Carg15358 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15358
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	B-cell lymphoma 6 protein
Location	Cucurbita_argyrosperma_scaffold_085 : 492882 .. 493121 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGCTTCAAACTCATCACTTGGCCACTCATTTTGACCCTGTTATTCGCATCCTCTGCTCCCACTTCACACGCCGCCAGACTCCTCCGAACGGATAGCCTCTTTCTGGCTGCCCTTCCCAAGGGCACTGTCCCCTCTTCCACTCCTAGCAAGAAAGGCCATGCCATGGTCCTCGACCAGAAGCTCACTGCCCGACACCTTGTACAGTCCGTTCCAAGCCCCGGCATTGGCCATTAG

mRNA sequence

ATGGCTTGCTTCAAACTCATCACTTGGCCACTCATTTTGACCCTGTTATTCGCATCCTCTGCTCCCACTTCACACGCCGCCAGACTCCTCCGAACGGATAGCCTCTTTCTGGCTGCCCTTCCCAAGGGCACTGTCCCCTCTTCCACTCCTAGCAAGAAAGGCCATGCCATGGTCCTCGACCAGAAGCTCACTGCCCGACACCTTGTACAGTCCGTTCCAAGCCCCGGCATTGGCCATTAG

Coding sequence (CDS)

ATGGCTTGCTTCAAACTCATCACTTGGCCACTCATTTTGACCCTGTTATTCGCATCCTCTGCTCCCACTTCACACGCCGCCAGACTCCTCCGAACGGATAGCCTCTTTCTGGCTGCCCTTCCCAAGGGCACTGTCCCCTCTTCCACTCCTAGCAAGAAAGGCCATGCCATGGTCCTCGACCAGAAGCTCACTGCCCGACACCTTGTACAGTCCGTTCCAAGCCCCGGCATTGGCCATTAG

Protein sequence

MACFKLITWPLILTLLFASSAPTSHAARLLRTDSLFLAALPKGTVPSSTPSKKGHAMVLDQKLTARHLVQSVPSPGIGH

Homology

[Close]

BLAST of Carg15358 vs. NCBI nr
Match: KGN49324.1 (hypothetical protein Csa_6G519990 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 1  MACFKLITWPLILTLLFASSAPTSHAARLLRT------DSLFLAALPKGTVPSSTPSKKG 60
          M  F  IT+ LIL LLFA SAPTS AARLL T      ++LFL ALPKGT+P+S+PSKK 
Sbjct: 1  MPRFTFITFSLILALLFAFSAPTSLAARLLPTNTMPSPNTLFLTALPKGTIPTSSPSKKV 60

Query: 61 HAMVLDQKLTARHLVQSVPSPGIGH 80
          H+M+L   LTARHLVQSVPSPG+GH
Sbjct: 61 HSMLLHHNLTARHLVQSVPSPGVGH 85

[Close]

BLAST of Carg15358 vs. NCBI nr
Match: KHN48017.1 (hypothetical protein glysoja_015487 [Glycine soja] >KRH42900.1 hypothetical protein GLYMA_08G118500 [Glycine max])

HSP 1 Score: 79.0 bits (193), Expect = 8.3e-12
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 11 LILTLLFASSAPTSHAARLL---------RTDSLFLAALPKGTVPSSTPSKKGHAMVLDQ 70
          L+  LLFAS      A +L+         R DSLFL+ALPKGTVP S+PSKKGH+M +D+
Sbjct: 9  LLFMLLFASFCSCLEARKLVLDKKLNPSSRRDSLFLSALPKGTVPPSSPSKKGHSMEVDE 68

Query: 71 KLTARHLV-------QSVPSPGIGH 80
          KL ARHL+       +SVPSPG+GH
Sbjct: 69 KLIARHLITIDPVLLRSVPSPGVGH 93

[Close]

BLAST of Carg15358 vs. NCBI nr
Match: XP_015875435.1 (precursor of CEP14 [Ziziphus jujuba])

HSP 1 Score: 79.0 bits (193), Expect = 8.3e-12
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 11 LILTLLFASSAPTSHAARLL-----------RTDSLFLAALPKGTVPSSTPSKKGHAMVL 70
          ++  ++FASSA +S A +LL             DSLFL+ALPKG VPSS+PS KGHA+V+
Sbjct: 10 ILFMVVFASSAWSSEARKLLVIKDEEKRAPSMVDSLFLSALPKGNVPSSSPSHKGHAVVV 69

