CmaCh03G013350 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G013350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_1
LocationCma_Chr03 : 8577710 .. 8579962 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTTTCAAACTCATCACTTGGCCACTCATTCTGACCCTTCTATTCGCATCCTCTGCTCCCACTTCACACGCCGCCAGACTCCAACGAACGGATAGCCTCTTTCTGGCTGCCCTTCCCAAGGGCACCGTCCCCTCTTCCACTCCCAGCAAGAAAGGCCATGCCATGGTCCTCGACCAGAAGCTCACTGCCCGACACCTTGTACAGTCCGTTCCAAGCCCCGGCGTTGGCCATTAATACATATTCATTATTATTCTGGGTTTTGGATTTTATTCTTTGATAGATAGAGTAGTTGTACAAACATGGATTGATAATTATATTCCATTATGTGGCTTAGCTTCAAGCTCCTCTCCATCTTTCTTCGTCTTCTTCTTCTTCTCGACAATCAAATTGCATTGCATCCTAACAGTTTCATTCAATAATTTGTGAACATAATTTGGTGAAATGTAACGAATCTTGAAAGGAAAGGCATGTTGTAGGAGGGATTGAAGAAGAGCCAAACCTGCCAAATGCAGCCTACGAACTCTGTAAATAAGTATTAACGTCTCGATTCTTTTTTCTGGGAACCTTTTCAACCGCTGTCCATGTCGAAATTGAGAGGTGAAAAATTGTACCCCATGTGAGTTTAATCCAATGAGCATCAACAATTATGGGGGGAAAATTCTCAAAATTTTCGAGAAATTTGTGACCATAAATGAAGGTCTCCCGCATCATGAGGAAGATGCCTAGAACGACGACGTTTTAAAGGCCCACTCTGATGGGCAAAACGTGAGTGACAGGGCCCAAAACAAGTGGACTTTGGGCTCCCATTGGGTTTCAATATTGTTGTGGGCCGGTCCACGTAGCAACTTGAACCGCAAGTGCTGAAGTTTATATTTAATTATACTATAGTCCGATTTTATAATGCTTTATTGATTGTAACGCAAATCTTTATCCTATACAATTCAATATTATGTCCATGATATTTCTAGAACAATTTTTAAATGGTATGGGTCTACGCATTAAATACTAAAGAAATAGATATTTATTACAAATTTATAAACTTTTAAGGTAGATTAATGTGTTTAAAATACATATATTTCTTGTGTAAAAAATAAAAAAGAAAAGAAAAGAAAAAGACAAGAAAATGACATTTGAGCTCTCATCGAAGGCTTTGTTAATCTCACCCTCCTCCCAACCAGAAACACCGGACCAAACCCTAACCACAAATGCATCCCATTTATTTATTTATTTATTCATTATTCTTTTTTAATCCCACGGCCTCCCTTGGGGTATGACGTCACCAATGACATCCCTCTCACCAAAATGCCTCACGTACCCTTGTATTCCTCCTCATCCGAAACACGCCTATTCTCGCTGTCCACGTGGACCAACCTCGTGACCGAAACCTGACTTGCCTGTCCCCACCTGCGGCCACTCAGGTACGCCCCTGGACCACTCCCGTTTCTAAACTCCTCACGCGGCGCCCTTATCGAGCACGTGCCCGTATCAAACTCCAGACCCCGTTCCATTTTCAGTCATCAGGATCACCCTCTTCCCCTGCTCCTCGCCGCACCCGATTTCCTCTCCTTTCGCTATGGTTCTCTGACGTGGCTACTTCCACCACCCGACACGTAGCGATTGCTCCAGCAGCGGCAACTGGGAGCGCGTGGGACTGAACCTTGGTCATAGCCAGTTGGCATTACTGGGTAGTCTATTGGGCGACCTTATCCTCTTCTTTTTTTATTTTCTTTTTTGTTTGGTATTATATAAATAATTTTTTTCCAGAGAGGAAAAAGATTGCAATTTGGGAATTGTTTAGAGCAAAGAAAAGGTAGAGGAAAGGGAGAGGCCGTACTGCGACTCTTTGGCTTGGAGAGAGAGACCAAAACCAAACCCTAGATTTTTCAGTCCTAAGTTCCAAATTTGTTCATTTATTCACTCCAATTTCAGATCCGACCCCCAACAATCGTTCTTCCCGCTGCTTACTATTCATTTTTTGCGTCTTCCTGGTAATCATTTTTGCATCTTCATCTCTACCTTGCACTTAATTTCTGTTCTCTACTTATTTTCCTGTTCAGCTTTATCAGACTCCCCGTTTTTGGTATTTCGGAAGGATTTAGGTGGATCATGTTCTAATTTTGTGTATCTTTTAATTGATGCTTATAAGTTCTTGATACTTTGGGTGTGCGATTTTCATGTGAAATTTGTACTTGGTCTTTGTTGTGACGCTCTGCTCTTTATGCGATCCCCGTTGCAGATCTTGCCTAA

