CmaCh02G008840 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G008840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransport protein SEC61 subunit beta
LocationCma_Chr02 : 5255035 .. 5255358 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGAGGCACGTCTCAATCCCAATCTGCATCATCCTCCACCTCGAGGCCTGGCGTTGTGGCTCCTCGCGGCTCCGCGGCGGCGACGGCTGGTCTTCGCCGTCGCCGTCTCGGCTCCACTTCTGGTGCGGGCACTACTGGACTTGTTTCTGGCGGATCAAGTGGCGGCGGCAACATGCTGAGATTCTACACTGACGATGCTCCTGGTTTGAAGATTTCTCCCACCGTCGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACTGGTCTCCACGTCTTCGGTAAGCTCTATCGCGCGCGATCCGCCGCGGGAGTTTAA

mRNA sequence

ATGGCTAGAGGCACGTCTCAATCCCAATCTGCATCATCCTCCACCTCGAGGCCTGGCGTTGTGGCTCCTCGCGGCTCCGCGGCGGCGACGGCTGGTCTTCGCCGTCGCCGTCTCGGCTCCACTTCTGGTGCGGGCACTACTGGACTTGTTTCTGGCGGATCAAGTGGCGGCGGCAACATGCTGAGATTCTACACTGACGATGCTCCTGGTTTGAAGATTTCTCCCACCGTCGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACTGGTCTCCACGTCTTCGGTAAGCTCTATCGCGCGCGATCCGCCGCGGGAGTTTAA

Coding sequence (CDS)

ATGGCTAGAGGCACGTCTCAATCCCAATCTGCATCATCCTCCACCTCGAGGCCTGGCGTTGTGGCTCCTCGCGGCTCCGCGGCGGCGACGGCTGGTCTTCGCCGTCGCCGTCTCGGCTCCACTTCTGGTGCGGGCACTACTGGACTTGTTTCTGGCGGATCAAGTGGCGGCGGCAACATGCTGAGATTCTACACTGACGATGCTCCTGGTTTGAAGATTTCTCCCACCGTCGTCCTCGTCGTGAGCCTCTGCTTCATCGGCTTCGTCACTGGTCTCCACGTCTTCGGTAAGCTCTATCGCGCGCGATCCGCCGCGGGAGTTTAA

Protein sequence

MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV
Homology
[Close]
BLAST of CmaCh02G008840 vs. Swiss-Prot
Match: SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.6e-16
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 24  RGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVV 83
           RGSAAATA +RRR+   TSGAG      GG+SGG  G+ML+FYTDDAPGLKISP VVL++
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]
BLAST of CmaCh02G008840 vs. Swiss-Prot
Match: SC61B_DICDI (Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum GN=sec61b PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-07
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 

Query: 54  SSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA 102
           + GG +M++FY++DA GLK+ PT VL +SL FI FV  LH+ GK  R+
Sbjct: 14  NKGGNSMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKYTRS 61

[Close]
BLAST of CmaCh02G008840 vs. Swiss-Prot
Match: SC61B_PONAB (Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 8.1e-06
Identity = 38/97 (39.18%), Postives = 50/97 (51.55%), Query Frame = 1 

Query: 5   TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNMLRFY 64
           T    +  SS   P       +A +T   R+     T  AG T      S+G G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTT-----SAGTGGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]
BLAST of CmaCh02G008840 vs. Swiss-Prot
Match: SC61B_MOUSE (Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 8.1e-06
Identity = 38/97 (39.18%), Postives = 50/97 (51.55%), Query Frame = 1 

Query: 5   TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNMLRFY 64
           T    +  SS   P       +A +T   R+     T  AG T      S+G G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTT-----SAGTGGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

[Close]
BLAST of CmaCh02G008840 vs. Swiss-Prot
Match: SC61B_HUMAN (Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 8.1e-06
Identity = 38/97 (39.18%), Postives = 50/97 (51.55%), Query Frame = 1 

