinscoord: 32..153
score: 1.91E-16coord: 159..284
score: 1.2
NoneNo IPR availableGENE3DG3DSA:2.80.10.50coord: 33..153
score: 2.8E-15coord: 164..284
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G005230Lsi05G001810Bottle gourd (USVL1VR-Ls)cmalsiB690
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G005230Cucurbita maxima (Rimu)cmacmaB351
CmaCh04G005230Cucumber (Gy14) v1cgycmaB0012
CmaCh04G005230Cucurbita moschata (Rifu)cmacmoB701
CmaCh04G005230Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G005230Wild cucumber (PI 183967)cmacpiB705
CmaCh04G005230Cucumber (Chinese Long) v2cmacuB697
CmaCh04G005230Melon (DHL92) v3.5.1cmameB691
CmaCh04G005230Watermelon (Charleston Gray)cmawcgB659
CmaCh04G005230Watermelon (97103) v1cmawmB703
CmaCh04G005230Cucurbita pepo (Zucchini)cmacpeB715
CmaCh04G005230Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G005230Cucumber (Gy14) v2cgybcmaB410
CmaCh04G005230Melon (DHL92) v3.6.1cmamedB777
CmaCh04G005230Silver-seed gourdcarcmaB0086
CmaCh04G005230Silver-seed gourdcarcmaB0925
CmaCh04G005230Cucumber (Chinese Long) v3cmacucB0829
CmaCh04G005230Watermelon (97103) v2cmawmbB763
CmaCh04G005230Wax gourdcmawgoB0852