CmaCh03G006500 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G006500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding family protein
Location	Cma_Chr03 : 5502224 .. 5504523 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTCTCTCTCCTCGCACAAGTCACGACGGCGAGTTGCGATTCTGGGCTCGTGGAGAGGCCGTCTTCAGAAACCCTAAAAGTCCTGTTCGTATCTGTACTGTTCTTCAGCTTTTGCTGGCCGCCGTTCTAGTTTTCATCTCATTGTGAAAAATGGTAAGCTCTTCTTTCCCAGTTCTATTTTTTCTTTCTTTGTCTATTGTTGCTTTTATTTCATCGATAAAAGGTTTAACAATCGAGCGTTTCTGTTTCTGCGCAGGCCGATTCTCATCGCAAAAGGTGAGCTTATTTACGCTTTTTTGTAATGATTTGTTTTCTTACGATTGACGATCTTGGGGCTTTCTATATCTAGGGCACGGAGATGATTTGTGTTATAGCATTCATGATCTTCTGTAGCGTTGAACTTTTTAGCACTTTTTATTATGAGTTGTCGATTAACTAAATTTTAATTCTACATAAAGGAAATACTTGTCACGAGTCTTGAGCATTTTTAGAAGGATTTTATTTCATTCATTGAGACGCCTGTAACTAGGGTTGAGCAAATTTTCTTGACAATGGTGGCTGTAATCACTTTAGGGTTTTGGAAAAAGTAACAAGGTCATGCATTACTTTTCTTTTTCTTTGTCTTAGGAAGTTCTAGCAGGTAGTAATCAAGAAATCAAATTAAAAGCAATTATACTGGGTAACTATTGTTGTAATTAATGGAGTTTGAGAGATTTGAGTATCCAAATTTTGAAGTTAATATAGGGTCTGAATTGGGTCAAGTGCCATGCGAAAGAACTTTAGTCGCTTGAACTCGCACCCTTTGTTTTCATTTTAAAACTTGGCTGTTGATGATTGAGCTGGGAATAATTTCTGATGATTTCCCTTCTCTTGTTCTGTTGGTTTCCTTTTTCCATTTTGACCATATTAAGTTGTCAGACTTGAAAACTCGTTCTGTCAGTAATTTACACATTAAGGATCAACAGAAACATGGGTGGAAAAGATTATGTGCGTTTACTATATTATAAAACTTGGCAGTTTGATAATTTAGACCATTCCTTTCTTTTAGAACATCCTCATTTTAATAATTCTAATGCATTTAGGTCGTCGGTTTTAGTACTACTCACGGTTGTAAGTGGCACAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGGTTGGTTTTGATTTTTCTTTATTACCTGGATAAATGGAAAGTAGAAACTACTTTTATGTTTGTGAACTCTGTAGCTTAGAACCCTATTTTTATGGTTACACATGTTTCTGATACAGATCAAGATCCAGAAGTCGAGGAAGGTGTGTGTGTTTCTTCGGCTGGAACTCTAGACAAAATAATCAGCGCTCTATTTCAGTAGAATTGGATCTATTTGTACTTCTATTTCATATATTGTTAGTGTTCGATTCTCCTTGGATAACATTTTTAGCTTCTTCCAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCCTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTTAGCTTCTGAACCCTATAACTTGCAGATAATTGCATGATCGTGTGAGAAGTCCCTACTTGGATCATGATGTGAAACAAGTGGCATGACATAAAGAAGACCGTATTTATTGTGTTTCTTGAAATTAAAAATGTTTTTATAGTATTTCCTGAATTGAAAAACATTTAAATGGAAATTGGGTAGATGACAGATGGTCTCAAGGTCAGTGTATTCATAATATCCCACTGTATTGAAAAACAGAAATTGATTTGACTCCAAATGGCCCGATGTTCTGCAATTACTTGTTTTATTGATCACGATGTAGTCAGTTTATTCTTCCTTTCCTAATGTTTCTATTATTTGCAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACCATGGACAATGTTGATGATGCCAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGGTACTACGATTGTTCTGCCTTGGATAGCCTTGAAGAAATTTGATTGTTTTCTTTTTTGGTTTTTTCCCTTAACTTGGAGGTTTTCTGGTTATATTCAGAACAAGTTGTGTGAGCTATGTTGGCAGCAATCAAAGATGATGAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGGTCAATGA

mRNA sequence

AAACTCTCTCTCCTCGCACAAGTCACGACGGCGAGTTGCGATTCTGGGCTCGTGGAGAGGCCGTCTTCAGAAACCCTAAAAGTCCTGTTCGTATCTGTACTGTTCTTCAGCTTTTGCTGGCCGCCGTTCTAGTTTTCATCTCATTGTGAAAAATGGCCGATTCTCATCGCAAAAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGATCAAGATCCAGAAGTCGAGGAAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCCTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACCATGGACAATGTTGATGATGCCAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGAACAAGTTGTGTGAGCTATGTTGGCAGCAATCAAAGATGATGAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGGTCAATGA

Coding sequence (CDS)

ATGGCCGATTCTCATCGCAAAAGGTACTCTCGATCTCCTTCTCCCTGGAGAGCTCCTTCAAGATCAAGATCTAGATCACGATCTAGGCCAAGGTCTAGATCCAGATCGTGGTCAAGGCCAAGGTCCCGAAGTCGTGGAAGATCAAGATCCAGAAGTCGAGGAAGGGGGGAGAATGTCAATAACCCTGGGAATACGCTTTATGTCACTGGCCTATCTACAAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTATCTTCTTGTTTCCTTGTGGTTGAACCTCGAACTCGGATTTCCCGTGGTTTTGCATTTGTAACCATGGACAATGTTGATGATGCCAATCGGTGTGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGAACAAGTTGTGTGAGCTATGTTGGCAGCAATCAAAGATGATGAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGGTCAATGA

Protein sequence

MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYITVEKNKLCELCWQQSKMMSSSMSTLVKQLGQ

Homology

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BLAST of CmaCh03G006500 vs. Swiss-Prot
Match: SR45A_ARATH (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.2e-25
Identity = 68/123 (55.28%), Postives = 85/123 (69.11%), Query Frame = 1


Query: 17  RAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVNNPGNTLYVTGLSTRVT 76
           R+P     RSR  P        R RS SR  SRS +R    +  NPGN+LYVTGLS RVT
Sbjct: 28  RSPMSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVT 87

Query: 77  ERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYIT 136
           ERDLE+HF+KEGKV+   LV++P TR SRGF F++M +V DANRC++ L+ S+L+GR IT
Sbjct: 88  ERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVIT 147

Query: 137 VEK 140
           VEK
Sbjct: 148 VEK 150

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BLAST of CmaCh03G006500 vs. Swiss-Prot
Match: TRA2B_RAT (Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 68/151 (45.03%), Postives = 81/151 (53.64%), Query Frame = 1


Query: 3   DSHRKRY-SRSPSPWRAPSR---------SRSRSRSRPRSRSRSWSRPRSRSRGRSRSRS 62
           DS R R  SRS S  R+ SR         SRSRSRS  RSRSRS+SR   R    S S  
Sbjct: 42  DSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101

Query: 63  RGRGENVNNPGNT-----LYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 122
             R  +V N  N      L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 123 AFVTMDNVDDANRCVKHLNQSILEGRYITVE 139
           AFV  +NVDDA    +  N   L+GR I V+
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVD 192

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BLAST of CmaCh03G006500 vs. Swiss-Prot
Match: TRA2B_MOUSE (Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 68/151 (45.03%), Postives = 81/151 (53.64%), Query Frame = 1


Query: 3   DSHRKRY-SRSPSPWRAPSR---------SRSRSRSRPRSRSRSWSRPRSRSRGRSRSRS 62
           DS R R  SRS S  R+ SR         SRSRSRS  RSRSRS+SR   R    S S  
Sbjct: 42  DSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101

Query: 63  RGRGENVNNPGNT-----LYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 122
             R  +V N  N      L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 123 AFVTMDNVDDANRCVKHLNQSILEGRYITVE 139
           AFV  +NVDDA    +  N   L+GR I V+
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVD 192

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BLAST of CmaCh03G006500 vs. Swiss-Prot
Match: TRA2B_HUMAN (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 68/151 (45.03%), Postives = 81/151 (53.64%), Query Frame = 1


Query: 3   DSHRKRY-SRSPSPWRAPSR---------SRSRSRSRPRSRSRSWSRPRSRSRGRSRSRS 62
           DS R R  SRS S  R+ SR         SRSRSRS  RSRSRS+SR   R    S S  
Sbjct: 42  DSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101