Query: 71 DQKLTARHLV------QSVPSPGIGH 80
          ++KL ARHL+      QSVPSPG+GH
Sbjct: 70 NEKLIARHLISIERILQSVPSPGMGH 95

[Close]

BLAST of Carg15358 vs. NCBI nr
Match: POE82895.1 (hypothetical protein CFP56_14175 [Quercus suber])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 32 TDSLFLAALPKGTVPSSTPSKKGHAMVLDQKLTARHLVQ------SVPSPGIGH 80
          +DSLFL+ALPKGTVPSSTPSKKGHA+ +D+KL ARHL+       SVPSPG+GH
Sbjct: 41 SDSLFLSALPKGTVPSSTPSKKGHAVEVDEKLIARHLISIDRILGSVPSPGVGH 94

[Close]

BLAST of Carg15358 vs. NCBI nr
Match: XP_002265506.1 (PREDICTED: uncharacterized protein LOC100246308 [Vitis vinifera] >CAN69942.1 hypothetical protein VITISV_006130 [Vitis vinifera])

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 11 LILTLLFASSAPTSHAARLLRTD--------------SLFLAALPKGTVPSSTPSKKGHA 70
          LIL ++F+S  P+  A +LL  +              SL LAALPKGTVP+S+PSKKGHA
Sbjct: 9  LILFVVFSSFLPSLDARKLLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSPSKKGHA 68

Query: 71 MVLDQKLTARHL------VQSVPSPGIGH 80
          MV+D+KL ARHL      ++SVPSPG+GH
Sbjct: 69 MVVDEKLIARHLAVVDRILRSVPSPGVGH 97

[Close]

BLAST of Carg15358 vs. TAIR10
Match: AT1G29290.1 (unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 6.5e-11
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 24  SHAARLLRTDSLFLAALPKGTVPSSTPSKKGHAMVLDQKLTARHL------VQSVPSPGI 80
           SH   + +T +  L+ALPKG +P+STPSKKGHA V   KL +RHL      ++SVPSPG+
Sbjct: 48  SHMPHVTKTST--LSALPKGKIPNSTPSKKGHAAVFAGKLRSRHLSTVDRYLRSVPSPGV 107

[Close]

BLAST of Carg15358 vs. TAIR10
Match: AT1G16950.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 12 ILTLLFASSAPTSHAARLL----RTDSLFLAALPKGTVPSSTPSKKGHA---------MV 71
          +L L+      +S A ++L     +  LFL+ALPKG VP S PS KGH          MV
Sbjct: 13 LLILIVGFVLQSSQARKVLVPYGTSKGLFLSALPKGNVPPSGPSDKGHTSPPDDTDQRMV 72

Query: 72 LDQKLTARHLVQSVPSPGIGH 80
           +        ++SVPSPG+GH
Sbjct: 73 PENSPEIYRRLESVPSPGVGH 93

[Close]

BLAST of Carg15358 vs. Swiss-Prot
Match: sp|Q52K95|PCP14_ARATH (Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-09
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 24  SHAARLLRTDSLFLAALPKGTVPSSTPSKKGHAMVLDQKLTARHL------VQSVPSPGI 80
           SH   + +T +  L+ALPKG +P+STPSKKGHA V   KL +RHL      ++SVPSPG+
Sbjct: 48  SHMPHVTKTST--LSALPKGKIPNSTPSKKGHAAVFAGKLRSRHLSTVDRYLRSVPSPGV 107

[Close]

BLAST of Carg15358 vs. Swiss-Prot
Match: sp|Q9FZ54|PCP13_ARATH (Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.7e-05
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 12 ILTLLFASSAPTSHAARLL----RTDSLFLAALPKGTVPSSTPSKKGHA---------MV 71
          +L L+      +S A ++L     +  LFL+ALPKG VP S PS KGH          MV
Sbjct: 13 LLILIVGFVLQSSQARKVLVPYGTSKGLFLSALPKGNVPPSGPSDKGHTSPPDDTDQRMV 72

Query: 72 LDQKLTARHLVQSVPSPGIGH 80
           +        ++SVPSPG+GH
Sbjct: 73 PENSPEIYRRLESVPSPGVGH 93

[Close]

