CmaCh03G014760 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G014760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Polymorphic antigen
Location	Cma_Chr03 : 9208021 .. 9208418 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTAAGACCACGCGCCTTCCTCTGCCACGTTGTCGCTTTTGATTGGTTCATACCGACACGAGTGCAGGCCGACGAGTGGGAATGGCTCTTCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAATGAGAAACGAAAAAAAAGAAAAAAAAGAAAAAAAAGCGGAGGAGCGAAATCTCTTTCTTCCACTCTCTCCCCATCGCTTCTTCTTTCGCGCTTCCCTTTTCCCCCTCTCTCTGTCTGTTCGCTCTGATTCAGGGCATCGCTTTGTAGCATTTCTTCGTCGAGACTTGCGTTCTGCCTGTCGCAGGTACTTGCCGTTGAGGAATATAGAGATAGAGACAATTCTGCATTTGTTTTTGTTGTAGATAGGATCAAAAGTTAG

mRNA sequence

ATGTTCGTAAGACCACGCGCCTTCCTCTGCCACGTTGTCGCTTTTGATTGGTTCATACCGACACGAGTGCAGGCCGACGAGTGGGAATGGCTCTTCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAATGAGAAACGAAAAAAAAGAAAAAAAAGAAAAAAAAGCGGAGGAGCGAAATCTCTTTCTTCCACTCTCTCCCCATCGCTTCTTCTTTCGCGCTTCCCTTTTCCCCCTCTCTCTGTCTGTTCGCTCTGATTCAGGGCATCGCTTTGTAGCATTTCTTCGTCGAGACTTGCGTTCTGCCTGTCGCAGGATCAAAAGTTAG

Coding sequence (CDS)

ATGTTCGTAAGACCACGCGCCTTCCTCTGCCACGTTGTCGCTTTTGATTGGTTCATACCGACACGAGTGCAGGCCGACGAGTGGGAATGGCTCTTCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAATGAGAAACGAAAAAAAAGAAAAAAAAGAAAAAAAAGCGGAGGAGCGAAATCTCTTTCTTCCACTCTCTCCCCATCGCTTCTTCTTTCGCGCTTCCCTTTTCCCCCTCTCTCTGTCTGTTCGCTCTGATTCAGGGCATCGCTTTGTAGCATTTCTTCGTCGAGACTTGCGTTCTGCCTGTCGCAGGATCAAAAGTTAG

Protein sequence

MFVRPRAFLCHVVAFDWFIPTRVQADEWEWLFPNAYTPKYPSVSQRMRNEKKEKKEKKAEERNLFLPLSPHRFFFRASLFPLSLSVRSDSGHRFVAFLRRDLRSACRRIKS

Homology

[Close]

BLAST of CmaCh03G014760 vs. TrEMBL
Match: A0A0A0KMB8_CUCSA (Polymorphic antigen OS=Cucumis sativus GN=Csa_6G526360 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 29 EWLFPNAYTPKYPSVSQRMRNEKKEKKEKKAEERNLFLPLSPHRFFFRASLFPLSLSVRS 88
          +WL PNAYTPKYPS SQ MRNEK+       EE+NLFLPLSP       S    SL V S
Sbjct: 14 KWLSPNAYTPKYPSASQGMRNEKR-------EEQNLFLPLSPPPIASSLSPPLPSLFVSS 73

Query: 89 DSGHRFVAFL 99
          D GHRF AF+
Sbjct: 74 DLGHRFQAFV 76

[Close]

BLAST of CmaCh03G014760 vs. NCBI nr
Match: gi|700194298|gb|KGN49502.1| (Polymorphic antigen [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 29 EWLFPNAYTPKYPSVSQRMRNEKKEKKEKKAEERNLFLPLSPHRFFFRASLFPLSLSVRS 88
          +WL PNAYTPKYPS SQ MRNEK+       EE+NLFLPLSP       S    SL V S
Sbjct: 14 KWLSPNAYTPKYPSASQGMRNEKR-------EEQNLFLPLSPPPIASSLSPPLPSLFVSS 73

Query: 89 DSGHRFVAFL 99
          D GHRF AF+
Sbjct: 74 DLGHRFQAFV 76

The following BLAST results are available for this feature:

BLAST of CmaCh03G014760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G014760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMB8_CUCSA	2.5e-09	58.57	Polymorphic antigen OS=Cucumis sativus GN=Csa_6G526360 PE=4 SV=1	[more]

BLAST of CmaCh03G014760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh03G014760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194298\|gb\|KGN49502.1\|	3.6e-09	58.57	Polymorphic antigen [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G014760.1	CmaCh03G014760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 44..64 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G014760	CsaV3_6G052740	Cucumber (Chinese Long) v3	cmacucB0807
CmaCh03G014760	Cla97C01G025630	Watermelon (97103) v2	cmawmbB667

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G014760	Wax gourd	cmawgoB0789
CmaCh03G014760	Cucurbita maxima (Rimu)	cmacmaB528
CmaCh03G014760	Cucumber (Gy14) v1	cgycmaB0045
CmaCh03G014760	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G014760	Cucurbita moschata (Rifu)	cmacmoB672
CmaCh03G014760	Wild cucumber (PI 183967)	cmacpiB686
CmaCh03G014760	Cucumber (Chinese Long) v2	cmacuB678
CmaCh03G014760	Melon (DHL92) v3.5.1	cmameB618
CmaCh03G014760	Watermelon (Charleston Gray)	cmawcgB576
CmaCh03G014760	Watermelon (97103) v1	cmawmB628
CmaCh03G014760	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G014760	Cucurbita pepo (Zucchini)	cmacpeB667
CmaCh03G014760	Bottle gourd (USVL1VR-Ls)	cmalsiB602
CmaCh03G014760	Cucumber (Gy14) v2	cgybcmaB830
CmaCh03G014760	Melon (DHL92) v3.6.1	cmamedB704
CmaCh03G014760	Silver-seed gourd	carcmaB1023
CmaCh03G014760	Silver-seed gourd	carcmaB1188