CmaCh03G006240 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G006240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RWP-RK domain-containing transcription factor
Location	Cma_Chr03 : 5422972 .. 5424264 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAGAAGTTCAACCTCCAATTACCATTCCATCTCCTGAAGAACCACTTTTGGTTCATTCTTTATTCTCTGCTTGGAGTTTTCTGCTCTTTGAAAGGGCTGTCTAAGTTTTCAGAGCTTTCGTTGTTTCACAGGTAATATTTCCATCCATTTATGGAAGTTGGTTCTGGCACATGCCATGCTCTGACTCTGCTTGCTTTATCTGCTTCTCCTTTTCTGTTTGTCACTTTCTCCTCTTATTTCTGCTAACAACATCATCTGTTTCATGATTAAAGATGAGTTCTGGGTTCAGTACAGAGTTCCCAAATGTTGCAGATCCAATGCATGATTCATATCTATCTTCAGGTTTTGCTTCTTCAACTTCTTTTTACACAGATCATGTCCCTGTTATGAAAGTTGGCCAACCAGGTGGGGCATTCCCTATTATTGCAGAGAAGAAAAGGAGGGCAACAAGTGAGCATATTGCCGGAATTGCTCTATCAGATCTGGCTAAATACTTTGATGTTCCTATTACGGAAGCTTCAAGAAGTCTAAATGTTGGATTAACAGTGCTGAAAAGAAGATGCAGAGAGTTTGGGATTCATCGATGGCCGCACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGTTATCATCCCTTTCTTTCTACTTTGCATTTGCAGCCTTGAAAGGCGCACATAGTTTGTTTATGGAAGAGGGTGCTTGTTTGTTTGTAGGAAGAAGCAAAGCGTAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGCTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGGCATAAAGCTAGAGCTCTAGTAAGTCACAGTCCAGTTTAGTTTGTAGCAGCCATTATATTGAACAAAATAAATGACTTGCAAAGTAGTTTGTTACTTTTTTTTAATCTCGATCTTGTCTCGAGATCAAGGTCTTTCAATGCAATATTGCATCTCATCTTGGCTCCCAATCGACATGGCCCACATGTCTTGATGTCATTTCGAGTCTAAGGATGTCATCGCCATCCGAGTTCTATCGAGGCATTGACCCTCTCGTGCCCATGTTAAGTCATTTACGAATACTGTACCAAATAGCGGGTGTATAATTCAAACTCTGACACGGGGTTGGGCCACAATATTGGCACACCCATGTCGCCCACTACTGTCCTTCAAAAACTCATTTCAAAGGAAGTCACGCTTGTCTCAGC

mRNA sequence

ATGACGAAGAAGTTCAACCTCCAATTACCATTCCATCTCCTGAAGAACCACTTTTGGTTCATTCTTTATTCTCTGCTTGGAGTTTTCTGCTCTTTGAAAGGGCTGTCTAAGTTTTCAGAGCTTTCGTTGTTTCACAGTACAGAGTTCCCAAATGTTGCAGATCCAATGCATGATTCATATCTATCTTCAGGTTTTGCTTCTTCAACTTCTTTTTACACAGATCATGTCCCTGTTATGAAAGTTGGCCAACCAGGTGGGGCATTCCCTATTATTGCAGAGAAGAAAAGGAGGGCAACAAGTGAGCATATTGCCGGAATTGCTCTATCAGATCTGGCTAAATACTTTGATGTTCCTATTACGGAAGCTTCAAGAAGTCTAAATGTTGGATTAACAGTGCTGAAAAGAAGATGCAGAGAGTTTGGGATTCATCGATGGCCGCACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCGTAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGCTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGGCATAAAGCTAGAGCTCTAGTAAGTCACAGTCCAGTTTAGTTTGTAGCAGCCATTATATTGAACAAAATAAATGACTTGCAAAGTAGTTTGTTACTTTTTTTTAATCTCGATCTTGTCTCGAGATCAAGGTCTTTCAATGCAATATTGCATCTCATCTTGGCTCCCAATCGACATGGCCCACATGTCTTGATGTCATTTCGAGTCTAAGGATGTCATCGCCATCCGAGTTCTATCGAGGCATTGACCCTCTCGTGCCCATGTTAAGTCATTTACGAATACTGTACCAAATAGCGGGTGTATAATTCAAACTCTGACACGGGGTTGGGCCACAATATTGGCACACCCATGTCGCCCACTACTGTCCTTCAAAAACTCATTTCAAAGGAAGTCACGCTTGTCTCAGC