BLAST of Carg15358 vs. TrEMBL
Match: tr|A0A0A0KKF2|A0A0A0KKF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519990 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-18
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 1  MACFKLITWPLILTLLFASSAPTSHAARLLRT------DSLFLAALPKGTVPSSTPSKKG 60
          M  F  IT+ LIL LLFA SAPTS AARLL T      ++LFL ALPKGT+P+S+PSKK 
Sbjct: 1  MPRFTFITFSLILALLFAFSAPTSLAARLLPTNTMPSPNTLFLTALPKGTIPTSSPSKKV 60

Query: 61 HAMVLDQKLTARHLVQSVPSPGIGH 80
          H+M+L   LTARHLVQSVPSPG+GH
Sbjct: 61 HSMLLHHNLTARHLVQSVPSPGVGH 85

[Close]

BLAST of Carg15358 vs. TrEMBL
Match: tr|K7L653|K7L653_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G118500 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-12
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 11 LILTLLFASSAPTSHAARLL---------RTDSLFLAALPKGTVPSSTPSKKGHAMVLDQ 70
          L+  LLFAS      A +L+         R DSLFL+ALPKGTVP S+PSKKGH+M +D+
Sbjct: 9  LLFMLLFASFCSCLEARKLVLDKKLNPSSRRDSLFLSALPKGTVPPSSPSKKGHSMEVDE 68

Query: 71 KLTARHLV-------QSVPSPGIGH 80
          KL ARHL+       +SVPSPG+GH
Sbjct: 69 KLIARHLITIDPVLLRSVPSPGVGH 93

[Close]

BLAST of Carg15358 vs. TrEMBL
Match: tr|A0A2P4JQ58|A0A2P4JQ58_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_14175 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.1e-12
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 32 TDSLFLAALPKGTVPSSTPSKKGHAMVLDQKLTARHLVQ------SVPSPGIGH 80
          +DSLFL+ALPKGTVPSSTPSKKGHA+ +D+KL ARHL+       SVPSPG+GH
Sbjct: 41 SDSLFLSALPKGTVPSSTPSKKGHAVEVDEKLIARHLISIDRILGSVPSPGVGH 94

[Close]

BLAST of Carg15358 vs. TrEMBL
Match: tr|A5BB23|A5BB23_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006130 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 11 LILTLLFASSAPTSHAARLLRTD--------------SLFLAALPKGTVPSSTPSKKGHA 70
          LIL ++F+S  P+  A +LL  +              SL LAALPKGTVP+S+PSKKGHA
Sbjct: 9  LILFVVFSSFLPSLDARKLLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSPSKKGHA 68

Query: 71 MVLDQKLTARHL------VQSVPSPGIGH 80
          MV+D+KL ARHL      ++SVPSPG+GH
Sbjct: 69 MVVDEKLIARHLAVVDRILRSVPSPGVGH 97

[Close]

BLAST of Carg15358 vs. TrEMBL
Match: tr|M5WYF5|M5WYF5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G067000 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 5  KLITWPLILTLLFASSAPTSHAARLL-------------RTDSLFLAALPKGTVPSSTPS 64
          +L    LI  ++ AS A  S + +LL             R  SLFL ALPKGTVP+STPS
Sbjct: 3  RLSALALIFLVVLASFAAASESRKLLDMKKQDCDGQYRKRVASLFLGALPKGTVPASTPS 62

Query: 65 KKGHAMVLDQKLTARH-------LVQSVPSPGIGH 80
          KKGHA+V+++KL ARH       L Q+VPSPG+GH
Sbjct: 63 KKGHAVVINEKLIARHLSSNDRILAQAVPSPGVGH 97

The following BLAST results are available for this feature:

BLAST of Carg15358 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49324.1	1.6e-18	65.88	hypothetical protein Csa_6G519990 [Cucumis sativus]	[more]
KHN48017.1	8.3e-12	52.94	hypothetical protein glysoja_015487 [Glycine soja] >KRH42900.1 hypothetical prot...	[more]
XP_015875435.1	8.3e-12	52.33	precursor of CEP14 [Ziziphus jujuba]	[more]
POE82895.1	1.1e-11	70.37	hypothetical protein CFP56_14175 [Quercus suber]	[more]
XP_002265506.1	1.8e-11	51.69	PREDICTED: uncharacterized protein LOC100246308 [Vitis vinifera] >CAN69942.1 hyp...	[more]