mRNA sequence

ATGGCTTGTTTCAAACTCATCACTTGGCCACTCATTCTGACCCTTCTATTCGCATCCTCTGCTCCCACTTCACACGCCGCCAGACTCCAACGAACGGATAGCCTCTTTCTGGCTGCCCTTCCCAAGGGCACCGTCCCCTCTTCCACTCCCAGCAAGAAAGGCCATGCCATGGTCCTCGACCAGAAGCTCACTGCCCGACACCTTAGCAAAGAAAAGGTAGAGGAAAGGGAGAGGCCGTACTGCGACTCTTTGGCTTGGAGAGAGAGACCAAAACCAAACCCTAGATTTTTCAGTCCTAAGTTCCAAATTTGTTCATTTATTCACTCCAATTTCAGATCCGACCCCCAACAATCGTTCTTCCCGCTGCTTACTATTCATTTTTTGCGTCTTCCTGATCTTGCCTAA

Coding sequence (CDS)

ATGGCTTGTTTCAAACTCATCACTTGGCCACTCATTCTGACCCTTCTATTCGCATCCTCTGCTCCCACTTCACACGCCGCCAGACTCCAACGAACGGATAGCCTCTTTCTGGCTGCCCTTCCCAAGGGCACCGTCCCCTCTTCCACTCCCAGCAAGAAAGGCCATGCCATGGTCCTCGACCAGAAGCTCACTGCCCGACACCTTAGCAAAGAAAAGGTAGAGGAAAGGGAGAGGCCGTACTGCGACTCTTTGGCTTGGAGAGAGAGACCAAAACCAAACCCTAGATTTTTCAGTCCTAAGTTCCAAATTTGTTCATTTATTCACTCCAATTTCAGATCCGACCCCCAACAATCGTTCTTCCCGCTGCTTACTATTCATTTTTTGCGTCTTCCTGATCTTGCCTAA

Protein sequence

MACFKLITWPLILTLLFASSAPTSHAARLQRTDSLFLAALPKGTVPSSTPSKKGHAMVLDQKLTARHLSKEKVEERERPYCDSLAWRERPKPNPRFFSPKFQICSFIHSNFRSDPQQSFFPLLTIHFLRLPDLA
Homology
[Close]
BLAST of CmaCh03G013350 vs. TrEMBL
Match: A0A0A0KKF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519990 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 1  MACFKLITWPLILTLLFASSAPTSHAARLQRTDS------LFLAALPKGTVPSSTPSKKG 60
          M  F  IT+ LIL LLFA SAPTS AARL  T++      LFL ALPKGT+P+S+PSKK 
Sbjct: 1  MPRFTFITFSLILALLFAFSAPTSLAARLLPTNTMPSPNTLFLTALPKGTIPTSSPSKKV 60

Query: 61 HAMVLDQKLTARHL 69
          H+M+L   LTARHL
Sbjct: 61 HSMLLHHNLTARHL 74

[Close]
BLAST of CmaCh03G013350 vs. TrEMBL
Match: K7L653_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G118500 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-08
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1 

Query: 11 LILTLLFASSAPTSHAARL---------QRTDSLFLAALPKGTVPSSTPSKKGHAMVLDQ 69
          L+  LLFAS      A +L          R DSLFL+ALPKGTVP S+PSKKGH+M +D+
Sbjct: 9  LLFMLLFASFCSCLEARKLVLDKKLNPSSRRDSLFLSALPKGTVPPSSPSKKGHSMEVDE 68

[Close]
BLAST of CmaCh03G013350 vs. TrEMBL
Match: A0A0B2SUT4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_015487 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-08
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1 

Query: 11 LILTLLFASSAPTSHAARL---------QRTDSLFLAALPKGTVPSSTPSKKGHAMVLDQ 69
          L+  LLFAS      A +L          R DSLFL+ALPKGTVP S+PSKKGH+M +D+
Sbjct: 9  LLFMLLFASFCSCLEARKLVLDKKLNPSSRRDSLFLSALPKGTVPPSSPSKKGHSMEVDE 68

[Close]
BLAST of CmaCh03G013350 vs. TrEMBL
Match: M5WYF5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026968mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 5  KLITWPLILTLLFASSAPTSHAARL-------------QRTDSLFLAALPKGTVPSSTPS 64
          +L    LI  ++ AS A  S + +L             +R  SLFL ALPKGTVP+STPS
Sbjct: 3  RLSALALIFLVVLASFAAASESRKLLDMKKQDCDGQYRKRVASLFLGALPKGTVPASTPS 62