Query: 63  RGRGENVNNPGNT-----LYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 122
             R  +V N  N      L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 123 AFVTMDNVDDANRCVKHLNQSILEGRYITVE 139
           AFV  +NVDDA    +  N   L+GR I V+
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVD 192

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BLAST of CmaCh03G006500 vs. Swiss-Prot
Match: TRA2B_BOVIN (Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 68/151 (45.03%), Postives = 81/151 (53.64%), Query Frame = 1


Query: 3   DSHRKRY-SRSPSPWRAPSR---------SRSRSRSRPRSRSRSWSRPRSRSRGRSRSRS 62
           DS R R  SRS S  R+ SR         SRSRSRS  RSRSRS+SR   R    S S  
Sbjct: 42  DSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPM 101

Query: 63  RGRGENVNNPGNT-----LYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGF 122
             R  +V N  N      L V GLS   TERDL E FSK G ++   +V + ++R SRGF
Sbjct: 102 STRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF 161

Query: 123 AFVTMDNVDDANRCVKHLNQSILEGRYITVE 139
           AFV  +NVDDA    +  N   L+GR I V+
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVD 192

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BLAST of CmaCh03G006500 vs. TrEMBL
Match: A0A0A0KMM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507340 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 7.3e-61
Identity = 132/143 (92.31%), Postives = 137/143 (95.80%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPW+APSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR E+
Sbjct: 1   MADVHRKRYSRSPSPWKAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-EH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKNK 142
           NRCVKHLNQSILEGRYITVEK++
Sbjct: 121 NRCVKHLNQSILEGRYITVEKSR 142

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BLAST of CmaCh03G006500 vs. TrEMBL
Match: C6T424_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.8e-58
Identity = 135/172 (78.49%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWS------RPRSRSRGRSRSRSRG 60
           MADS  +R SRSPSPWRA SRSRSRSRSRPRSRSRS S      R RSRSRGRSRSRS  
Sbjct: 1   MADSPPRRNSRSPSPWRAESRSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSNE 60

Query: 61  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 120
           R E   N G TLYVTGLS+RVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAF+TMD 
Sbjct: 61  RSE-AKNAGTTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDT 120

Query: 121 VDDANRCVKHLNQSILEGRYITVEKNKLCELCWQQSKMMSSSMSTLVKQLGQ 167
           V+DANRC+K+LNQS+LEGRYITVE+N L +L WQQSKM+SSSMSTLV QL Q
Sbjct: 121 VEDANRCIKYLNQSVLEGRYITVERNTLHQLFWQQSKMISSSMSTLVIQLDQ 171

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BLAST of CmaCh03G006500 vs. TrEMBL
Match: A0A068U0J7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037009001 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.5e-58
Identity = 127/162 (78.40%), Postives = 139/162 (85.80%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPR--SRSRGRSRSRSRGRGEN 60
           MADS RKRYSRSPSPW   SRS  RSRSR RSRSRSW RP+  SRSR RS SRSRGR EN
Sbjct: 63  MADSPRKRYSRSPSPWEEKSRSPVRSRSRSRSRSRSWPRPKATSRSRSRSTSRSRGRTEN 122

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
             N GNTLYVTGLSTRVTERDLE+HFSKEGKV S FLVVEPR+R+SRGFAF+TMD+ +DA
Sbjct: 123 AINSGNTLYVTGLSTRVTERDLEDHFSKEGKVKSVFLVVEPRSRVSRGFAFITMDSAEDA 182

Query: 121 NRCVKHLNQSILEGRYITVEKNKLCELCWQQSKMMSSSMSTL 161
           NRC+KHLNQSILEGRYITVE+  L +LCWQQSKMMSSS+ T+
Sbjct: 183 NRCIKHLNQSILEGRYITVERKTLRQLCWQQSKMMSSSIPTI 224

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BLAST of CmaCh03G006500 vs. TrEMBL
Match: V4SDE9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026375mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.0e-56
Identity = 132/167 (79.04%), Postives = 143/167 (85.63%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSR----SRSRPRSRSRSWSRP----RSRSRGRSRSRS 60
           MADS RK+  RSPSP R  SRSRSR    SRSR RSRS SWSRP    RS+SRGRSRSRS
Sbjct: 1   MADSPRKKDLRSPSPVRELSRSRSRSRSFSRSRSRSRSGSWSRPRQRSRSQSRGRSRSRS 60

Query: 61  RGRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTM 120
           RGR E   NPGNTLYVTGLSTRVTERDLE+HFSKEGKV+SCFLVVEPRTRISRGFAFVTM
Sbjct: 61  RGRTE-TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTM 120