Coding sequence (CDS)

ATGACGAAGAAGTTCAACCTCCAATTACCATTCCATCTCCTGAAGAACCACTTTTGGTTCATTCTTTATTCTCTGCTTGGAGTTTTCTGCTCTTTGAAAGGGCTGTCTAAGTTTTCAGAGCTTTCGTTGTTTCACAGTACAGAGTTCCCAAATGTTGCAGATCCAATGCATGATTCATATCTATCTTCAGGTTTTGCTTCTTCAACTTCTTTTTACACAGATCATGTCCCTGTTATGAAAGTTGGCCAACCAGGTGGGGCATTCCCTATTATTGCAGAGAAGAAAAGGAGGGCAACAAGTGAGCATATTGCCGGAATTGCTCTATCAGATCTGGCTAAATACTTTGATGTTCCTATTACGGAAGCTTCAAGAAGTCTAAATGTTGGATTAACAGTGCTGAAAAGAAGATGCAGAGAGTTTGGGATTCATCGATGGCCGCACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCGTAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGCTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGGCATAAAGCTAGAGCTCTAGTAAGTCACAGTCCAGTTTAG

Protein sequence

MTKKFNLQLPFHLLKNHFWFILYSLLGVFCSLKGLSKFSELSLFHSTEFPNVADPMHDSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSPV

Homology

[Close]

BLAST of CmaCh03G006240 vs. Swiss-Prot
Match: RKD5_ARATH (Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-34
Identity = 74/128 (57.81%), Postives = 101/128 (78.91%), Query Frame = 1


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I +KK+R  S H+A ++L +L+KYFD+ I EASR+L VGLTVLK++CREFGI RWPHRKI
Sbjct: 227 ILKKKKRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKI 286

Query: 151 KSIDGLIRDLQEEA-KRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQD 210
           KS+D LI DLQ EA K++E+++ A MAV K+Q  L+ E+ +I + PF E+  ETK+FRQ+
Sbjct: 287 KSLDCLIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQE 346

Query: 211 VFKRRHKA 218
            FK+RH+A
Sbjct: 347 NFKKRHRA 354

[Close]

BLAST of CmaCh03G006240 vs. Swiss-Prot
Match: RKD1_ARATH (Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-19
Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 94  KKRRATSEHIAGIALSD------LAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPH 153
           KKRR   E  +  ++S       ++ YF +PIT+A+R LN+GLT+LK+RCRE GI RWPH
Sbjct: 110 KKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPH 169

Query: 154 RKIKSIDGLIRDLQE-EAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRF 213
           RK+ S+  LI +++E E    EE++  L    ++   L+ E+++IE+ P  + E +TKR 
Sbjct: 170 RKLMSLQKLISNVKELEKMEGEENEDKLRNALEK---LEKEKKTIEKLPDLKFEDKTKRL 229

Query: 214 RQDVFKRRHKAR 219
           RQ  FK  HK +
Sbjct: 230 RQACFKANHKRK 238

[Close]

BLAST of CmaCh03G006240 vs. Swiss-Prot
Match: RKD2_ARATH (Protein RKD2 OS=Arabidopsis thaliana GN=RKD2 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 1


Query: 90  IIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRK 149
           II++     TS     ++   +++YF +PIT+A+ +LNVGLT+LKRRCRE GI RWPHRK
Sbjct: 119 IISDITTYTTSSAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRK 178

Query: 150 IKSIDGLIRDLQEEAKRR-EEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQ 209
           + S++ LI +++E  K   EE+ + L    +   ML+ E+ +IE  P  E + +TKR RQ
Sbjct: 179 LMSLNTLISNVKELQKMEGEENAEKLQDALE---MLEKEKRTIEDLPDLEFKDKTKRLRQ 238