Query: 5   TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNMLRFY 64
           T    +  SS   P       +A +T   R+     T  AG T      S+G G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTT-----SAGTGGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLV+SL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]
BLAST of CmaCh02G008840 vs. TrEMBL
Match: A0A0A0KHR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G293930 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-40
Identity = 96/109 (88.07%), Postives = 102/109 (93.58%), Query Frame = 1 

Query: 1   MARGTSQSQSASSS--TSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGG 60
           MARG SQSQS++SS  T+RPGVVAPRGSAAATAGLRRRR GSTS + +TGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]
BLAST of CmaCh02G008840 vs. TrEMBL
Match: M5W0W7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013697mg PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.0e-33
Identity = 82/107 (76.64%), Postives = 92/107 (85.98%), Query Frame = 1 

Query: 1   MARGTSQSQ-SASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGN 60
           MARGTSQSQ +ASSSTSRPGV+APRGSAAATAG+RRRR+G ++ +G+ G   GGS  G N
Sbjct: 1   MARGTSQSQTTASSSTSRPGVMAPRGSAAATAGMRRRRIGGSTSSGSVGGGGGGSGAGNN 60

Query: 61  MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAG 107
           MLRFYTDDAPGLKI+PTVVLV+SLCFIGFVT LHVFGKLY  RS  G
Sbjct: 61  MLRFYTDDAPGLKITPTVVLVMSLCFIGFVTALHVFGKLYLHRSGGG 107

[Close]
BLAST of CmaCh02G008840 vs. TrEMBL
Match: V7AH75_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G173500g PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-32
Identity = 84/108 (77.78%), Postives = 93/108 (86.11%), Query Frame = 1 

Query: 1   MARGTSQSQS-ASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGN 60
           MARG SQSQS AS++T+RPGV+APRGSAAATAG+RRRRLG+ S + + G  SG  SGG N
Sbjct: 1   MARGASQSQSTASAATTRPGVMAPRGSAAATAGMRRRRLGAGSSSASVG--SGSGSGGSN 60

Query: 61  MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           MLRFYTDDAPGLKISPTVVLV+SLCFIGFVT LHVFGKLYR RS  GV
Sbjct: 61  MLRFYTDDAPGLKISPTVVLVMSLCFIGFVTALHVFGKLYRYRSGVGV 106

[Close]
BLAST of CmaCh02G008840 vs. TrEMBL
Match: B9SK56_RICCO (Protein transport protein Sec61 subunit beta, putative OS=Ricinus communis GN=RCOM_1401130 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 81/104 (77.88%), Postives = 88/104 (84.62%), Query Frame = 1 

Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60
           M RG+SQSQSASSSTSRPGV APRGSAAATAG+RRRRLGS S +G T   + G     NM
Sbjct: 1   MVRGSSQSQSASSSTSRPGVAAPRGSAAATAGMRRRRLGS-SASGATSTAASGIGNSTNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSA 105
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVT LHVFGKLYR++ A
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTALHVFGKLYRSKVA 103

[Close]
BLAST of CmaCh02G008840 vs. TrEMBL
Match: Q2HSW3_MEDTR (Protein transporter Sec61 subunit beta-like protein OS=Medicago truncatula GN=MTR_2g093770 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-31
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 1 

Query: 1   MARGTSQSQSASSSTSRP---GVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGG 60
           MA+G SQSQS++S++SRP   G+ APRGSAAATAG+RRRRL  TSG  +T  V GGSSGG
Sbjct: 1   MAKGASQSQSSTSTSSRPGGGGLAAPRGSAAATAGMRRRRL--TSG-NSTASVGGGSSGG 60

Query: 61  GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
            NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVT LHVFGKLYR ++ AGV
Sbjct: 61  SNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTALHVFGKLYRYKAGAGV 107

[Close]
BLAST of CmaCh02G008840 vs. TAIR10
Match: AT5G60460.1 (AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-31
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 1   MARGTSQSQ---SASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGG 60
           MARG+SQSQ   S  SST+RPG+ APRGSAAATAG+RRRRLG   G  + G  SG  SG 
Sbjct: 1   MARGSSQSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGG-GSGVGSGS 60