Query: 121 DNVDDANRCVKHLNQSILEGRYITVEKNKLCELCWQQSKMMSSSMST 160
           D+V+DA RC+K+LNQS+LEGRYITVE+N L +LCWQQSKM SSSMST
Sbjct: 121 DSVEDAERCIKYLNQSVLEGRYITVERNTLRQLCWQQSKMTSSSMST 166

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BLAST of CmaCh03G006500 vs. TrEMBL
Match: A0A022QNT6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012795mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.8e-55
Identity = 125/165 (75.76%), Postives = 140/165 (84.85%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRS--RSWSRPRSRSRGRSRSRSRGRGEN 60
           MADS RKR +RSPSPW   SRSRSRSRSR +SRS  RSWSRPR+RSR RS SR RGR + 
Sbjct: 1   MADSPRKRVARSPSPWEENSRSRSRSRSRSKSRSHSRSWSRPRARSRSRSGSRGRGRTDA 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
           VN PG TLYVTGLSTR TERDLE+HFSKEGKV S FLVVEPRTRISRGFAFVTM+ V+DA
Sbjct: 61  VN-PGITLYVTGLSTRATERDLEDHFSKEGKVKSVFLVVEPRTRISRGFAFVTMETVEDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKNKLCELCWQQSKMMSSSMSTLVKQ 164
           NRC+KHLNQS+LEGRYITVE+  L +LCWQ+SKM S S++T +KQ
Sbjct: 121 NRCIKHLNQSVLEGRYITVERKILRQLCWQKSKMFSRSIATKLKQ 164

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BLAST of CmaCh03G006500 vs. TAIR10
Match: AT4G35785.5 (AT4G35785.5 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-43
Identity = 109/164 (66.46%), Postives = 123/164 (75.00%), Query Frame = 1


Query: 1   MADS-HRKRYSRSPSPW----RAPSRSRSRSRSRPRSRSRSWSRPR----SRSRGR---- 60
           MADS  R+R SRSPSP     R+ SRSRSRSRSRPR RSRS S PR    SRSRGR    
Sbjct: 1   MADSPQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRILRG 60

Query: 61  ---------SRSRSRGRGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVE 120
                     RSRSR RG  V NPG TLYVTGLSTRVT++DLE HF+KEGKV+SCFLV+E
Sbjct: 61  NLFFITCTLCRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVME 120

Query: 121 PRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYITVEKNKL 143
           PRTR+SRGFAFVTM ++ DA RC+K+LNQS+LEGRYITVE+  L
Sbjct: 121 PRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKIL 164

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BLAST of CmaCh03G006500 vs. TAIR10
Match: AT1G07350.1 (AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-26
Identity = 68/123 (55.28%), Postives = 85/123 (69.11%), Query Frame = 1


Query: 17  RAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVNNPGNTLYVTGLSTRVT 76
           R+P     RSR  P        R RS SR  SRS +R    +  NPGN+LYVTGLS RVT
Sbjct: 28  RSPMSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVT 87

Query: 77  ERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHLNQSILEGRYIT 136
           ERDLE+HF+KEGKV+   LV++P TR SRGF F++M +V DANRC++ L+ S+L+GR IT
Sbjct: 88  ERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVIT 147

Query: 137 VEK 140
           VEK
Sbjct: 148 VEK 150

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BLAST of CmaCh03G006500 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 66  LYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANRCVKHL 125
           L+V+ LS   T++ L + FS  G++    L+ +  T+  +GF F+T D+ DDA + +K L
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 126 NQSILEGRYITVEKNKLCE 145
           +  I++GR I VE  K  E
Sbjct: 69  DGKIVDGRLIFVEVAKNAE 87

[Close]

BLAST of CmaCh03G006500 vs. TAIR10
Match: AT1G60650.1 (AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-09
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1


Query: 57  ENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVD 116
           EN  N  + ++V GLS  VTER LE  F + GK++ C ++V   T   RGF F+T  +  
Sbjct: 5   ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64

Query: 117 DANRCVKHLNQSILEGRYITVEK 140
            A+  +KH++   L  + I+V K
Sbjct: 65  GADDAIKHMHGRELGNKVISVNK 87

[Close]

BLAST of CmaCh03G006500 vs. TAIR10
Match: AT4G24770.1 (AT4G24770.1 31-kDa RNA binding protein)

