CmaCh04G004000 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGCATAGAGGTTTTGTGGTTATGGTTACGGTGGCGATGTTGATCGTCTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCCATTTCTCCGTCTGTCCAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCGACTTCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCCCCTCCAGCAGACGCTCCGGCTCCGTCTGGTAACTCCGCCGCTTCGATCTCTCTCTCGATGTTCGGATCTGTGGCCGCTGTGCTGTTCGCCATCGTTTTTATGATCTGAGAGCTGTTTGATTTGATATTGATTAGTTCTCTTGTATCTGAGTGATTTACTTCGTAGTTGCTTACTGAGTACATTATATTTCGTTTTTTTTTTTTTTCCTTGTGTGTATCTTTCACAGTTTGGGATGGACTCTATACTATCTTCTTTCATTCTTTCGTCTGATATAATTTGTTTCATTGGTTCTCAGTCATGTCGATTATGTGTTTCTTCTTGTTGATGGAGCTCCTGTGTCTGATCCTCATAATTCATTAAATTGTATCACATTTTATCCTCATTTTAACAGTTCAGGTTATTAAAGTCTTCATTAAATTAGAAACGAGGAATTCATGATTTTGAAGAATGAATTATATTGATCCATACAGATGGAACCATTGAGATAAGAGTGGTATACGTAACTGGTCTAACAGACTCCATATCCACTTAGCCTCTAGTGTGTTTTTCTTAAAAAAGCTTTTTATGTTTGTTGAAGGGACATTGA ATGGCGCATAGAGGTTTTGTGGTTATGGTTACGGTGGCGATGTTGATCGTCTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCCATTTCTCCGTCTGTCCAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCGACTTCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCCCCTCCAGCAGACGCTCCGGCTCCGTCTGGTAACTCCGCCGCTTCGATCTCTCTCTCGATGTTCGGATCTGTGGCCGCTGTGCTGTTCGCCATCGGACATTGA ATGGCGCATAGAGGTTTTGTGGTTATGGTTACGGTGGCGATGTTGATCGTCTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCCATTTCTCCGTCTGTCCAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCGACTTCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCCCCTCCAGCAGACGCTCCGGCTCCGTCTGGTAACTCCGCCGCTTCGATCTCTCTCTCGATGTTCGGATCTGTGGCCGCTGTGCTGTTCGCCATCGGACATTGA MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPTSLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNSAASISLSMFGSVAAVLFAIGH
BLAST of CmaCh04G004000 vs. Swiss-Prot
Match: AGP1_ARATH (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 8.1e-07 Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1
BLAST of CmaCh04G004000 vs. TrEMBL
Match: A0A0A0KZB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111620 PE=4 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 3.9e-24 Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1
BLAST of CmaCh04G004000 vs. TrEMBL
Match: A0A0L9TF74_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan630s002000 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09 Identity = 60/129 (46.51%), Postives = 86/129 (66.67%), Query Frame = 1
BLAST of CmaCh04G004000 vs. TrEMBL
Match: A0A0S3R055_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G150600 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09 Identity = 60/129 (46.51%), Postives = 86/129 (66.67%), Query Frame = 1
BLAST of CmaCh04G004000 vs. TrEMBL
Match: V7CQA8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G211000g PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09 Identity = 57/128 (44.53%), Postives = 84/128 (65.62%), Query Frame = 1
BLAST of CmaCh04G004000 vs. TrEMBL
Match: I1LX63_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G042500 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 7.9e-09 Identity = 61/132 (46.21%), Postives = 85/132 (64.39%), Query Frame = 1
BLAST of CmaCh04G004000 vs. TAIR10
Match: AT5G64310.1 (AT5G64310.1 arabinogalactan protein 1) HSP 1 Score: 54.7 bits (130), Expect = 4.6e-08 Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1
BLAST of CmaCh04G004000 vs. NCBI nr
Match: gi|449438995|ref|XP_004137273.1| (PREDICTED: classical arabinogalactan protein 1-like [Cucumis sativus]) HSP 1 Score: 119.0 bits (297), Expect = 5.6e-24 Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1
BLAST of CmaCh04G004000 vs. NCBI nr
Match: gi|920682289|gb|KOM29061.1| (hypothetical protein LR48_Vigan630s002000 [Vigna angularis]) HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09 Identity = 60/129 (46.51%), Postives = 86/129 (66.67%), Query Frame = 1
BLAST of CmaCh04G004000 vs. NCBI nr
Match: gi|951034549|ref|XP_014516052.1| (PREDICTED: classical arabinogalactan protein 1-like [Vigna radiata var. radiata]) HSP 1 Score: 68.9 bits (167), Expect = 6.6e-09 Identity = 59/129 (45.74%), Postives = 84/129 (65.12%), Query Frame = 1
BLAST of CmaCh04G004000 vs. NCBI nr
Match: gi|593792176|ref|XP_007159127.1| (hypothetical protein PHAVU_002G211000g [Phaseolus vulgaris]) HSP 1 Score: 68.9 bits (167), Expect = 6.6e-09 Identity = 57/128 (44.53%), Postives = 84/128 (65.62%), Query Frame = 1
BLAST of CmaCh04G004000 vs. NCBI nr
Match: gi|571496957|ref|XP_006593749.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max]) HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08 Identity = 61/132 (46.21%), Postives = 85/132 (64.39%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |