CmaCh03G014220 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G014220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DEAD-box ATP-dependent RNA helicase 1
Location	Cma_Chr03 : 8901201 .. 8901542 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAATATTAACTTCACAAAGGAATTGCAAGTTCTACTTCTTGTAACTATGGTTATACTGTTGAAGTATTGTTCACCATTGTTATAATTAATCCTCATAATTTTTTTTTACTGGCATGTTCTTTTTGGTTTACCTCAAAATTATCGTGCTGACTGCATATACTGTTTGGATTCATGCAGTGGTGTTGATGGGTGTGTTAAGGGTAAACCTTACCGAAGGCTTGCAAAGATGGTTCTCTCTGCAACGCTTACACAGGCTCCAGGCAAGCGTGCTCAGCTTGATTTGCATCACGCTCTATTCTTAACCACTGGGAAAAGAAGATATAAACTTCCGGAGTAA

mRNA sequence

ATGGACAATATTAACTTCACAAAGGAATTGCAAGTTCTACTTCTTGTAACTATGGTTATACTGTTGAATGGTGTTGATGGGTGTGTTAAGGGTAAACCTTACCGAAGGCTTGCAAAGATGGTTCTCTCTGCAACGCTTACACAGGCTCCAGGCAAGCGTGCTCAGCTTGATTTGCATCACGCTCTATTCTTAACCACTGGGAAAAGAAGATATAAACTTCCGGAGTAA

Coding sequence (CDS)

ATGGACAATATTAACTTCACAAAGGAATTGCAAGTTCTACTTCTTGTAACTATGGTTATACTGTTGAATGGTGTTGATGGGTGTGTTAAGGGTAAACCTTACCGAAGGCTTGCAAAGATGGTTCTCTCTGCAACGCTTACACAGGCTCCAGGCAAGCGTGCTCAGCTTGATTTGCATCACGCTCTATTCTTAACCACTGGGAAAAGAAGATATAAACTTCCGGAGTAA

Protein sequence

MDNINFTKELQVLLLVTMVILLNGVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE

Homology

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BLAST of CmaCh03G014220 vs. Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 30  KGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           KGKPY RL KMVLSATLTQ P K  QLDLHH LF+TTG  RY+LPE
Sbjct: 263 KGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPE 308

[Close]

BLAST of CmaCh03G014220 vs. Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-10
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 11  QVLLLVTMVILLNGVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRR 70
           + LL     I  +GV+   KGK + RLAK+VLSATLTQ P K +QL+L H L L +GK+R
Sbjct: 249 ETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKR 308

Query: 71  YKLP 75
           Y++P
Sbjct: 309 YRIP 312

[Close]

BLAST of CmaCh03G014220 vs. TrEMBL
Match: A0A0A0KNZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524090 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-15
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 24  GVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           GV+   KGKPY RLAKMVLSATLTQ PGK AQLDLHH LFLTTGKRRYKLPE
Sbjct: 255 GVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLFLTTGKRRYKLPE 306

[Close]

BLAST of CmaCh03G014220 vs. TrEMBL
Match: A0A067KPD9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04650 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-13
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 1


Query: 24  GVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           GV+   KGKPY RL KMVLSATLTQ P K AQLDLHH LFLTTG RRYKLPE
Sbjct: 262 GVERGFKGKPYPRLVKMVLSATLTQDPSKLAQLDLHHPLFLTTGPRRYKLPE 313

[Close]

BLAST of CmaCh03G014220 vs. TrEMBL
Match: A0A068UK17_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025521001 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.7e-13
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 23  NGVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           NGV+   KGK Y RL KMVLSATLTQ PGK AQLDLHH LFLTTG++RY+LP+
Sbjct: 267 NGVERGFKGKLYPRLVKMVLSATLTQDPGKLAQLDLHHPLFLTTGEKRYQLPD 319

[Close]

BLAST of CmaCh03G014220 vs. TrEMBL
Match: M5WN51_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004455mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 23  NGVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           +G++   KGKPY RL KMVLSATLTQ P K AQLDLHH LFLTTG++RY+LPE
Sbjct: 254 SGLERGFKGKPYPRLVKMVLSATLTQDPSKLAQLDLHHPLFLTTGQKRYQLPE 306

[Close]

BLAST of CmaCh03G014220 vs. TrEMBL
Match: V4RYZ4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025380mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-12
Identity = 39/52 (75.00%), Postives = 41/52 (78.85%), Query Frame = 1


Query: 24  GVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           GV+   K KPY RL KMVLSATLTQ P K AQLDLHH LFLTTG+ RYKLPE
Sbjct: 209 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 260

[Close]

BLAST of CmaCh03G014220 vs. TAIR10
Match: AT4G15850.1 (AT4G15850.1 RNA helicase 1)

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-14
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 30  KGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           KGKPY RL KMVLSATLTQ P K  QLDLHH LF+TTG  RY+LPE
Sbjct: 263 KGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPE 308

[Close]

BLAST of CmaCh03G014220 vs. NCBI nr
Match: gi|449433605|ref|XP_004134588.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-15
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 24  GVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           GV+   KGKPY RLAKMVLSATLTQ PGK AQLDLHH LFLTTGKRRYKLPE
Sbjct: 255 GVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLFLTTGKRRYKLPE 306

[Close]

BLAST of CmaCh03G014220 vs. NCBI nr
Match: gi|659078198|ref|XP_008439599.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 5.1e-15
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 24  GVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           GV+   KGKPY RLAKM+LSATLTQ PGK AQLDLHH LFLTTGKRRYKLPE
Sbjct: 255 GVERGFKGKPYPRLAKMILSATLTQDPGKLAQLDLHHPLFLTTGKRRYKLPE 306

[Close]

BLAST of CmaCh03G014220 vs. NCBI nr
Match: gi|802596270|ref|XP_012072153.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Jatropha curcas])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 1


Query: 24  GVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           GV+   KGKPY RL KMVLSATLTQ P K AQLDLHH LFLTTG RRYKLPE
Sbjct: 262 GVERGFKGKPYPRLVKMVLSATLTQDPSKLAQLDLHHPLFLTTGPRRYKLPE 313

[Close]

BLAST of CmaCh03G014220 vs. NCBI nr
Match: gi|802596272|ref|XP_012072154.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X2 [Jatropha curcas])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 1


Query: 24  GVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           GV+   KGKPY RL KMVLSATLTQ P K AQLDLHH LFLTTG RRYKLPE
Sbjct: 262 GVERGFKGKPYPRLVKMVLSATLTQDPSKLAQLDLHHPLFLTTGPRRYKLPE 313

[Close]

BLAST of CmaCh03G014220 vs. NCBI nr
Match: gi|743885158|ref|XP_011037479.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Populus euphratica])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 24  GVDGCVKGKPYRRLAKMVLSATLTQAPGKRAQLDLHHALFLTTGKRRYKLPE 76
           GV+   KGK Y RLAKMVLSATLTQ P K AQLDLHH LFLTTG+RRY+LPE
Sbjct: 284 GVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLDLHHPLFLTTGQRRYQLPE 335

The following BLAST results are available for this feature:

BLAST of CmaCh03G014220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RH1_ARATH	1.1e-12	76.09	DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=3	[more]
RH1_ORYSJ	8.4e-10	51.56	DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g07...	[more]

BLAST of CmaCh03G014220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNZ7_CUCSA	2.7e-15	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524090 PE=4 SV=1	[more]
A0A067KPD9_JATCU	1.9e-13	78.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04650 PE=4 SV=1	[more]
A0A068UK17_COFCA	9.7e-13	73.58	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025521001 PE=4 SV=1	[more]
M5WN51_PRUPE	1.3e-12	71.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004455mg PE=4 SV=1	[more]
V4RYZ4_9ROSI	3.7e-12	75.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025380mg PE=4 SV=1	[more]

BLAST of CmaCh03G014220 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15850.1	6.0e-14	76.09	RNA helicase 1	[more]

BLAST of CmaCh03G014220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433605\|ref\|XP_004134588.1\|	3.9e-15	84.62	PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis sativus]	[more]
gi\|659078198\|ref\|XP_008439599.1\|	5.1e-15	82.69	PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Cucumis melo]	[more]
gi\|802596270\|ref\|XP_012072153.1\|	2.8e-13	78.85	PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Jatropha curcas]	[more]
gi\|802596272\|ref\|XP_012072154.1\|	2.8e-13	78.85	PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X2 [Jatropha curcas]	[more]
gi\|743885158\|ref\|XP_011037479.1\|	1.4e-12	76.92	PREDICTED: DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Populus euphratica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0010501	RNA secondary structure unwinding
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004004	ATP-dependent RNA helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G014220.1	CmaCh03G014220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G014220	CmoCh03G014180	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G014220	CmoCh07G000870	Cucurbita moschata (Rifu)	cmacmoB672
CmaCh03G014220	MELO3C007111.2	Melon (DHL92) v3.6.1	cmamedB704
CmaCh03G014220	CsaV3_6G051950	Cucumber (Chinese Long) v3	cmacucB0807
CmaCh03G014220	Bhi03G000101	Wax gourd	cmawgoB0789
CmaCh03G014220	CsGy6G035830	Cucumber (Gy14) v2	cgybcmaB830
CmaCh03G014220	Carg14991	Silver-seed gourd	carcmaB1023

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G014220	CmaCh07G000850	Cucurbita maxima (Rimu)	cmacmaB528

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G014220	Watermelon (97103) v2	cmawmbB667
CmaCh03G014220	Watermelon (97103) v2	cmawmbB682
CmaCh03G014220	Wax gourd	cmawgoB0808
CmaCh03G014220	Cucurbita maxima (Rimu)	cmacmaB232
CmaCh03G014220	Cucurbita maxima (Rimu)	cmacmaB397
CmaCh03G014220	Cucumber (Gy14) v1	cgycmaB0045
CmaCh03G014220	Cucurbita moschata (Rifu)	cmacmoB638
CmaCh03G014220	Cucurbita moschata (Rifu)	cmacmoB644
CmaCh03G014220	Wild cucumber (PI 183967)	cmacpiB686
CmaCh03G014220	Cucumber (Chinese Long) v2	cmacuB678
CmaCh03G014220	Melon (DHL92) v3.5.1	cmameB592
CmaCh03G014220	Melon (DHL92) v3.5.1	cmameB618
CmaCh03G014220	Watermelon (Charleston Gray)	cmawcgB576
CmaCh03G014220	Watermelon (Charleston Gray)	cmawcgB583
CmaCh03G014220	Watermelon (97103) v1	cmawmB622
CmaCh03G014220	Watermelon (97103) v1	cmawmB628
CmaCh03G014220	Cucurbita pepo (Zucchini)	cmacpeB653
CmaCh03G014220	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G014220	Cucurbita pepo (Zucchini)	cmacpeB667
CmaCh03G014220	Cucurbita pepo (Zucchini)	cmacpeB675
CmaCh03G014220	Bottle gourd (USVL1VR-Ls)	cmalsiB602
CmaCh03G014220	Bottle gourd (USVL1VR-Ls)	cmalsiB606
CmaCh03G014220	Melon (DHL92) v3.6.1	cmamedB677
CmaCh03G014220	Silver-seed gourd	carcmaB0413
CmaCh03G014220	Silver-seed gourd	carcmaB0587