HSP 1 Score: 57.8 bits (138), Expect = 7.5e-09
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 1


Query: 55  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 114
           R   V  P   +YV  L   V    LE+ FS+ GKV    +V +  T  SRGF FVTM +
Sbjct: 235 RAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294

Query: 115 VDDANRCVKHLNQSILEGRYITV 138
           VD+ N  +  L+   LEGR I V
Sbjct: 295 VDELNEAISALDGQNLEGRAIRV 317

[Close]

BLAST of CmaCh03G006500 vs. NCBI nr
Match: gi|700193757|gb|KGN48961.1| (hypothetical protein Csa_6G507340 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 1.0e-60
Identity = 132/143 (92.31%), Postives = 137/143 (95.80%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPW+APSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR E+
Sbjct: 1   MADVHRKRYSRSPSPWKAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-EH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKNK 142
           NRCVKHLNQSILEGRYITVEK++
Sbjct: 121 NRCVKHLNQSILEGRYITVEKSR 142

[Close]

BLAST of CmaCh03G006500 vs. NCBI nr
Match: gi|778722503|ref|XP_011658501.1| (PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 1.0e-60
Identity = 132/143 (92.31%), Postives = 137/143 (95.80%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPW+APSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR E+
Sbjct: 1   MADVHRKRYSRSPSPWKAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-EH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKNK 142
           NRCVKHLNQSILEGRYITVEK++
Sbjct: 121 NRCVKHLNQSILEGRYITVEKSR 142

[Close]

BLAST of CmaCh03G006500 vs. NCBI nr
Match: gi|659080604|ref|XP_008440881.1| (PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein, chloroplastic [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 3.0e-60
Identity = 130/143 (90.91%), Postives = 137/143 (95.80%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSR--PRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60
           MAD HRKRYSRSPSPWRAPSRSRSRSRSR  PRSRSRSWSRPRS SRGRSRSRSRGR ++
Sbjct: 1   MADVHRKRYSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGR-DH 60

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
            NNPGNTLYVTGLSTRVTERDLE+HFSKEGKV+SCFLVVEPRTRISRGFAFVTMDNVDDA
Sbjct: 61  ANNPGNTLYVTGLSTRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRCVKHLNQSILEGRYITVEKNK 142
           NRCVKHLNQS+LEGRYITVEK++
Sbjct: 121 NRCVKHLNQSVLEGRYITVEKSR 142

[Close]

BLAST of CmaCh03G006500 vs. NCBI nr
Match: gi|351724785|ref|NP_001238605.1| (uncharacterized protein LOC100527350 [Glycine max])

HSP 1 Score: 231.9 bits (590), Expect = 8.3e-58
Identity = 135/172 (78.49%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWS------RPRSRSRGRSRSRSRG 60
           MADS  +R SRSPSPWRA SRSRSRSRSRPRSRSRS S      R RSRSRGRSRSRS  
Sbjct: 1   MADSPPRRNSRSPSPWRAESRSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSNE 60

Query: 61  RGENVNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDN 120
           R E   N G TLYVTGLS+RVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAF+TMD 
Sbjct: 61  RSE-AKNAGTTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDT 120

Query: 121 VDDANRCVKHLNQSILEGRYITVEKNKLCELCWQQSKMMSSSMSTLVKQLGQ 167
           V+DANRC+K+LNQS+LEGRYITVE+N L +L WQQSKM+SSSMSTLV QL Q
Sbjct: 121 VEDANRCIKYLNQSVLEGRYITVERNTLHQLFWQQSKMISSSMSTLVIQLDQ 171

[Close]

BLAST of CmaCh03G006500 vs. NCBI nr
Match: gi|661894838|emb|CDP01837.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 127/162 (78.40%), Postives = 139/162 (85.80%), Query Frame = 1


Query: 1   MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPR--SRSRGRSRSRSRGRGEN 60
           MADS RKRYSRSPSPW   SRS  RSRSR RSRSRSW RP+  SRSR RS SRSRGR EN
Sbjct: 63  MADSPRKRYSRSPSPWEEKSRSPVRSRSRSRSRSRSWPRPKATSRSRSRSTSRSRGRTEN 122

Query: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120
             N GNTLYVTGLSTRVTERDLE+HFSKEGKV S FLVVEPR+R+SRGFAF+TMD+ +DA
Sbjct: 123 AINSGNTLYVTGLSTRVTERDLEDHFSKEGKVKSVFLVVEPRSRVSRGFAFITMDSAEDA 182