Query: 61  GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAA 106
            NMLRFYTDDAPGLKISPTVVL++SLCFIGFVT LHVFGKLY  +S +
Sbjct: 61  SNMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGKLYLHKSGS 107

[Close]
BLAST of CmaCh02G008840 vs. TAIR10
Match: AT2G45070.1 (AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 84.3 bits (207), Expect = 4.8e-17
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 24  RGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGG--GNMLRFYTDDAPGLKISPTVVLVV 83
           RGSAAATA +RRR+   TSGAG      GG+SGG  G+ML+FYTDDAPGLKISP VVL++
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]
BLAST of CmaCh02G008840 vs. TAIR10
Match: AT3G60540.1 (AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-16
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 19  GVVAPRGSAAATAGLRRRR-LGSTSGAGTTGLVSGGSSGGGNMLRFYTDDAPGLKISPTV 78
           G    RGSAAATA +RRR+  G +S AG          G G ML+FYTDDAPGLKISP V
Sbjct: 4   GGAPQRGSAAATASMRRRKPAGGSSSAG---------GGAGTMLQFYTDDAPGLKISPNV 63

Query: 79  VLVVSLCFIGFVTGLHVFGKLYRARS 104
           VL++S+ FI FV  LHV GKLY  +S
Sbjct: 64  VLIMSIGFIAFVAVLHVMGKLYFVKS 80

[Close]
BLAST of CmaCh02G008840 vs. NCBI nr
Match: gi|449463643|ref|XP_004149541.1| (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-40
Identity = 96/109 (88.07%), Postives = 102/109 (93.58%), Query Frame = 1 

Query: 1   MARGTSQSQSASSS--TSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGG 60
           MARG SQSQS++SS  T+RPGVVAPRGSAAATAGLRRRR GSTS + +TGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]
BLAST of CmaCh02G008840 vs. NCBI nr
Match: gi|659127865|ref|XP_008463929.1| (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 6.5e-40
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 1 

Query: 1   MARGTSQSQSASSS--TSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGG 60
           MARG SQSQS++SS  T+RPGVVAPRGSAAATAGLRRRR GSTS   +TGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]
BLAST of CmaCh02G008840 vs. NCBI nr
Match: gi|702476327|ref|XP_010032019.1| (PREDICTED: protein transport protein Sec61 subunit beta [Eucalyptus grandis])

HSP 1 Score: 148.3 bits (373), Expect = 7.7e-33
Identity = 83/111 (74.77%), Postives = 92/111 (82.88%), Query Frame = 1 

Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLG-----STSGAGTTGLVSGGSS 60
           MARG+SQSQSASS TSRPG++APRGSAAA AG+RRRRLG     + +G G+ GL  GG  
Sbjct: 1   MARGSSQSQSASSVTSRPGMMAPRGSAAAAAGMRRRRLGGGGGGAAAGGGSGGLSGGGGG 60

Query: 61  GGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAG 107
           GG NMLRFYTDDAPGLKISPTVVLV+SLCFIGFVT LHVFGKLYR +S  G
Sbjct: 61  GGTNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTALHVFGKLYRYKSGPG 111

[Close]
BLAST of CmaCh02G008840 vs. NCBI nr
Match: gi|595830955|ref|XP_007206170.1| (hypothetical protein PRUPE_ppa013697mg [Prunus persica])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 82/107 (76.64%), Postives = 92/107 (85.98%), Query Frame = 1 

Query: 1   MARGTSQSQ-SASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGN 60
           MARGTSQSQ +ASSSTSRPGV+APRGSAAATAG+RRRR+G ++ +G+ G   GGS  G N
Sbjct: 1   MARGTSQSQTTASSSTSRPGVMAPRGSAAATAGMRRRRIGGSTSSGSVGGGGGGSGAGNN 60

