CmaCh02G001440 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G001440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_60
Location	Cma_Chr02 : 690055 .. 691315 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTGTAAAGAAGCCTTTTCAAGCCCATAAATAGACCCTTTTGTTCCACACCCTTTGCTTTGATACAAAGAAGAAAAGGATGCCATGAAGTTGGTTGGCGTGTTGGTTTGTTTGCTGGTTGTAGCTATGGATATTGTGGCTGGCTTGCTCGCCATCGAAGCTGATATTGCACAAAACAAGGTACTCATTTGAAAACAACGCATAACCATGAGTTGAATGGTGATGATTTGAACTCTGTAATGTGGTTATTGAGTAGGTGAAGCACTTGCGTCTGTGGATATTCGAGTGCAGAGACCCAAGTGAGCAGGCTTTCAAATTGGGGCTAGGAGCAGCAGGGCTGCTGGGATTAGCCCACATAATTGCTAATTTGTTGGGGGGTTTCAATTGCATTTGCTATAAGGAAGAGCTTGAGAAATCTCCCCCCAACAAACAGATCTCCATCGGATGCCTGGTTTTCACCTGGTAAGTTTGTTCATATTAAGCTTATATACGAGATGCTAGGTTAAGTGTAACAGCCTAGTCTAAGTTCAATGCTCGCGGATAGTGTCTTCAAATTTTTTCTTTGAGCTTTCCCTCAACCCAAACCCACAACTAGTAAATATTGTCCTCTTTAGATTTATACTCAAGAATTTTAAAACGATATAGTACTTTTTGGACTTTCCTTTAAGGGTTTTAAAACGATATTGTCCTCCTTTAACTTTCCCTCAAGGGTTTTAGAACGGTATTATCCTCTTTCGACTATCAATGTTTTTAAAACGTCTGCCAAAGTGTAAACAAATATTATCCTCTAGTTAGGTATAAATAGATATGGTCTTATTTATACTTTTCATGAATGTTTTAAAAAAGTCTGGTAGGGAGAAATTTTCACACCCTTATAAAAAAGTTTTCGTTATATCGTGCAATCAGGTTAAGAGTCTAAATTTGTGTTTTTGTTTTTGTTTTGAAGGATAATTCTAGCAGTGGGAATGTCGTTGCTGGTGATTGGGGCATTGGCGAACAGTAAATCAAGAACTTCTTGTGGATTTACGCACCATCACTTTCTGTCTATGGGAGGGATTTTGTGTTTCGTTCATGGCTTGTTTTGTGTTGCTTATTATGTTTCTTCCACGGTTGCTAATTAAATGTTCGTTTTTTATTCAAACTTGTAAGAATTCTACTAATTTTATGAGTACAAAAGTAAAGGGTTTTAACCAAAATTTTGAATTCAAGATATTGTTCTATGAAATAAATCAGTCATAAAATAAAGTCACAAATCGTCAA

mRNA sequence

GTAGTGTAAAGAAGCCTTTTCAAGCCCATAAATAGACCCTTTTGTTCCACACCCTTTGCTTTGATACAAAGAAGAAAAGGATGCCATGAAGTTGGTTGGCGTGTTGGTTTGTTTGCTGGTTGTAGCTATGGATATTGTGGCTGGCTTGCTCGCCATCGAAGCTGATATTGCACAAAACAAGGTGAAGCACTTGCGTCTGTGGATATTCGAGTGCAGAGACCCAAGTGAGCAGGCTTTCAAATTGGGGCTAGGAGCAGCAGGGCTGCTGGGATTAGCCCACATAATTGCTAATTTGTTGGGGGGTTTCAATTGCATTTGCTATAAGGAAGAGCTTGAGAAATCTCCCCCCAACAAACAGATCTCCATCGGATGCCTGGTTTTCACCTGGATAATTCTAGCAGTGGGAATGTCGTTGCTGGTGATTGGGGCATTGGCGAACAGTAAATCAAGAACTTCTTGTGGATTTACGCACCATCACTTTCTGTCTATGGGAGGGATTTTGTGTTTCGTTCATGGCTTGTTTTGTGTTGCTTATTATGTTTCTTCCACGGTTGCTAATTAAATGTTCGTTTTTTATTCAAACTTGTAAGAATTCTACTAATTTTATGAGTACAAAAGTAAAGGGTTTTAACCAAAATTTTGAATTCAAGATATTGTTCTATGAAATAAATCAGTCATAAAATAAAGTCACAAATCGTCAA

Coding sequence (CDS)

ATGAAGTTGGTTGGCGTGTTGGTTTGTTTGCTGGTTGTAGCTATGGATATTGTGGCTGGCTTGCTCGCCATCGAAGCTGATATTGCACAAAACAAGGTGAAGCACTTGCGTCTGTGGATATTCGAGTGCAGAGACCCAAGTGAGCAGGCTTTCAAATTGGGGCTAGGAGCAGCAGGGCTGCTGGGATTAGCCCACATAATTGCTAATTTGTTGGGGGGTTTCAATTGCATTTGCTATAAGGAAGAGCTTGAGAAATCTCCCCCCAACAAACAGATCTCCATCGGATGCCTGGTTTTCACCTGGATAATTCTAGCAGTGGGAATGTCGTTGCTGGTGATTGGGGCATTGGCGAACAGTAAATCAAGAACTTCTTGTGGATTTACGCACCATCACTTTCTGTCTATGGGAGGGATTTTGTGTTTCGTTCATGGCTTGTTTTGTGTTGCTTATTATGTTTCTTCCACGGTTGCTAATTAA

Protein sequence

MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSKSRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVAN

Homology

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BLAST of CmaCh02G001440 vs. TrEMBL
Match: A0A0A0LR43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G423620 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 7.1e-74
Identity = 139/157 (88.54%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           MKLVGVL+CLLVVAMDIVAGLL IEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL
Sbjct: 1   MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           LGLAHIIANLLGG NCIC ++ELEKSPPN+QISI CL+FTWIILAVGMS+LVIGA+ N+K
Sbjct: 61  LGLAHIIANLLGGCNCICSQDELEKSPPNRQISIACLIFTWIILAVGMSMLVIGAMGNNK 120

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           SR SCGFTHHHFLS+GGILCFVHGLFCVAYYV++T A
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA 157

[Close]

BLAST of CmaCh02G001440 vs. TrEMBL
Match: A9P921_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06850g PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.5e-65
Identity = 119/157 (75.80%), Postives = 143/157 (91.08%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           +K+ GVLVCLL+VAMD+VAG+L I+ADIAQNKVKHLRLWIFECRDPS+ AFKLGL AAG+
Sbjct: 2   VKIGGVLVCLLIVAMDVVAGILGIQADIAQNKVKHLRLWIFECRDPSQDAFKLGLAAAGV 61

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           LGLAH+IANLLGG  CIC +EEL+++ PN+Q+S+ C +FTWIILAVG+S+LVIG ++N+K
Sbjct: 62  LGLAHVIANLLGGCMCICSQEELQRASPNRQLSVACFLFTWIILAVGLSMLVIGTMSNNK 121

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           SR SCGFTHHHF S+GGILCFVHGLFCVAYYVS+T A
Sbjct: 122 SRASCGFTHHHFFSIGGILCFVHGLFCVAYYVSATAA 158

[Close]

BLAST of CmaCh02G001440 vs. TrEMBL
Match: A0A067DMR1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031018mg PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.7e-63
Identity = 116/158 (73.42%), Postives = 140/158 (88.61%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           +K+ GVLVCLL++A+D+ AG+L  +A++AQNKVKHLRLWIFECRDPS  AFKLGL AAGL
Sbjct: 2   VKVGGVLVCLLIIALDVAAGILGFQAEVAQNKVKHLRLWIFECRDPSHDAFKLGLAAAGL 61