Query: 210 DVFKRRHKAR 219
             FK  HK +
Sbjct: 239 ACFKANHKRK 245

[Close]

BLAST of CmaCh03G006240 vs. Swiss-Prot
Match: RKD4_ARATH (Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-18
Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 58  DSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAGIALSDLAKYFDV 117
           DS  SS  A        +V V KV           +KKR    +    + +S++ ++FD 
Sbjct: 109 DSSSSSPLAIQNDGLISNVKVEKV---------TVKKKRNLKKKRQDKLEMSEIKQFFDR 168

Query: 118 PITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAKRREEDQKALMAV 177
           PI +A++ LNVGLTVLK+RCRE GI+RWPHRK+KS++ LI++L+      EE+ K     
Sbjct: 169 PIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNVG--MEEEVK----- 228

Query: 178 TKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKAR 219
                 L+  R  IE+ P  EL   TK+ RQ  FK  +K R
Sbjct: 229 -----NLEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRR 248

[Close]

BLAST of CmaCh03G006240 vs. Swiss-Prot
Match: RKD3_ARATH (Protein RKD3 OS=Arabidopsis thaliana GN=RKD3 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 1


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I  K+R      I  ++   + +YF +PIT+A++ LN+G+T+LK+RCRE GI RWPHRK+
Sbjct: 144 IIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKL 203

Query: 151 KSIDGLI---RDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFR 210
            S++ LI   +DL    K R    K   A+     +L+ E++ IE  P  E   +TKR R
Sbjct: 204 TSLNALIANLKDLLGNTKGRTPKSKLRNALE----LLEMEKKMIEEVPDLEFGDKTKRLR 263

Query: 211 QDVFKRRHKARALVSHS 225
           Q  FK ++K R L S S
Sbjct: 264 QACFKAKYKRRRLFSSS 276

[Close]

BLAST of CmaCh03G006240 vs. TrEMBL
Match: A0A0A0KGY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G509650 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 7.8e-58
Identity = 120/135 (88.89%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I EKKRRATSEHIA I LSDLAK F VPITEASR+LNVGLTVLKR+CREFGIHRWPHRKI
Sbjct: 60  IVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 119

Query: 151 KSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 210
           KSIDGLIRDLQEEAK REED KALMAVTKRQMMLQNERE IERTPFRELE+ETKRFRQDV
Sbjct: 120 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKRFRQDV 179

Query: 211 FKRRHKARALVSHSP 226
           F+R+HKARAL S SP
Sbjct: 180 FRRKHKARALESQSP 194

[Close]

BLAST of CmaCh03G006240 vs. TrEMBL
Match: A0A0B0NF67_GOSAR (Protein RKD5-like protein OS=Gossypium arboreum GN=F383_08347 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.1e-46
Identity = 96/131 (73.28%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 90  IIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRK 149
           +  +KK+RA S+ +A IAL DLAKYFD+PI EASR+LNVGLTVLKR+CREFGI RWPHRK
Sbjct: 189 VAVKKKKRADSKDVARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRK 248

Query: 150 IKSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQD 209
           IKS+DGLIRDLQEEA++R++D+ A  AV KR+MML+ E+ESIE+ PF EL+SETKRFRQD
Sbjct: 249 IKSLDGLIRDLQEEAEQRQQDEAAAYAVAKRRMMLETEKESIEKEPFIELKSETKRFRQD 308

Query: 210 VFKRRHKARAL 221
           +FKRRHKARAL
Sbjct: 309 IFKRRHKARAL 319

[Close]

BLAST of CmaCh03G006240 vs. TrEMBL
Match: A0A0D2MHH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G002500 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.1e-46
Identity = 96/131 (73.28%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 90  IIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRK 149
           +  +KK+RA S+ +A IAL DLAKYFD+PI EASR+LNVGLTVLKR+CREFGI RWPHRK
Sbjct: 189 VAVKKKKRADSKDVARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRK 248

Query: 150 IKSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQD 209
           IKS+DGLIRDLQEEA++R++D+ A  AV KR+MML+ E+ESIE+ PF EL+SETKRFRQD
Sbjct: 249 IKSLDGLIRDLQEEAEQRQQDEAAAYAVAKRRMMLETEKESIEKEPFIELKSETKRFRQD 308

Query: 210 VFKRRHKARAL 221
           +FKRRHKARAL
Sbjct: 309 IFKRRHKARAL 319

[Close]

BLAST of CmaCh03G006240 vs. TrEMBL
Match: A0A061DF33_THECC (Rab escort protein OS=Theobroma cacao GN=TCM_000070 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.1e-46
Identity = 102/144 (70.83%), Postives = 121/144 (84.03%), Query Frame = 1


Query: 90  IIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRK 149
           +  +KK+RA S+ IA IAL DLAKYFD+PI EASR+LNVGLTVLKR+CREFGI RWPHRK
Sbjct: 794 VAVKKKKRADSKDIARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRK 853

Query: 150 IKSIDGLIRDLQEEA-KRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQ 209
           IKS+DGLIRDLQEEA +R++ED+ A  AV KR+MML+ E+ESIER PF EL+SETKRFRQ
Sbjct: 854 IKSLDGLIRDLQEEAEQRQQEDEAAAFAVAKRRMMLETEKESIEREPFIELKSETKRFRQ 913

Query: 210 DVFKRRHKARAL------VSHSPV 227
           D+FKRRHKA+AL      V H+PV
Sbjct: 914 DIFKRRHKAKALKNQCLSVLHNPV 937

[Close]

BLAST of CmaCh03G006240 vs. TrEMBL
Match: M5W3E6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011563mg PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.9e-46
Identity = 97/134 (72.39%), Postives = 119/134 (88.81%), Query Frame = 1


Query: 90  IIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRK 149
           I+ +KK+RA SEH+A IALSDLAKYFD+PI EASR+LNVGLTVLK++CREFGI RWPHRK
Sbjct: 65  IMEKKKKRAPSEHVANIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRK 124

Query: 150 IKSIDGLIRDLQEEAK-RREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQ 209
           IKS+DGLIRDLQEE + +++E+Q A +AV KRQ ML+NE+ESIER PF E+++ETK+FRQ
Sbjct: 125 IKSLDGLIRDLQEETEIQQQENQAAALAVAKRQRMLENEKESIERKPFLEMKTETKKFRQ 184

Query: 210 DVFKRRHKARALVS 223
           DVFKRRH+AR L S
Sbjct: 185 DVFKRRHRARLLRS 198

[Close]

BLAST of CmaCh03G006240 vs. TAIR10
Match: AT4G35590.1 (AT4G35590.1 RWP-RK domain-containing protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-35
Identity = 74/128 (57.81%), Postives = 101/128 (78.91%), Query Frame = 1


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I +KK+R  S H+A ++L +L+KYFD+ I EASR+L VGLTVLK++CREFGI RWPHRKI
Sbjct: 227 ILKKKKRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKI 286

Query: 151 KSIDGLIRDLQEEA-KRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQD 210
           KS+D LI DLQ EA K++E+++ A MAV K+Q  L+ E+ +I + PF E+  ETK+FRQ+
Sbjct: 287 KSLDCLIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQE 346

Query: 211 VFKRRHKA 218
            FK+RH+A
Sbjct: 347 NFKKRHRA 354

[Close]

BLAST of CmaCh03G006240 vs. TAIR10
Match: AT1G18790.1 (AT1G18790.1 RWP-RK domain-containing protein)

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-20
Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 94  KKRRATSEHIAGIALSD------LAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPH 153
           KKRR   E  +  ++S       ++ YF +PIT+A+R LN+GLT+LK+RCRE GI RWPH
Sbjct: 110 KKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPH 169

Query: 154 RKIKSIDGLIRDLQE-EAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRF 213
           RK+ S+  LI +++E E    EE++  L    ++   L+ E+++IE+ P  + E +TKR 
Sbjct: 170 RKLMSLQKLISNVKELEKMEGEENEDKLRNALEK---LEKEKKTIEKLPDLKFEDKTKRL 229

Query: 214 RQDVFKRRHKAR 219
           RQ  FK  HK +
Sbjct: 230 RQACFKANHKRK 238

[Close]

BLAST of CmaCh03G006240 vs. TAIR10
Match: AT1G74480.1 (AT1G74480.1 RWP-RK domain-containing protein)

HSP 1 Score: 94.7 bits (234), Expect = 7.6e-20
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 1


Query: 90  IIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRK 149
           II++     TS     ++   +++YF +PIT+A+ +LNVGLT+LKRRCRE GI RWPHRK
Sbjct: 119 IISDITTYTTSSAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRK 178

Query: 150 IKSIDGLIRDLQEEAKRR-EEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQ 209
           + S++ LI +++E  K   EE+ + L    +   ML+ E+ +IE  P  E + +TKR RQ
Sbjct: 179 LMSLNTLISNVKELQKMEGEENAEKLQDALE---MLEKEKRTIEDLPDLEFKDKTKRLRQ 238

Query: 210 DVFKRRHKAR 219
             FK  HK +
Sbjct: 239 ACFKANHKRK 245

[Close]

BLAST of CmaCh03G006240 vs. TAIR10
Match: AT5G53040.1 (AT5G53040.1 RWP-RK domain-containing protein)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-19
Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 58  DSYLSSGFASSTSFYTDHVPVMKVGQPGGAFPIIAEKKRRATSEHIAGIALSDLAKYFDV 117
           DS  SS  A        +V V KV           +KKR    +    + +S++ ++FD 
Sbjct: 109 DSSSSSPLAIQNDGLISNVKVEKV---------TVKKKRNLKKKRQDKLEMSEIKQFFDR 168

Query: 118 PITEASRSLNVGLTVLKRRCREFGIHRWPHRKIKSIDGLIRDLQEEAKRREEDQKALMAV 177
           PI +A++ LNVGLTVLK+RCRE GI+RWPHRK+KS++ LI++L+      EE+ K     
Sbjct: 169 PIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNVG--MEEEVK----- 228

Query: 178 TKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKAR 219
                 L+  R  IE+ P  EL   TK+ RQ  FK  +K R
Sbjct: 229 -----NLEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRR 248

[Close]

BLAST of CmaCh03G006240 vs. TAIR10
Match: AT5G66990.1 (AT5G66990.1 RWP-RK domain-containing protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-18
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 1


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I  K+R      I  ++   + +YF +PIT+A++ LN+G+T+LK+RCRE GI RWPHRK+
Sbjct: 144 IIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKL 203

Query: 151 KSIDGLI---RDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFR 210
            S++ LI   +DL    K R    K   A+     +L+ E++ IE  P  E   +TKR R
Sbjct: 204 TSLNALIANLKDLLGNTKGRTPKSKLRNALE----LLEMEKKMIEEVPDLEFGDKTKRLR 263

Query: 211 QDVFKRRHKARALVSHS 225
           Q  FK ++K R L S S
Sbjct: 264 QACFKAKYKRRRLFSSS 276

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: gi|659080660|ref|XP_008440912.1| (PREDICTED: protein RKD5 isoform X1 [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 5.4e-60
Identity = 125/143 (87.41%), Postives = 130/143 (90.91%), Query Frame = 1


Query: 83  QPGGAFPIIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGI 142
           + GG    IAEKKRRATSEHIAGI LSDLAK F VPITEASR+LNVGLTVLKR+CREFGI
Sbjct: 58  ESGGELIGIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGI 117

Query: 143 HRWPHRKIKSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESE 202
           HRWPHRKIKSIDGLIRDLQEEAK REED KALMAVTKRQMMLQNERE IERTPFRELESE
Sbjct: 118 HRWPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELESE 177

Query: 203 TKRFRQDVFKRRHKARALVSHSP 226
           TKRFRQDVF+R+HKARAL S SP
Sbjct: 178 TKRFRQDVFRRKHKARALESQSP 200

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: gi|659080664|ref|XP_008440914.1| (PREDICTED: protein RKD5 isoform X2 [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 2.0e-59
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 1


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           IAEKKRRATSEHIAGI LSDLAK F VPITEASR+LNVGLTVLKR+CREFGIHRWPHRKI
Sbjct: 61  IAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 120

Query: 151 KSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 210
           KSIDGLIRDLQEEAK REED KALMAVTKRQMMLQNERE IERTPFRELESETKRFRQDV
Sbjct: 121 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELESETKRFRQDV 180

Query: 211 FKRRHKARALVSHSP 226
           F+R+HKARAL S SP
Sbjct: 181 FRRKHKARALESQSP 195

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: gi|778719919|ref|XP_011658076.1| (PREDICTED: protein RKD5-like isoform X1 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 3.9e-58
Identity = 122/141 (86.52%), Postives = 127/141 (90.07%), Query Frame = 1


Query: 85  GGAFPIIAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHR 144
           GG    I EKKRRATSEHIA I LSDLAK F VPITEASR+LNVGLTVLKR+CREFGIHR
Sbjct: 59  GGELIGIVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHR 118

Query: 145 WPHRKIKSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETK 204
           WPHRKIKSIDGLIRDLQEEAK REED KALMAVTKRQMMLQNERE IERTPFRELE+ETK
Sbjct: 119 WPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETK 178

Query: 205 RFRQDVFKRRHKARALVSHSP 226
           RFRQDVF+R+HKARAL S SP
Sbjct: 179 RFRQDVFRRKHKARALESQSP 199

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: gi|449434430|ref|XP_004134999.1| (PREDICTED: protein RKD5-like isoform X2 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 120/135 (88.89%), Postives = 125/135 (92.59%), Query Frame = 1


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           I EKKRRATSEHIA I LSDLAK F VPITEASR+LNVGLTVLKR+CREFGIHRWPHRKI
Sbjct: 60  IVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 119

Query: 151 KSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 210
           KSIDGLIRDLQEEAK REED KALMAVTKRQMMLQNERE IERTPFRELE+ETKRFRQDV
Sbjct: 120 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKRFRQDV 179

Query: 211 FKRRHKARALVSHSP 226
           F+R+HKARAL S SP
Sbjct: 180 FRRKHKARALESQSP 194

[Close]

BLAST of CmaCh03G006240 vs. NCBI nr
Match: gi|1009144125|ref|XP_015889629.1| (PREDICTED: protein RKD5 [Ziziphus jujuba])

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 99/132 (75.00%), Postives = 116/132 (87.88%), Query Frame = 1


Query: 91  IAEKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRRCREFGIHRWPHRKI 150
           + +KK+RA S+HIA IALSDLAKYFDVPI EASRSL +GLTVLKR+CREFGI RWPHRKI
Sbjct: 189 LEKKKKRAASDHIARIALSDLAKYFDVPIIEASRSLKIGLTVLKRKCREFGIPRWPHRKI 248

Query: 151 KSIDGLIRDLQEEAKRREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDV 210
           KSID LIRDLQEE  +++ED  A +AV KRQ ML++E+ESIER PF E++SETKRFRQDV
Sbjct: 249 KSIDSLIRDLQEEKCQQQEDTAAAIAVEKRQKMLESEKESIERKPFLEIKSETKRFRQDV 308

Query: 211 FKRRHKARALVS 223
           FKRRH+ARAL+S
Sbjct: 309 FKRRHRARALMS 320

The following BLAST results are available for this feature:

BLAST of CmaCh03G006240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RKD5_ARATH	2.3e-34	57.81	Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1	[more]
RKD1_ARATH	6.0e-19	41.67	Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1	[more]
RKD2_ARATH	1.3e-18	42.31	Protein RKD2 OS=Arabidopsis thaliana GN=RKD2 PE=2 SV=1	[more]
RKD4_ARATH	3.9e-18	38.51	Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1	[more]
RKD3_ARATH	1.9e-17	40.15	Protein RKD3 OS=Arabidopsis thaliana GN=RKD3 PE=3 SV=1	[more]

BLAST of CmaCh03G006240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGY8_CUCSA	7.8e-58	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G509650 PE=4 SV=1	[more]
A0A0B0NF67_GOSAR	3.1e-46	73.28	Protein RKD5-like protein OS=Gossypium arboreum GN=F383_08347 PE=4 SV=1	[more]
A0A0D2MHH1_GOSRA	3.1e-46	73.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G002500 PE=4 SV=1	[more]
A0A061DF33_THECC	3.1e-46	70.83	Rab escort protein OS=Theobroma cacao GN=TCM_000070 PE=4 SV=1	[more]
M5W3E6_PRUPE	6.9e-46	72.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011563mg PE=4 SV=1	[more]

BLAST of CmaCh03G006240 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35590.1	1.3e-35	57.81	RWP-RK domain-containing protein	[more]
AT1G18790.1	3.4e-20	41.67	RWP-RK domain-containing protein	[more]
AT1G74480.1	7.6e-20	42.31	RWP-RK domain-containing protein	[more]
AT5G53040.1	2.2e-19	38.51	RWP-RK domain-containing protein	[more]
AT5G66990.1	1.1e-18	40.15	RWP-RK domain-containing protein	[more]

BLAST of CmaCh03G006240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080660\|ref\|XP_008440912.1\|	5.4e-60	87.41	PREDICTED: protein RKD5 isoform X1 [Cucumis melo]	[more]
gi\|659080664\|ref\|XP_008440914.1\|	2.0e-59	91.11	PREDICTED: protein RKD5 isoform X2 [Cucumis melo]	[more]
gi\|778719919\|ref\|XP_011658076.1\|	3.9e-58	86.52	PREDICTED: protein RKD5-like isoform X1 [Cucumis sativus]	[more]
gi\|449434430\|ref\|XP_004134999.1\|	1.1e-57	88.89	PREDICTED: protein RKD5-like isoform X2 [Cucumis sativus]	[more]
gi\|1009144125\|ref\|XP_015889629.1\|	2.6e-46	75.00	PREDICTED: protein RKD5 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003035	RWP-RK_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006240.1	CmaCh03G006240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003035	RWP-RK domain	PFAM	PF02042	RWP-RK	coord: 106..153 score: 8.3
IPR003035	RWP-RK domain	PROFILE	PS51519	RWP_RK	coord: 88..173 score: 18
None	No IPR available	unknown	Coil	Coil	coord: 150..177 scor
None	No IPR available	PANTHER	PTHR32002	FAMILY NOT NAMED	coord: 91..223 score: 9.1
None	No IPR available	PANTHER	PTHR32002:SF13	PROTEIN RKD5	coord: 91..223 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G006240	Csa6G509650	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G006240	MELO3C007974	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G006240	CSPI06G32480	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G006240	MELO3C007974.2	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G006240	CsaV3_6G047870	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G006240	Bhi03G000567	Wax gourd	cmawgoB0788
CmaCh03G006240	CsGy6G032110	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G006240	Carg00539	Silver-seed gourd	carcmaB0567

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G006240	Cucumber (Gy14) v1	cgycmaB0896
CmaCh03G006240	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G006240	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G006240	Wild cucumber (PI 183967)	cmacpiB666
CmaCh03G006240	Cucumber (Chinese Long) v2	cmacuB658
CmaCh03G006240	Melon (DHL92) v3.5.1	cmameB606
CmaCh03G006240	Watermelon (Charleston Gray)	cmawcgB571
CmaCh03G006240	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G006240	Watermelon (97103) v1	cmawmB616
CmaCh03G006240	Watermelon (97103) v1	cmawmB632
CmaCh03G006240	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G006240	Cucurbita pepo (Zucchini)	cmacpeB661
CmaCh03G006240	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G006240	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G006240	Bottle gourd (USVL1VR-Ls)	cmalsiB617
CmaCh03G006240	Silver-seed gourd	carcmaB0491
CmaCh03G006240	Silver-seed gourd	carcmaB0912
CmaCh03G006240	Cucumber (Chinese Long) v3	cmacucB0786
CmaCh03G006240	Watermelon (97103) v2	cmawmbB670
CmaCh03G006240	Watermelon (97103) v2	cmawmbB673
CmaCh03G006240	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G006240	Cucumber (Gy14) v1	cgycmaB0047