Query: 65 KKGHAMVLDQKLTARHLS 70
          KKGHA+V+++KL ARHLS
Sbjct: 63 KKGHAVVINEKLIARHLS 80

[Close]
BLAST of CmaCh03G013350 vs. TrEMBL
Match: A5BB23_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006130 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 

Query: 11 LILTLLFASSAPTSHAARLQRTD--------------SLFLAALPKGTVPSSTPSKKGHA 70
          LIL ++F+S  P+  A +L   +              SL LAALPKGTVP+S+PSKKGHA
Sbjct: 9  LILFVVFSSFLPSLDARKLLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSPSKKGHA 68

[Close]
BLAST of CmaCh03G013350 vs. TAIR10
Match: AT1G29290.1 (AT1G29290.1 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 

Query: 32 TDSLFLAALPKGTVPSSTPSKKGHAMVLDQKLTARHLS 70
          T +  L+ALPKG +P+STPSKKGHA V   KL +RHLS
Sbjct: 54 TKTSTLSALPKGKIPNSTPSKKGHAAVFAGKLRSRHLS 91

[Close]
BLAST of CmaCh03G013350 vs. NCBI nr
Match: gi|659078431|ref|XP_008439721.1| (PREDICTED: uncharacterized protein LOC103484435 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 5.5e-12
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 1 

Query: 1  MACFKLITWPLILTLLFASSAPTSHAARLQRT----DSLFLAALPKGTVPSSTPSKKGHA 60
          M  F  IT  LIL LLFASSAPTS AARL  T    ++LFL ALPKGT+P+S+PSKK H+
Sbjct: 1  MPRFTFITCSLILALLFASSAPTSRAARLVPTMASPNTLFLTALPKGTIPTSSPSKKVHS 60

Query: 61 MVLDQKLTARHL 69
          M+L   LTARHL
Sbjct: 61 MLLHHNLTARHL 72

[Close]
BLAST of CmaCh03G013350 vs. NCBI nr
Match: gi|700194120|gb|KGN49324.1| (hypothetical protein Csa_6G519990 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 1  MACFKLITWPLILTLLFASSAPTSHAARLQRTDS------LFLAALPKGTVPSSTPSKKG 60
          M  F  IT+ LIL LLFA SAPTS AARL  T++      LFL ALPKGT+P+S+PSKK 
Sbjct: 1  MPRFTFITFSLILALLFAFSAPTSLAARLLPTNTMPSPNTLFLTALPKGTIPTSSPSKKV 60

Query: 61 HAMVLDQKLTARHL 69
          H+M+L   LTARHL
Sbjct: 61 HSMLLHHNLTARHL 74

[Close]
BLAST of CmaCh03G013350 vs. NCBI nr
Match: gi|734436313|gb|KHN48017.1| (hypothetical protein glysoja_015487 [Glycine soja])

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1 

Query: 11 LILTLLFASSAPTSHAARL---------QRTDSLFLAALPKGTVPSSTPSKKGHAMVLDQ 69
          L+  LLFAS      A +L          R DSLFL+ALPKGTVP S+PSKKGH+M +D+
Sbjct: 9  LLFMLLFASFCSCLEARKLVLDKKLNPSSRRDSLFLSALPKGTVPPSSPSKKGHSMEVDE 68

[Close]
BLAST of CmaCh03G013350 vs. NCBI nr
Match: gi|595885509|ref|XP_007213169.1| (hypothetical protein PRUPE_ppa026968mg [Prunus persica])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 5  KLITWPLILTLLFASSAPTSHAARL-------------QRTDSLFLAALPKGTVPSSTPS 64
          +L    LI  ++ AS A  S + +L             +R  SLFL ALPKGTVP+STPS
Sbjct: 3  RLSALALIFLVVLASFAAASESRKLLDMKKQDCDGQYRKRVASLFLGALPKGTVPASTPS 62

Query: 65 KKGHAMVLDQKLTARHLS 70
          KKGHA+V+++KL ARHLS
Sbjct: 63 KKGHAVVINEKLIARHLS 80

[Close]
BLAST of CmaCh03G013350 vs. NCBI nr
Match: gi|645237482|ref|XP_008225226.1| (PREDICTED: uncharacterized protein LOC103324892 [Prunus mume])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 5  KLITWPLILTLLFASSAPTSHAARL-------------QRTDSLFLAALPKGTVPSSTPS 64
          +L    +I  ++ AS A  S + +L             +R  SLFL ALPKGTVP+STPS
Sbjct: 3  RLSALAIIFLVVLASFAAASESRKLLDMKKQDGDGQYRKRVASLFLGALPKGTVPASTPS 62