BLAST of Carg15358 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29290.1	6.5e-11	53.23	unknown protein	[more]
AT1G16950.1	3.7e-06	38.27	unknown protein	[more]

BLAST of Carg15358 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q52K95\|PCP14_ARATH	1.2e-09	53.23	Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1	[more]
sp\|Q9FZ54\|PCP13_ARATH	6.7e-05	38.27	Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1	[more]

BLAST of Carg15358 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KKF2\|A0A0A0KKF2_CUCSA	1.0e-18	65.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519990 PE=4 SV=1	[more]
tr\|K7L653\|K7L653_SOYBN	5.5e-12	52.94	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G118500 PE=4 SV=1	[more]
tr\|A0A2P4JQ58\|A0A2P4JQ58_QUESU	7.1e-12	70.37	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_14175 PE=4 SV=1	[more]
tr\|A5BB23\|A5BB23_VITVI	1.2e-11	51.69	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006130 PE=4 SV=1	[more]
tr\|M5WYF5\|M5WYF5_PRUPE	2.1e-11	48.42	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G067000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006995	cellular response to nitrogen starvation
GO:0006970	response to osmotic stress

Vocabulary: **INTERPRO**
Term	Definition
IPR038930	CEP13/CEP14

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0006970	response to osmotic stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15358-RA	Carg15358-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038930	Precursor of CEP13/CEP14	PANTHER	PTHR37180	FAMILY NOT NAMED	coord: 31..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15358	Cla009708	Watermelon (97103) v1	carwmB0545
Carg15358	ClCG01G023900	Watermelon (Charleston Gray)	carwcgB0531
Carg15358	Cucsa.047120	Cucumber (Gy14) v1	carcgyB0623
Carg15358	CmaCh03G013350	Cucurbita maxima (Rimu)	carcmaB0763
Carg15358	CmaCh07G001720	Cucurbita maxima (Rimu)	carcmaB0766
Carg15358	CmoCh07G001670	Cucurbita moschata (Rifu)	carcmoB0745
Carg15358	Lsi01G002250	Bottle gourd (USVL1VR-Ls)	carlsiB496

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15358	Carg23110	Silver-seed gourd	carcarB510

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15358	Wax gourd	carwgoB0659
Carg15358	Wax gourd	carwgoB0660
Carg15358	Silver-seed gourd	carcarB174
Carg15358	Silver-seed gourd	carcarB508
Carg15358	Cucumber (Gy14) v2	carcgybB0552
Carg15358	Cucumber (Gy14) v2	carcgybB0554
Carg15358	Cucumber (Gy14) v1	carcgyB0626
Carg15358	Cucurbita maxima (Rimu)	carcmaB0761
Carg15358	Cucurbita maxima (Rimu)	carcmaB0762
Carg15358	Cucurbita moschata (Rifu)	carcmoB0739
Carg15358	Cucurbita moschata (Rifu)	carcmoB0741
Carg15358	Cucurbita moschata (Rifu)	carcmoB0742
Carg15358	Cucurbita pepo (Zucchini)	carcpeB0771
Carg15358	Cucurbita pepo (Zucchini)	carcpeB0772
Carg15358	Cucurbita pepo (Zucchini)	carcpeB0773
Carg15358	Cucurbita pepo (Zucchini)	carcpeB0775
Carg15358	Wild cucumber (PI 183967)	carcpiB0582
Carg15358	Wild cucumber (PI 183967)	carcpiB0584
Carg15358	Cucumber (Chinese Long) v2	carcuB0576
Carg15358	Cucumber (Chinese Long) v2	carcuB0578
Carg15358	Cucumber (Chinese Long) v3	carcucB0583
Carg15358	Cucumber (Chinese Long) v3	carcucB0585
Carg15358	Bottle gourd (USVL1VR-Ls)	carlsiB497
Carg15358	Melon (DHL92) v3.5.1	carmeB0551
Carg15358	Melon (DHL92) v3.5.1	carmeB0554
Carg15358	Melon (DHL92) v3.6.1	carmedB0557
Carg15358	Melon (DHL92) v3.6.1	carmedB0560
Carg15358	Watermelon (Charleston Gray)	carwcgB0532
Carg15358	Watermelon (97103) v1	carwmB0544
Carg15358	Watermelon (97103) v2	carwmbB0571
Carg15358	Watermelon (97103) v2	carwmbB0573