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           L LAH+IANLLGG  CIC ++EL K+ PN+Q+S+ CLVF+WIILAVGMS+LVIG L+N+K
Sbjct: 62  LALAHVIANLLGGCMCICSQDELSKASPNRQLSLACLVFSWIILAVGMSMLVIGTLSNNK 121

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVAN 159
           SR SCG THHHFLS+GGILCFVHGLFCVAYYVSS+ A+
Sbjct: 122 SRASCGLTHHHFLSIGGILCFVHGLFCVAYYVSSSAAS 159

[Close]

BLAST of CmaCh02G001440 vs. TrEMBL
Match: V4UEK6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016802mg PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.7e-63
Identity = 116/158 (73.42%), Postives = 140/158 (88.61%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           +K+ GVLVCLL++A+D+ AG+L  +A++AQNKVKHLRLWIFECRDPS  AFKLGL AAGL
Sbjct: 2   VKVGGVLVCLLIIALDVAAGILGFQAEVAQNKVKHLRLWIFECRDPSHDAFKLGLAAAGL 61

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           L LAH+IANLLGG  CIC ++EL K+ PN+Q+S+ CLVF+WIILAVGMS+LVIG L+N+K
Sbjct: 62  LALAHVIANLLGGCMCICSQDELSKASPNRQLSLACLVFSWIILAVGMSMLVIGTLSNNK 121

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVAN 159
           SR SCG THHHFLS+GGILCFVHGLFCVAYYVSS+ A+
Sbjct: 122 SRASCGLTHHHFLSIGGILCFVHGLFCVAYYVSSSAAS 159

[Close]

BLAST of CmaCh02G001440 vs. TrEMBL
Match: A0A061E2Q1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007801 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 114/158 (72.15%), Postives = 139/158 (87.97%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           +KL GVLVCLL+VAMD+ AG+L I+A++AQNKVKHLRLWIFECRDPS  AFKL LGAA L
Sbjct: 2   LKLGGVLVCLLIVAMDVAAGILGIQAEVAQNKVKHLRLWIFECRDPSHDAFKLALGAAAL 61

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           L LAH++ANLLGG  C+C +EE +++ PN+Q+S+ CL+FTWIILAVG+S LVIG L+N+K
Sbjct: 62  LTLAHVLANLLGGCMCVCSQEEFQRASPNRQLSVACLIFTWIILAVGLSTLVIGILSNNK 121

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVAN 159
           S+ SCGFTHHHFLS+GGILCFVHGLF VAYYVS+T A+
Sbjct: 122 SKASCGFTHHHFLSIGGILCFVHGLFSVAYYVSATAAS 159

[Close]

BLAST of CmaCh02G001440 vs. TAIR10
Match: AT2G32280.1 (AT2G32280.1 Protein of unknown function (DUF1218))

HSP 1 Score: 218.4 bits (555), Expect = 3.2e-57
Identity = 96/156 (61.54%), Postives = 131/156 (83.97%), Query Frame = 1


Query: 2   KLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLL 61
           K+ G+LVCL++V +D+ A +L I+A++AQN+VKH+RLW+FECR+PS+ AF+LGLGAA +L
Sbjct: 3   KIGGILVCLVIVGLDVAAAILGIQAEVAQNQVKHMRLWLFECREPSQDAFRLGLGAAAIL 62

Query: 62  GLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSKS 121
            +AH++ NL+GG  CIC ++E ++S   +QIS+ CLV TWI+ AVG   +VIG ++NSKS
Sbjct: 63  VMAHVLLNLVGGCLCICSQDEFQRSSSTRQISMACLVLTWIVFAVGFGSIVIGTMSNSKS 122

Query: 122 RTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           R+SCGFTHHHFLS+GGILCF+H LFCVAYYVS+T A
Sbjct: 123 RSSCGFTHHHFLSIGGILCFLHALFCVAYYVSATAA 158

[Close]

BLAST of CmaCh02G001440 vs. TAIR10
Match: AT4G21310.1 (AT4G21310.1 Protein of unknown function (DUF1218))

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-53
Identity = 94/154 (61.04%), Postives = 124/154 (80.52%), Query Frame = 1


