Cla97C01G025630 (gene) Watermelon (97103) v2

Overview
NameCla97C01G025630
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPolymorphic antigen
LocationCla97Chr01 : 36471583 .. 36471903 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTAGGACCACGCGCCTTTCACTGCCACGCTGTCAATCTTGATTGGTTCTTACCGGCACGAATGCAGGCCGACGAGTGGGAATGGCTCTCCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCAAAGGGAATGAGAAACGAAAAAAGGGAAGAGCAAAATCTCTTTCTTCCACTCTCCCCCCATCGCTTCTTCTCTCTCCCTCCCCCTTCCTCTCTGTCTGTTTGCTCTGATTTAGGGCATCGCTTCATAGCATTTCTTCGTCGAGGCTCGCGTGTTCTACCTGTTGCAGGTATTTGCCGGAGAGGAATATAG

mRNA sequence

ATGTTGGTAGGACCACGCGCCTTTCACTGCCACGCTGTCAATCTTGATTGGTTCTTACCGGCACGAATGCAGGCCGACGAGTGGGAATGGCTCTCCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCAAAGGGAATGAGAAACGAAAAAAGGGAAGAGCAAAATCTCTTTCTTCCACTCTCCCCCCATCGCTTCTTCTCTCTCCCTCCCCCTTCCTCTCTGTCTGTTTGCTCTGATTTAGGGCATCGCTTCATAGCATTTCTTCGTCGAGGCTCGCGTGTTCTACCTGTTGCAGGTATTTGCCGGAGAGGAATATAG

Coding sequence (CDS)

ATGTTGGTAGGACCACGCGCCTTTCACTGCCACGCTGTCAATCTTGATTGGTTCTTACCGGCACGAATGCAGGCCGACGAGTGGGAATGGCTCTCCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCAAAGGGAATGAGAAACGAAAAAAGGGAAGAGCAAAATCTCTTTCTTCCACTCTCCCCCCATCGCTTCTTCTCTCTCCCTCCCCCTTCCTCTCTGTCTGTTTGCTCTGATTTAGGGCATCGCTTCATAGCATTTCTTCGTCGAGGCTCGCGTGTTCTACCTGTTGCAGGTATTTGCCGGAGAGGAATATAG

Protein sequence

MLVGPRAFHCHAVNLDWFLPARMQADEWEWLSPNAYTPKYPSVSKGMRNEKREEQNLFLPLSPHRFFSLPPPSSLSVCSDLGHRFIAFLRRGSRVLPVAGICRRGI
Homology
[Close]
BLAST of Cla97C01G025630 vs. NCBI nr
Match: KGN49502.1 (Polymorphic antigen [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 4.1e-22
Identity = 58/80 (72.50%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 29  EWLSPNAYTPKYPSVSKGMRNEKREEQNLFLPLSPHRFFS--LPPPSSLSVCSDLGHRFI 88
           +WLSPNAYTPKYPS S+GMRNEKREEQNLFLPLSP    S   PP  SL V SDLGHRF 
Sbjct: 14  KWLSPNAYTPKYPSASQGMRNEKREEQNLFLPLSPPPIASSLSPPLPSLFVSSDLGHRFQ 73

Query: 89  AFLRRGSRVLPVAGICRRGI 107
           AF+   S +LPVAGICRRG+
Sbjct: 74  AFVPPPSSLLPVAGICRRGL 93

[Close]
BLAST of Cla97C01G025630 vs. TrEMBL
Match: tr|A0A0A0KMB8|A0A0A0KMB8_CUCSA (Polymorphic antigen OS=Cucumis sativus OX=3659 GN=Csa_6G526360 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.7e-22
Identity = 58/80 (72.50%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 29  EWLSPNAYTPKYPSVSKGMRNEKREEQNLFLPLSPHRFFS--LPPPSSLSVCSDLGHRFI 88
           +WLSPNAYTPKYPS S+GMRNEKREEQNLFLPLSP    S   PP  SL V SDLGHRF 
Sbjct: 14  KWLSPNAYTPKYPSASQGMRNEKREEQNLFLPLSPPPIASSLSPPLPSLFVSSDLGHRFQ 73

Query: 89  AFLRRGSRVLPVAGICRRGI 107
           AF+   S +LPVAGICRRG+
Sbjct: 74  AFVPPPSSLLPVAGICRRGL 93

The following BLAST results are available for this feature:
BLAST of Cla97C01G025630 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49502.14.1e-2272.50Polymorphic antigen [Cucumis sativus][more]
BLAST of Cla97C01G025630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KMB8|A0A0A0KMB8_CUCSA2.7e-2272.50Polymorphic antigen OS=Cucumis sativus OX=3659 GN=Csa_6G526360 PE=4 SV=1[more]
BLAST of Cla97C01G025630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G025630 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G025630.1Cla97C01G025630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G025630Csa6G526360Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G025630CSPI06G37250Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G025630CmaCh03G014760Cucurbita maxima (Rimu)cmawmbB667
Cla97C01G025630CsaV3_6G052740Cucumber (Chinese Long) v3cucwmbB430
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G025630Silver-seed gourdcarwmbB0764
Cla97C01G025630Silver-seed gourdcarwmbB0895
Cla97C01G025630Cucumber (Gy14) v2cgybwmbB394
Cla97C01G025630Cucumber (Gy14) v1cgywmbB017
Cla97C01G025630Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G025630Cucurbita moschata (Rifu)cmowmbB639
Cla97C01G025630Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G025630Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G025630Melon (DHL92) v3.6.1medwmbB507
Cla97C01G025630Melon (DHL92) v3.5.1mewmbB515
Cla97C01G025630Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G025630Watermelon (97103) v1wmwmbB234
Cla97C01G025630Wax gourdwgowmbB396