Query: 65 KKGHAMVLDQKLTARHLS 70
          KKGHA+V+++KL ARHLS
Sbjct: 63 KKGHAVVINEKLIARHLS 80

The following BLAST results are available for this feature:
BLAST of CmaCh03G013350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh03G013350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKF2_CUCSA3.3e-1160.81Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519990 PE=4 SV=1[more]
K7L653_SOYBN9.8e-0855.22Uncharacterized protein OS=Glycine max GN=GLYMA_08G118500 PE=4 SV=1[more]
A0A0B2SUT4_GLYSO9.8e-0855.22Uncharacterized protein OS=Glycine soja GN=glysoja_015487 PE=4 SV=1[more]
M5WYF5_PRUPE1.3e-0748.72Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026968mg PE=4 SV=1[more]
A5BB23_VITVI4.9e-0750.68Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006130 PE=4 SV=1[more]
BLAST of CmaCh03G013350 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G29290.11.7e-0663.16 unknown protein[more]
BLAST of CmaCh03G013350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078431|ref|XP_008439721.1|5.5e-1263.89PREDICTED: uncharacterized protein LOC103484435 [Cucumis melo][more]
gi|700194120|gb|KGN49324.1|4.7e-1160.81hypothetical protein Csa_6G519990 [Cucumis sativus][more]
gi|734436313|gb|KHN48017.1|1.4e-0755.22hypothetical protein glysoja_015487 [Glycine soja][more]
gi|595885509|ref|XP_007213169.1|1.8e-0748.72hypothetical protein PRUPE_ppa026968mg [Prunus persica][more]
gi|645237482|ref|XP_008225226.1|3.1e-0747.44PREDICTED: uncharacterized protein LOC103324892 [Prunus mume][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006995 cellular response to nitrogen starvation
biological_process GO:0006970 response to osmotic stress
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G013350.1CmaCh03G013350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G013350Cucsa.047120Cucumber (Gy14) v1cgycmaB0045
CmaCh03G013350Cla009708Watermelon (97103) v1cmawmB628
CmaCh03G013350ClCG01G023900Watermelon (Charleston Gray)cmawcgB576
CmaCh03G013350CmoCh07G001670Cucurbita moschata (Rifu)cmacmoB672
CmaCh03G013350Lsi01G002250Bottle gourd (USVL1VR-Ls)cmalsiB602
CmaCh03G013350Carg15358Silver-seed gourdcarcmaB0763
CmaCh03G013350Carg23110Silver-seed gourdcarcmaB1311
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh03G013350CmaCh07G001720Cucurbita maxima (Rimu)cmacmaB528
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G013350Cucurbita maxima (Rimu)cmacmaB232
CmaCh03G013350Cucurbita maxima (Rimu)cmacmaB397
CmaCh03G013350Cucumber (Gy14) v1cgycmaB0618
CmaCh03G013350Cucurbita moschata (Rifu)cmacmoB638
CmaCh03G013350Cucurbita moschata (Rifu)cmacmoB644
CmaCh03G013350Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G013350Wild cucumber (PI 183967)cmacpiB655
CmaCh03G013350Wild cucumber (PI 183967)cmacpiB686
CmaCh03G013350Cucumber (Chinese Long) v2cmacuB650
CmaCh03G013350Cucumber (Chinese Long) v2cmacuB678
CmaCh03G013350Melon (DHL92) v3.5.1cmameB592
CmaCh03G013350Melon (DHL92) v3.5.1cmameB618
CmaCh03G013350Watermelon (Charleston Gray)cmawcgB583
CmaCh03G013350Watermelon (97103) v1cmawmB622
CmaCh03G013350Cucurbita pepo (Zucchini)cmacpeB653
CmaCh03G013350Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G013350Cucurbita pepo (Zucchini)cmacpeB667
CmaCh03G013350Cucurbita pepo (Zucchini)cmacpeB675
CmaCh03G013350Bottle gourd (USVL1VR-Ls)cmalsiB606
CmaCh03G013350Cucumber (Gy14) v2cgybcmaB127
CmaCh03G013350Cucumber (Gy14) v2cgybcmaB830
CmaCh03G013350Melon (DHL92) v3.6.1cmamedB677
CmaCh03G013350Melon (DHL92) v3.6.1cmamedB704
CmaCh03G013350Silver-seed gourdcarcmaB0199
CmaCh03G013350Silver-seed gourdcarcmaB1111
CmaCh03G013350Cucumber (Chinese Long) v3cmacucB0776
CmaCh03G013350Cucumber (Chinese Long) v3cmacucB0807
CmaCh03G013350Watermelon (97103) v2cmawmbB667
CmaCh03G013350Watermelon (97103) v2cmawmbB682
CmaCh03G013350Wax gourdcmawgoB0787
CmaCh03G013350Wax gourdcmawgoB0808
CmaCh03G013350Wax gourdcmawgoB0810