Query: 4   VGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGL 63
           VG  +C+L++AMD+ AG+L IEA+IAQNKVKHL++WIFECRDPS  AFK GL A  LL L
Sbjct: 5   VGFFICILILAMDVSAGILGIEAEIAQNKVKHLKMWIFECRDPSYTAFKYGLAACILLVL 64

Query: 64  AHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSKSRT 123
           AH+ AN LGG  C+  +++LEKS  NKQ+++  L+FTWIILA+  S+L++G +ANS+SR 
Sbjct: 65  AHVTANFLGGCLCVASRQDLEKSSANKQLAVASLIFTWIILAIAFSMLIVGTMANSRSRK 124

Query: 124 SCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           +CG +HH  LS+GGILCFVHGLF VAYY+S+T +
Sbjct: 125 NCGISHHRVLSIGGILCFVHGLFAVAYYISATAS 158

[Close]

BLAST of CmaCh02G001440 vs. TAIR10
Match: AT1G11500.1 (AT1G11500.1 Protein of unknown function (DUF1218))

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-24
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1


Query: 4   VGVLVCLLVVAMDIVAGLLAIEADIAQNKV------KHLRLWIFECR-DPSEQAFKLGLG 63
           +G LV ++++  DI A +L IEA+IAQ+K       +H R     CR  PS+ AF  G+ 
Sbjct: 5   LGFLVSVVIICADITATVLGIEAEIAQSKAPHHHHQQHSRHSGSGCRRSPSDGAFAEGVA 64

Query: 64  AAGLLGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGAL 123
           A  LL + H++AN+LGG   I  K++ +++  NK +++  LV +WI   V  S L+IG L
Sbjct: 65  AMVLLFIVHVLANVLGGCTYIRSKQDFKRATANKILAVAFLVLSWIFFVVSYSTLMIGTL 124

Query: 124 ANSKSRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           ANS++   C   H  F  +GGI C  HG+   AYYVS+  A
Sbjct: 125 ANSRTNRLCSLPHRWFFLIGGIFCLGHGVVTSAYYVSAIAA 165

[Close]

BLAST of CmaCh02G001440 vs. TAIR10
Match: AT1G05291.1 (AT1G05291.1 Protein of unknown function (DUF1218))

HSP 1 Score: 100.5 bits (249), Expect = 9.6e-22
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1


Query: 6   VLVCL-LVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLA 65
           ++VC+ L V +DIVAG + ++A  AQ  VKH +L   EC+ PS+ AF LG+ A   L  A
Sbjct: 17  IIVCIVLTVGLDIVAGFVGLQAQAAQQYVKHDKL---ECKAPSKTAFVLGIIAVSCLATA 76

Query: 66  HIIANLLGG--FNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSKSR 125
           H+ AN++G    N       L K+      ++ CL   W++   G  +L  G  +N++SR
Sbjct: 77  HVSANVIGCSISNLFQALGALPKNKITTYFNMACLFLIWVVGIFGALILANGIWSNTESR 136

Query: 126 TSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
             C FT++H  S+GG +CF+H +    YY+SS VA
Sbjct: 137 IRCRFTNNHVFSIGGKVCFLHAIVSGIYYISSIVA 168

[Close]

BLAST of CmaCh02G001440 vs. NCBI nr
Match: gi|659111628|ref|XP_008455827.1| (PREDICTED: uncharacterized protein LOC103495927 [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 7.8e-74
Identity = 140/157 (89.17%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           MKLVGVL+CLLVVAMDIVAGLL IEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL
Sbjct: 1   MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           LGLAHIIANLLGG NCIC ++ELEKSPPN+QISI CLVFTWIILAVGMS+LVIGA+ N+K
Sbjct: 61  LGLAHIIANLLGGCNCICSQDELEKSPPNRQISIACLVFTWIILAVGMSMLVIGAMGNNK 120

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           SR SCGFTHHHFLS+GGILCFVHGLFCVAYYV++T A
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA 157