Query: 61  MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAG 107
           MLRFYTDDAPGLKI+PTVVLV+SLCFIGFVT LHVFGKLY  RS  G
Sbjct: 61  MLRFYTDDAPGLKITPTVVLVMSLCFIGFVTALHVFGKLYLHRSGGG 107

[Close]
BLAST of CmaCh02G008840 vs. NCBI nr
Match: gi|593182035|ref|XP_007132194.1| (hypothetical protein PHAVU_011G073900g [Phaseolus vulgaris])

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-32
Identity = 84/108 (77.78%), Postives = 93/108 (86.11%), Query Frame = 1 

Query: 1   MARGTSQSQS-ASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGN 60
           MARG SQSQS AS++T+RPGV+APRGSAAATAG+RRRRLG+ S + + G  SG  SGG N
Sbjct: 1   MARGASQSQSTASAATTRPGVMAPRGSAAATAGMRRRRLGAGSSSASVG--SGSGSGGSN 60

Query: 61  MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 108
           MLRFYTDDAPGLKISPTVVLV+SLCFIGFVT LHVFGKLYR RS  GV
Sbjct: 61  MLRFYTDDAPGLKISPTVVLVMSLCFIGFVTALHVFGKLYRYRSGVGV 106

The following BLAST results are available for this feature:
BLAST of CmaCh02G008840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SC61B_ARATH8.6e-1666.67Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g4507... [more]
SC61B_DICDI4.3e-0752.08Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum GN=sec6... [more]
SC61B_PONAB8.1e-0639.18Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3[more]
SC61B_MOUSE8.1e-0639.18Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3[more]
SC61B_HUMAN8.1e-0639.18Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2[more]
BLAST of CmaCh02G008840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHR1_CUCSA3.5e-4088.07Uncharacterized protein OS=Cucumis sativus GN=Csa_6G293930 PE=4 SV=1[more]
M5W0W7_PRUPE7.0e-3376.64Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013697mg PE=4 SV=1[more]
V7AH75_PHAVU2.0e-3277.78Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G173500g PE=4 SV=1[more]
B9SK56_RICCO1.3e-3177.88Protein transport protein Sec61 subunit beta, putative OS=Ricinus communis GN=RC... [more]
Q2HSW3_MEDTR3.0e-3175.45Protein transporter Sec61 subunit beta-like protein OS=Medicago truncatula GN=MT... [more]
BLAST of CmaCh02G008840 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60460.13.5e-3171.30 Preprotein translocase Sec, Sec61-beta subunit protein[more]
AT2G45070.14.8e-1766.67 Preprotein translocase Sec, Sec61-beta subunit protein[more]
AT3G60540.19.1e-1656.98 Preprotein translocase Sec, Sec61-beta subunit protein[more]
BLAST of CmaCh02G008840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463643|ref|XP_004149541.1|5.0e-4088.07PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus][more]
gi|659127865|ref|XP_008463929.1|6.5e-4088.07PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo][more]
gi|702476327|ref|XP_010032019.1|7.7e-3374.77PREDICTED: protein transport protein Sec61 subunit beta [Eucalyptus grandis][more]
gi|595830955|ref|XP_007206170.1|1.0e-3276.64hypothetical protein PRUPE_ppa013697mg [Prunus persica][more]
gi|593182035|ref|XP_007132194.1|2.9e-3277.78hypothetical protein PHAVU_011G073900g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016482SecG/Sec61-beta/Sbh
Vocabulary: Cellular Component
TermDefinition
GO:0005784Sec61 translocon complex
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031204 posttranslational protein targeting to membrane, translocation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0065009 regulation of molecular function