Query: 121 NRCVKHLNQSILEGRYITVEKNKLCELCWQQSKMMSSSMSTL 161
           NRC+KHLNQSILEGRYITVE+  L +LCWQQSKMMSSS+ T+
Sbjct: 183 NRCIKHLNQSILEGRYITVERKTLRQLCWQQSKMMSSSIPTI 224

The following BLAST results are available for this feature:

BLAST of CmaCh03G006500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SR45A_ARATH	9.2e-25	55.28	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1...	[more]
TRA2B_RAT	1.1e-12	45.03	Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1	[more]
TRA2B_MOUSE	1.1e-12	45.03	Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1	[more]
TRA2B_HUMAN	1.1e-12	45.03	Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1	[more]
TRA2B_BOVIN	1.1e-12	45.03	Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1	[more]

BLAST of CmaCh03G006500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMM4_CUCSA	7.3e-61	92.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507340 PE=4 SV=1	[more]
C6T424_SOYBN	5.8e-58	78.49	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A068U0J7_COFCA	7.5e-58	78.40	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037009001 PE=4 SV=1	[more]
V4SDE9_9ROSI	7.0e-56	79.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026375mg PE=4 SV=1	[more]
A0A022QNT6_ERYGU	7.8e-55	75.76	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012795mg PE=4 SV=1	[more]

BLAST of CmaCh03G006500 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35785.5	1.6e-43	66.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.1	5.2e-26	55.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.5e-09	36.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60650.1	3.4e-09	37.35	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc...	[more]
AT4G24770.1	7.5e-09	40.96	31-kDa RNA binding protein	[more]

BLAST of CmaCh03G006500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193757\|gb\|KGN48961.1\|	1.0e-60	92.31	hypothetical protein Csa_6G507340 [Cucumis sativus]	[more]
gi\|778722503\|ref\|XP_011658501.1\|	1.0e-60	92.31	PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Cucumis sati...	[more]
gi\|659080604\|ref\|XP_008440881.1\|	3.0e-60	90.91	PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein, chloro...	[more]
gi\|351724785\|ref\|NP_001238605.1\|	8.3e-58	78.49	uncharacterized protein LOC100527350 [Glycine max]	[more]
gi\|661894838\|emb\|CDP01837.1\|	1.1e-57	78.40	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006500.1	CmaCh03G006500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 66..135 score: 7.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 65..138 score: 3.8
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 64..142 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 31..140 score: 1.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 10..139 score: 3.1
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..139 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G006500	Cucsa.043980	Cucumber (Gy14) v1	cgycmaB0047
CmaCh03G006500	Cla014324	Watermelon (97103) v1	cmawmB632
CmaCh03G006500	Csa6G507340	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G006500	MELO3C007946	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G006500	ClCG01G020630	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G006500	CSPI06G32180	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G006500	CmoCh07G003960	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G006500	Bhi03G000596	Wax gourd	cmawgoB0788

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G006500	CmaCh07G004000	Cucurbita maxima (Rimu)	cmacmaB523

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G006500	Cucumber (Chinese Long) v3	cmacucB0786
CmaCh03G006500	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G006500	Watermelon (97103) v2	cmawmbB670
CmaCh03G006500	Watermelon (97103) v2	cmawmbB673
CmaCh03G006500	Wax gourd	cmawgoB0773
CmaCh03G006500	Cucumber (Gy14) v1	cgycmaB0896
CmaCh03G006500	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G006500	Wild cucumber (PI 183967)	cmacpiB666
CmaCh03G006500	Cucumber (Chinese Long) v2	cmacuB658
CmaCh03G006500	Melon (DHL92) v3.5.1	cmameB606
CmaCh03G006500	Watermelon (Charleston Gray)	cmawcgB571
CmaCh03G006500	Watermelon (97103) v1	cmawmB616
CmaCh03G006500	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G006500	Cucurbita pepo (Zucchini)	cmacpeB661
CmaCh03G006500	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G006500	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G006500	Bottle gourd (USVL1VR-Ls)	cmalsiB617
CmaCh03G006500	Cucumber (Gy14) v2	cgybcmaB405
CmaCh03G006500	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G006500	Melon (DHL92) v3.6.1	cmamedB690
CmaCh03G006500	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G006500	Silver-seed gourd	carcmaB0491
CmaCh03G006500	Silver-seed gourd	carcmaB0567
CmaCh03G006500	Silver-seed gourd	carcmaB0912