[Close]

BLAST of CmaCh02G001440 vs. NCBI nr
Match: gi|449468325|ref|XP_004151872.1| (PREDICTED: uncharacterized protein LOC101212188 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.0e-73
Identity = 139/157 (88.54%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           MKLVGVL+CLLVVAMDIVAGLL IEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL
Sbjct: 1   MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           LGLAHIIANLLGG NCIC ++ELEKSPPN+QISI CL+FTWIILAVGMS+LVIGA+ N+K
Sbjct: 61  LGLAHIIANLLGGCNCICSQDELEKSPPNRQISIACLIFTWIILAVGMSMLVIGAMGNNK 120

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           SR SCGFTHHHFLS+GGILCFVHGLFCVAYYV++T A
Sbjct: 121 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA 157

[Close]

BLAST of CmaCh02G001440 vs. NCBI nr
Match: gi|566211888|ref|XP_006372995.1| (hypothetical protein POPTR_0017s06850g [Populus trichocarpa])

HSP 1 Score: 255.8 bits (652), Expect = 5.1e-65
Identity = 119/157 (75.80%), Postives = 143/157 (91.08%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           +K+ GVLVCLL+VAMD+VAG+L I+ADIAQNKVKHLRLWIFECRDPS+ AFKLGL AAG+
Sbjct: 2   VKIGGVLVCLLIVAMDVVAGILGIQADIAQNKVKHLRLWIFECRDPSQDAFKLGLAAAGV 61

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           LGLAH+IANLLGG  CIC +EEL+++ PN+Q+S+ C +FTWIILAVG+S+LVIG ++N+K
Sbjct: 62  LGLAHVIANLLGGCMCICSQEELQRASPNRQLSVACFLFTWIILAVGLSMLVIGTMSNNK 121

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           SR SCGFTHHHF S+GGILCFVHGLFCVAYYVS+T A
Sbjct: 122 SRASCGFTHHHFFSIGGILCFVHGLFCVAYYVSATAA 158

[Close]

BLAST of CmaCh02G001440 vs. NCBI nr
Match: gi|694450655|ref|XP_009350680.1| (PREDICTED: uncharacterized protein LOC103942209 [Pyrus x bretschneideri])

HSP 1 Score: 252.3 bits (643), Expect = 5.6e-64
Identity = 118/157 (75.16%), Postives = 141/157 (89.81%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           +K+ G LVCLL+V MDIVAG+L IEA++ QNKVKHLRLWIFECR+PS +AFKLGL AAGL
Sbjct: 2   VKIGGFLVCLLIVVMDIVAGILGIEAELEQNKVKHLRLWIFECREPSHEAFKLGLAAAGL 61

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           L LAH++ANLLGG NCIC ++EL+K+PPNKQ+S+ CLVFTWIILAVG+S+LVIG  +N K
Sbjct: 62  LVLAHVVANLLGGCNCICTQDELQKAPPNKQLSMACLVFTWIILAVGLSMLVIGTWSNHK 121

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           SR SCGFTHHHFLS+GGILCFVHGLFCVAYY+S+T +
Sbjct: 122 SRASCGFTHHHFLSIGGILCFVHGLFCVAYYISTTAS 158

[Close]

BLAST of CmaCh02G001440 vs. NCBI nr
Match: gi|743924573|ref|XP_011006410.1| (PREDICTED: uncharacterized protein LOC105112410 isoform X1 [Populus euphratica])

HSP 1 Score: 249.2 bits (635), Expect = 4.8e-63
Identity = 116/157 (73.89%), Postives = 140/157 (89.17%), Query Frame = 1


Query: 1   MKLVGVLVCLLVVAMDIVAGLLAIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGL 60
           +KL GVLVC+L+VAMD+VAG+L I+ADIAQNK KHLRLWIFECRDPS+ AFKLGL AA +
Sbjct: 2   VKLGGVLVCMLIVAMDVVAGILGIQADIAQNKAKHLRLWIFECRDPSQDAFKLGLAAAVV 61