biological_process GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005784 Sec61 translocon complex
cellular_component GO:0031205 endoplasmic reticulum Sec complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0005086 ARF guanyl-nucleotide exchange factor activity
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G008840.1CmaCh02G008840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016482Protein transport protein SecG/Sec61-beta/SbhPFAMPF03911Sec61_betacoord: 58..96
score: 2.4
NoneNo IPR availablePANTHERPTHR13509:SF4SUBFAMILY NOT NAMEDcoord: 1..104
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G008840Cla008751Watermelon (97103) v1cmawmB583
CmaCh02G008840Csa6G293930Cucumber (Chinese Long) v2cmacuB619
CmaCh02G008840MELO3C025763Melon (DHL92) v3.5.1cmameB535
CmaCh02G008840ClCG02G021060Watermelon (Charleston Gray)cmawcgB527
CmaCh02G008840CSPI06G16370Wild cucumber (PI 183967)cmacpiB624
CmaCh02G008840CmoCh02G008840Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G008840Lsi10G012790Bottle gourd (USVL1VR-Ls)cmalsiB547
CmaCh02G008840Cp4.1LG05g08210Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G008840MELO3C025763.2Melon (DHL92) v3.6.1cmamedB613
CmaCh02G008840CsaV3_6G021770Cucumber (Chinese Long) v3cmacucB0742
CmaCh02G008840Cla97C02G047090Watermelon (97103) v2cmawmbB614
CmaCh02G008840Bhi10G000459Wax gourdcmawgoB0756
CmaCh02G008840CsGy6G015890Cucumber (Gy14) v2cgybcmaB810
CmaCh02G008840Carg03247Silver-seed gourdcarcmaB0477
CmaCh02G008840Carg22594Silver-seed gourdcarcmaB0304
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh02G008840CmaCh20G004780Cucurbita maxima (Rimu)cmacmaB468
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G008840Cucurbita moschata (Rifu)cmacmoB578
CmaCh02G008840Cucurbita moschata (Rifu)cmacmoB592
CmaCh02G008840Cucurbita moschata (Rifu)cmacmoB605
CmaCh02G008840Wild cucumber (PI 183967)cmacpiB586
CmaCh02G008840Wild cucumber (PI 183967)cmacpiB602
CmaCh02G008840Cucumber (Chinese Long) v2cmacuB581
CmaCh02G008840Cucumber (Chinese Long) v2cmacuB595
CmaCh02G008840Melon (DHL92) v3.5.1cmameB571
CmaCh02G008840Watermelon (Charleston Gray)cmawcgB516
CmaCh02G008840Watermelon (Charleston Gray)cmawcgB555
CmaCh02G008840Watermelon (97103) v1cmawmB554
CmaCh02G008840Watermelon (97103) v1cmawmB556
CmaCh02G008840Cucurbita pepo (Zucchini)cmacpeB625
CmaCh02G008840Bottle gourd (USVL1VR-Ls)cmalsiB566
CmaCh02G008840Bottle gourd (USVL1VR-Ls)cmalsiB569
CmaCh02G008840Bottle gourd (USVL1VR-Ls)cmalsiB575
CmaCh02G008840Cucumber (Gy14) v2cgybcmaB124
CmaCh02G008840Cucumber (Gy14) v2cgybcmaB393
CmaCh02G008840Cucumber (Gy14) v2cgybcmaB811
CmaCh02G008840Melon (DHL92) v3.6.1cmamedB653
CmaCh02G008840Melon (DHL92) v3.6.1cmamedB640
CmaCh02G008840Silver-seed gourdcarcmaB0617
CmaCh02G008840Cucumber (Chinese Long) v3cmacucB0693
CmaCh02G008840Cucumber (Chinese Long) v3cmacucB0712
CmaCh02G008840Watermelon (97103) v2cmawmbB612
CmaCh02G008840Watermelon (97103) v2cmawmbB644
CmaCh02G008840Watermelon (97103) v2cmawmbB646
CmaCh02G008840Wax gourdcmawgoB0709
CmaCh02G008840Cucurbita maxima (Rimu)cmacmaB229
CmaCh02G008840Cucurbita maxima (Rimu)cmacmaB417
CmaCh02G008840Cucurbita maxima (Rimu)cmacmaB501
CmaCh02G008840Cucurbita maxima (Rimu)cmacmaB509
CmaCh02G008840Cucumber (Gy14) v1cgycmaB0843