Query: 61  LGLAHIIANLLGGFNCICYKEELEKSPPNKQISIGCLVFTWIILAVGMSLLVIGALANSK 120
           LGLAH+IANL GG  CIC +EEL+++ PN+Q+S+ C +FTWIILAVG+S+LVIG ++N+K
Sbjct: 62  LGLAHVIANLFGGCMCICSQEELQRASPNRQLSVACFLFTWIILAVGLSMLVIGTMSNNK 121

Query: 121 SRTSCGFTHHHFLSMGGILCFVHGLFCVAYYVSSTVA 158
           SR SCGFTHHHF S+GGILCFVHGLFCVAYYVS+T A
Sbjct: 122 SRASCGFTHHHFFSIGGILCFVHGLFCVAYYVSATAA 158

The following BLAST results are available for this feature:

BLAST of CmaCh02G001440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G001440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR43_CUCSA	7.1e-74	88.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G423620 PE=4 SV=1	[more]
A9P921_POPTR	3.5e-65	75.80	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06850g PE=2 SV=1	[more]
A0A067DMR1_CITSI	5.7e-63	73.42	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031018mg PE=4 SV=1	[more]
V4UEK6_9ROSI	5.7e-63	73.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016802mg PE=4 SV=1	[more]
A0A061E2Q1_THECC	8.2e-62	72.15	Uncharacterized protein OS=Theobroma cacao GN=TCM_007801 PE=4 SV=1	[more]

BLAST of CmaCh02G001440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32280.1	3.2e-57	61.54	Protein of unknown function (DUF1218)	[more]
AT4G21310.1	2.1e-53	61.04	Protein of unknown function (DUF1218)	[more]
AT1G11500.1	2.1e-24	39.75	Protein of unknown function (DUF1218)	[more]
AT1G05291.1	9.6e-22	38.06	Protein of unknown function (DUF1218)	[more]

BLAST of CmaCh02G001440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111628\|ref\|XP_008455827.1\|	7.8e-74	89.17	PREDICTED: uncharacterized protein LOC103495927 [Cucumis melo]	[more]
gi\|449468325\|ref\|XP_004151872.1\|	1.0e-73	88.54	PREDICTED: uncharacterized protein LOC101212188 [Cucumis sativus]	[more]
gi\|566211888\|ref\|XP_006372995.1\|	5.1e-65	75.80	hypothetical protein POPTR_0017s06850g [Populus trichocarpa]	[more]
gi\|694450655\|ref\|XP_009350680.1\|	5.6e-64	75.16	PREDICTED: uncharacterized protein LOC103942209 [Pyrus x bretschneideri]	[more]
gi\|743924573\|ref\|XP_011006410.1\|	4.8e-63	73.89	PREDICTED: uncharacterized protein LOC105112410 isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010588	cotyledon vascular tissue pattern formation
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0010087	phloem or xylem histogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G001440.1	CmaCh02G001440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 57..144 score: 4.3
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 1..158 score: 1.4
None	No IPR available	PANTHER	PTHR31769:SF4	SUBFAMILY NOT NAMED	coord: 1..158 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G001440	Cucsa.045620	Cucumber (Gy14) v1	cgycmaB0043
CmaCh02G001440	Cucsa.072960	Cucumber (Gy14) v1	cgycmaB0117
CmaCh02G001440	Cla010513	Watermelon (97103) v1	cmawmB594
CmaCh02G001440	Cla001327	Watermelon (97103) v1	cmawmB578
CmaCh02G001440	Csa2G423620	Cucumber (Chinese Long) v2	cmacuB589
CmaCh02G001440	Csa6G516650	Cucumber (Chinese Long) v2	cmacuB640
CmaCh02G001440	MELO3C019224	Melon (DHL92) v3.5.1	cmameB533
CmaCh02G001440	ClCG02G008330	Watermelon (Charleston Gray)	cmawcgB528
CmaCh02G001440	ClCG01G022300	Watermelon (Charleston Gray)	cmawcgB526
CmaCh02G001440	CSPI06G33950	Wild cucumber (PI 183967)	cmacpiB644
CmaCh02G001440	CSPI02G26770	Wild cucumber (PI 183967)	cmacpiB594
CmaCh02G001440	CmoCh02G001490	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G001440	CmoCh20G006050	Cucurbita moschata (Rifu)	cmacmoB608
CmaCh02G001440	CmoCh07G002830	Cucurbita moschata (Rifu)	cmacmoB629
CmaCh02G001440	Lsi10G001620	Bottle gourd (USVL1VR-Ls)	cmalsiB549
CmaCh02G001440	Cp4.1LG16g04620	Cucurbita pepo (Zucchini)	cmacpeB628
CmaCh02G001440	Cp4.1LG19g07590	Cucurbita pepo (Zucchini)	cmacpeB635
CmaCh02G001440	Cp4.1LG05g14610	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G001440	MELO3C019224.2	Melon (DHL92) v3.6.1	cmamedB612
CmaCh02G001440	MELO3C007350.2	Melon (DHL92) v3.6.1	cmamedB667
CmaCh02G001440	CsaV3_6G049430	Cucumber (Chinese Long) v3	cmacucB0759
CmaCh02G001440	CsaV3_2G035290	Cucumber (Chinese Long) v3	cmacucB0702
CmaCh02G001440	Cla97C02G034960	Watermelon (97103) v2	cmawmbB615
CmaCh02G001440	Bhi10G001159	Wax gourd	cmawgoB0758
CmaCh02G001440	CsGy2G026240	Cucumber (Gy14) v2	cgybcmaB230
CmaCh02G001440	Carg07825	Silver-seed gourd	carcmaB0911
CmaCh02G001440	Carg03150	Silver-seed gourd	carcmaB0478
CmaCh02G001440	Carg13547	Silver-seed gourd	carcmaB0042

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G001440	CmaCh03G005120	Cucurbita maxima (Rimu)	cmacmaB497
CmaCh02G001440	CmaCh07G002920	Cucurbita maxima (Rimu)	cmacmaB508

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G001440	Cucurbita pepo (Zucchini)	cmacpeB617
CmaCh02G001440	Cucurbita pepo (Zucchini)	cmacpeB642
CmaCh02G001440	Bottle gourd (USVL1VR-Ls)	cmalsiB561
CmaCh02G001440	Cucumber (Gy14) v2	cgybcmaB960
CmaCh02G001440	Melon (DHL92) v3.6.1	cmamedB642
CmaCh02G001440	Silver-seed gourd	carcmaB1010
CmaCh02G001440	Silver-seed gourd	carcmaB1216
CmaCh02G001440	Cucumber (Chinese Long) v3	cmacucB0768
CmaCh02G001440	Watermelon (97103) v2	cmawmbB618
CmaCh02G001440	Watermelon (97103) v2	cmawmbB640
CmaCh02G001440	Wax gourd	cmawgoB0733
CmaCh02G001440	Cucurbita maxima (Rimu)	cmacmaB161
CmaCh02G001440	Cucurbita maxima (Rimu)	cmacmaB420
CmaCh02G001440	Cucurbita maxima (Rimu)	cmacmaB451
CmaCh02G001440	Cucurbita maxima (Rimu)	cmacmaB477
CmaCh02G001440	Cucumber (Gy14) v1	cgycmaB0409
CmaCh02G001440	Cucurbita moschata (Rifu)	cmacmoB576
CmaCh02G001440	Cucurbita moschata (Rifu)	cmacmoB600
CmaCh02G001440	Wild cucumber (PI 183967)	cmacpiB650
CmaCh02G001440	Cucumber (Chinese Long) v2	cmacuB643
CmaCh02G001440	Bottle gourd (USVL1VR-Ls)	cmalsiB578
CmaCh02G001440	Melon (DHL92) v3.5.1	cmameB562
CmaCh02G001440	Watermelon (Charleston Gray)	cmawcgB532
CmaCh02G001440	Watermelon (97103) v1	cmawmB598